BAC Information

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BAC

Clone NameB6Ng01-040E15
Chromosome1 (Build37)
Map Location 44,925,478 - 45,058,454
singlet/doubletdoublet
Overlap geneLOC100041752
Upstream geneLOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738
Downstream geneLOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E15.bB6Ng01-040E15.g
ACCDH867305DH867306
length1,0041,008
definitionDH867305|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E15, 5' end.DH867306|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,057,450 - 45,058,454)(44,925,478 - 44,926,505)
sequence
gaattctttgttcagatggttttacaacctggtttgtatctgtgcctggc
cttgccatatttgaatttcctattggagccttgaggagttcaaagcctgc
tgagcttgctttgcaacataatccagctgaaacaaaacagaacccagctc
agaaacaaagaacaggtctttgggtgtttctgctatatatgcacacagag
cttaaaaattaaactttgagccttgatcagaaaacctttgtcttggcttc
attcttctctcacccccctgtcctatttcaatcccagtctcactttcagg
tgtacccagttctccacagatgctggacaggtagtttccaaatgagggac
ttgaacacagagggatcaactgaaggatgctgtttttggtggagctccac
agaaaacagcagtaatggtatcctgcgtggcagtaagaggtgcattcaac
agaatattgggctaggctgagtccagtatgttgacctgaggccaaattca
cctaggggtatatcagagcatagggacaggagaattctatataggcattt
ttccacagtcaagaggtgcatcaggagagaggagcatgatttaaagtaat
ataaaattaaacaaaatgaatttttaaaaaagagaaaaataccaaacaac
aagaacaacaacaacaaaagatgtcagaaaaattcttagctcaagtatat
ttatgctgtgcatggttcccagaaataggaatggtaaatatacatatgac
atgagaaataaagagagagaataggtttcagaaaagcagttgtctccggt
ctgggccacattagcaaaagagaaggaaaatggatttcagagctttccta
gggacaaggggaaatcagaagacatcttgctttctctctgactcctactg
gagataccattagttctggttatactaagatctcttccctctctgggtat
tgtctgtcattggtgcaccaatctgtcacgtgtgtctatttttgttacat
tgtt
gaattctctgtttagatctgtacccatttttagttgcattatttgattta
ttgatgtctagtttcttgagttctttatatattttactatcagatttcag
ccctatatcagatgtagggttgataaaaatcttcccattctgttggtggc
ctttatgttgaggtctttgatccacttggacttgagttttgtgcaaggta
ctagatacggatctatttgcattcttctgtattcagacatgcagttagac
caacatcatttgtcaaagatgctttcgttgtttcattgtatagtgtagat
tgaaggattattattttctgtatatattaattagtgctggaaattgatat
gatggcaatcacagtatgctgagaaagttcagccttaagtgcagtcctta
ccagatcagtctttaaggctaaacaaaccaaggccatcttgggtcatcag
ccctctctgaagctgttctgtaagcaattctcccaaagaaacagcatcaa
agcagtctgagggaggaataggcttcacagcagttctgaagatggatctt
gttaatgctgcttccttggttattattttctgtgaaaatacaagcttcca
caagtaatatgcaattactatcatgtctcctgattgaagggccttctttc
agaattcctttatccctcccaaaaagttcagccttccaatttctgcccag
ctaatttgccatcagattttttattatagccaatcagagtatgttttaga
tagataaaaagggacagaaacacacttgctcacaatgtactccaacagta
tagtttttggcttgtttctatttattttatttaattattttatttattta
ttgattattatcagaacagaagtattttaattacgtatttcttctttaca
tttcaatgctatccaaaaagaccccataccttttcctccacttccctacc
acctactctattcttggtcttgaattccctgtactgagtattaaagttgg
aagaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45057450_45058454
seq2: B6Ng01-040E15.b_45_1048 (reverse)

seq1  AACAATGAAACAAAAATAGACACACGTGGACAGATTGGTGCACCAATGAC  50
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  AACAATGTAACAAAAATAGACACACGT-GACAGATTGGTGCACCAATGAC  49

seq1  AGACAATACCCAGAGAGGGAAGAGATCTTAGTATAACCAGAACTAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATACCCAGAGAGGGAAGAGATCTTAGTATAACCAGAACTAATGGT  99

seq1  ATCTCCAGTAGGAGTCAGAGAGAAAGCAAGATGTCTTCTGATTTCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGTAGGAGTCAGAGAGAAAGCAAGATGTCTTCTGATTTCCCCTT  149

seq1  GTCCCTAGGAAAGCTCTGAAATCCATTTTCCTTCTCTTTTGCTAATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGGAAAGCTCTGAAATCCATTTTCCTTCTCTTTTGCTAATGTGG  199

seq1  CCCAGACCGGAGACAACTGCTTTTCTGAAACCTATTCTCTCTCTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCGGAGACAACTGCTTTTCTGAAACCTATTCTCTCTCTTTATTT  249

seq1  CTCATGTCATATGTATATTTACCATTCCTATTTCTGGGAACCATGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCATATGTATATTTACCATTCCTATTTCTGGGAACCATGCACAG  299

seq1  CATAAATATACTTGAGCTAAGAATTTTTCTGACATCTTTTGTTGTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATACTTGAGCTAAGAATTTTTCTGACATCTTTTGTTGTTGTTG  349

seq1  TTCTTGTTGTTTGGTATTTTTCTCTTTTTTAAAAATTCATTTTGTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGTTTGGTATTTTTCTCTTTTTTAAAAATTCATTTTGTTTAAT  399

seq1  TTTATATTACTTTAAATCATGCTCCTCTCTCCTGATGCACCTCTTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTACTTTAAATCATGCTCCTCTCTCCTGATGCACCTCTTGACTG  449

seq1  TGGAAAAATGCCTATATAGAATTCTCCTGTCCCTATGCTCTGATATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATGCCTATATAGAATTCTCCTGTCCCTATGCTCTGATATACCC  499

seq1  CTAGGTGAATTTGGCCTCAGGTCAACATACTGGACTCAGCCTAGCCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAATTTGGCCTCAGGTCAACATACTGGACTCAGCCTAGCCCAAT  549

seq1  ATTCTGTTGAATGCACCTCTTACTGCCACGCAGGATACCATTACTGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGAATGCACCTCTTACTGCCACGCAGGATACCATTACTGCTGT  599

seq1  TTTCTGTGGAGCTCCACCAAAAACAGCATCCTTCAGTTGATCCCTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGAGCTCCACCAAAAACAGCATCCTTCAGTTGATCCCTCTGTG  649

seq1  TTCAAGTCCCTCATTTGGAAACTACCTGTCCAGCATCTGTGGAGAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCCCTCATTTGGAAACTACCTGTCCAGCATCTGTGGAGAACTGG  699

seq1  GTACACCTGAAAGTGAGACTGGGATTGAAATAGGACAGGGGGGTGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTGAAAGTGAGACTGGGATTGAAATAGGACAGGGGGGTGAGAGA  749

seq1  AGAATGAAGCCAAGACAAAGGTTTTCTGATCAAGGCTCAAAGTTTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGCCAAGACAAAGGTTTTCTGATCAAGGCTCAAAGTTTAATTT  799

seq1  TTAAGCTCTGTGTGCATATATAGCAGAAACACCCAAAGACCTGTTCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTGTGTGCATATATAGCAGAAACACCCAAAGACCTGTTCTTTG  849

seq1  TTTCTGAGCTGGGTTCTGTTTTGTTTCAGCTGGATTATGTTGCAAAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTGGGTTCTGTTTTGTTTCAGCTGGATTATGTTGCAAAGCAA  899

seq1  GCTCAGCAGGCTTTGAACTCCTCAAGGCTCCAATAGGAAATTCAAATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGCTTTGAACTCCTCAAGGCTCCAATAGGAAATTCAAATATG  949

seq1  GCAAGGCCAGGCACAGATACAAACCAGGTTGTAAAACCATCTGAACAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCCAGGCACAGATACAAACCAGGTTGTAAAACCATCTGAACAAAG  999

seq1  AATTC  1005
      |||||
seq2  AATTC  1004

seq1: chr1_44925478_44926505
seq2: B6Ng01-040E15.g_66_1073

seq1  GAATTCTCTGTTTAGATCTGTACCCATTTTTAGTTGCATTATTTGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGATCTGTACCCATTTTTAGTTGCATTATTTGATTTA  50

seq1  TTGATGTCTAGTTTCTTGAGTTCTTTATATATTTTACTATCAGATTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCTAGTTTCTTGAGTTCTTTATATATTTTACTATCAGATTTCAG  100

seq1  CCCTATATCAGATGTAGGGTTGATAAAAATCTTCCCATTCTGTTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATCAGATGTAGGGTTGATAAAAATCTTCCCATTCTGTTGGTGGC  150

seq1  CTTTATGTTGAGGTCTTTGATCCACTTGGACTTGAGTTTTGTGCAAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTGAGGTCTTTGATCCACTTGGACTTGAGTTTTGTGCAAGGTA  200

seq1  CTAGATACGGATCTATTTGCATTCTTCTGTATTCAGACATGCAGTTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACGGATCTATTTGCATTCTTCTGTATTCAGACATGCAGTTAGAC  250

seq1  CAACATCATTTGTCAAAGATGCTTTCGTTGTTTCATTGTATAGTGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATTTGTCAAAGATGCTTTCGTTGTTTCATTGTATAGTGTAGAT  300

seq1  TGAAGGATTATTATTTTCTGTATATATTAATTAGTGCTGGAAATTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTATTATTTTCTGTATATATTAATTAGTGCTGGAAATTGATAT  350

seq1  GATGGCAATCACAGTATGCTGAGAAAGTTCAGCCTTAAGTGCAGTCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAATCACAGTATGCTGAGAAAGTTCAGCCTTAAGTGCAGTCCTTA  400

seq1  CCAGATCAGTCTTTAAGGCTAAACAAACCAAGGCCATCTTGGGTCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAGTCTTTAAGGCTAAACAAACCAAGGCCATCTTGGGTCATCAG  450

seq1  CCCTCTCTGAAGCTGTTCTGTAAGCAATTCTCCCAAAGAAACAGCATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTGAAGCTGTTCTGTAAGCAATTCTCCCAAAGAAACAGCATCAA  500

seq1  AGCAGTCTGAGGGAGGAATAGGCTTCACAGCAGTTCTGAAGATGGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGAGGGAGGAATAGGCTTCACAGCAGTTCTGAAGATGGATCTT  550

seq1  GTTAATGCTGCTTCCTTGGTTATTATTTTCTGTGAAAATACAAGCTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCTGCTTCCTTGGTTATTATTTTCTGTGAAAATACAAGCTTCCA  600

seq1  CAAGTAATATGCAATTACTATCATGTCTCCTGATTGAAGGGCCTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATATGCAATTACTATCATGTCTCCTGATTGAAGGGCCTTCTTTC  650

seq1  AGAATTCCTTTATCCCTCCCAAAAAGTTCAGCCTTCCAATTTCTGCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTTTATCCCTCCCAAAAAGTTCAGCCTTCCAATTTCTGCCCAG  700

seq1  CTAATTTGCCATCAGA-TTTTTATTATAGCCAATCAGAGTATGTTTTAGA  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAATTTGCCATCAGATTTTTTATTATAGCCAATCAGAGTATGTTTTAGA  750

seq1  TAGATAAAAAGGGACAGAAACACACTTGCTCACAATGTACTCCAACAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAAAGGGACAGAAACACACTTGCTCACAATGTACTCCAACAGTA  800

seq1  TAGTTTTTGGCTTGTTTTCTATTTATTTTATTTTATTTATTTTATTTTAT  849
      |||||||||||||| ||||||||||||||| |||| |||||||| |||||
seq2  TAGTTTTTGGCTTG-TTTCTATTTATTTTA-TTTAATTATTTTA-TTTAT  847

seq1  TTTATTTTATTTTTTTCAGAACAGAAGTATTTTTAATTAGGTATTTTCTT  899
      ||   || ||| || |||||||||||||| ||||||||| ||| ||||||
seq2  TT--ATTGATTATTATCAGAACAGAAGTA-TTTTAATTACGTA-TTTCTT  893

seq1  CATTTACATTTCAAATGCTATCCCAAAAAGACCCCCATACCCTCTCCCCC  949
      | |||||||||| |||||||| ||||||||| ||||||||| | ||| ||
seq2  C-TTTACATTTC-AATGCTAT-CCAAAAAGA-CCCCATACCTTTTCCTCC  939

seq1  CACCTCCCCTACCCACCCACTCTAATTTCTTGGCCCTGGAGTTCCCCTGT  999
         || ||||| ||||| ||||||  ||||||| | || |  | ||||||
seq2  --ACTTCCCTA-CCACCTACTCTA--TTCTTGGTCTTGAA--TTCCCTGT  982

seq1  ACTGAGGTATATAAAGTTTGCAAGACCAA  1028
      ||||| |||| ||||| ||| ||||||||
seq2  ACTGA-GTAT-TAAAG-TTGGAAGACCAA  1008