BAC Information

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BAC

Clone NameB6Ng01-040E20
Chromosome1 (Build37)
Map Location 136,364,614 - 136,475,164
singlet/doubletdoublet
Overlap geneKlhl12, Rabif, 4931440L10Rik, Jarid1b
Upstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1
Downstream geneLOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E20.bB6Ng01-040E20.g
ACCDH867315DH867316
length801537
definitionDH867315|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E20, 5' end.DH867316|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,364,614 - 136,365,414)(136,474,622 - 136,475,164)
sequence
gaattccagcggtaaataattaaataagcagaaattggaaacaaggtaaa
ttttctatgcaatattgttacgcattggctgtgtagtagtgtttgttgtg
tgtaggtttatagttaggctgaacttgggaatgaggaatccaacagaggt
ctaatagatatctttgaagcctgtactttaatctccagtgtactagttct
ttgtttgtttgtttgtttgtttgtttgttttttcaagacagggtttctct
gtatagccctagctgtcctggaactcactctgtagaccagactgtcctca
aactcagaaatccgcctgcctctgtctcccaagtgctgggattaaaggct
tgtgccaccatgcccggctcgtactagttctttagacagtagcttctaga
aagatattcggagagccaagtcctatgtatatattccttttgagttttat
ttctccactgaaatagattactgagtgtctgtcctcagtttatataagag
gtggattagaaagtattagaatgggtttaatgctttgacattccatagga
aagtttgctacctaaagaaattctgtggccttccaggcctgccagtgtgt
gtctgtaatcccagtactcaagaggctgacataagatcacaagcttgcct
aggcagcagtgagaccatgtgttctttcctccccccacctcaaaaaaacc
aaaagcaccatagaagaaattctgtgatacactttgtgaaaaccatatgg
tctctgttttgattggctacaaaacaggtgtgtatgttacaaagtaaaag
t
actctgtagtccaggctggccttgaactcacagatccacctgtacctgat
tgcatcttggagtgctgggattaaaggagtgcaccaccaccacccgataa
aagctttaactctttcaaaacagaaattatgagaattgtattattaaaag
gctcaattattttccttagcagtcagaaatgtattccttgggaagacaaa
cagctgaagactgaaggtcctgagagaggactgaaaagcaagtaaacatc
ttccttagtactaacttagcaacaaccacttaaggcacatttaactgtaa
cggttcaaaagcaaaaattagcccacaagagataaccaactattagtatc
catatatttaacatatatttaacatattagatgtttttaattacagaaag
tctgtcgtcattttgaggtctaataattagcaaaatgagaaagtatgctc
aatagaagctacacaatttagtgttctgagccctgaaggcaaaccaacta
aaaacttggtgtcaacagaccattcttgaggaggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136364614_136365414
seq2: B6Ng01-040E20.b_46_846

seq1  GAATTCCAGCGGTAAATAATTAAATAAGCAGAAATTGGAAACAAGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGGTAAATAATTAAATAAGCAGAAATTGGAAACAAGGTAAA  50

seq1  TTTTCTATGCAATATTGTTACGCATTGGCTGTGTAGTAGTGTTTGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGCAATATTGTTACGCATTGGCTGTGTAGTAGTGTTTGTTGTG  100

seq1  TGTAGGTTTATAGTTAGGCTGAACTTGGGAATGAGGAATCCAACAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTTATAGTTAGGCTGAACTTGGGAATGAGGAATCCAACAGAGGT  150

seq1  CTAATAGATATCTTTGAAGCCTGTACTTTAATCTCCAGTGTACTAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGATATCTTTGAAGCCTGTACTTTAATCTCCAGTGTACTAGTTCT  200

seq1  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCAAGACAGGGTTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCAAGACAGGGTTTCTCT  250

seq1  GTATAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGACTGTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGACTGTCCTCA  300

seq1  AACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCT  350

seq1  TGTGCCACCATGCCCGGCTCGTACTAGTTCTTTAGACAGTAGCTTCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCATGCCCGGCTCGTACTAGTTCTTTAGACAGTAGCTTCTAGA  400

seq1  AAGATATTCGGAGAGCCAAGTCCTATGTATATATTCCTTTTGAGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTCGGAGAGCCAAGTCCTATGTATATATTCCTTTTGAGTTTTAT  450

seq1  TTCTCCACTGAAATAGATTACTGAGTGTCTGTCCTCAGTTTATATAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTGAAATAGATTACTGAGTGTCTGTCCTCAGTTTATATAAGAG  500

seq1  GTGGATTAGAAAGTATTAGAATGGGTTTAATGCTTTGACATTCCATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTAGAAAGTATTAGAATGGGTTTAATGCTTTGACATTCCATAGGA  550

seq1  AAGTTTGCTACCTAAAGAAATTCTGTGGCCTTCCAGGCCTGCCAGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCTACCTAAAGAAATTCTGTGGCCTTCCAGGCCTGCCAGTGTGT  600

seq1  GTCTGTAATCCCAGTACTCAAGAGGCTGACATAAGATCACAAGCTTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAATCCCAGTACTCAAGAGGCTGACATAAGATCACAAGCTTGCCT  650

seq1  AGGCAGCAGTGAGACCATGTGTTCTTTCCTCCCCCCACCTCAAAAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAGTGAGACCATGTGTTCTTTCCTCCCCCCACCTCAAAAAAACC  700

seq1  AAAAGCACCATAGAAGAAATTCTGTGATACACTTTGTGAAAACCATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACCATAGAAGAAATTCTGTGATACACTTTGTGAAAACCATATGG  750

seq1  TCTCTGTTTTGATTGGCTACAAAACAGGTGTGTATGTTACAAAGTAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTTGATTGGCTACAAAACAGGTGTGTATGTTACAAAGTAAAAG  800

seq1  T  801
      |
seq2  T  801

seq1: chr1_136474622_136475164
seq2: B6Ng01-040E20.g_68_610 (reverse)

seq1  CAGCCTCCTCAAGAATGGTCTGTTGACACCAAGTTTTTAGTTGGTTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTCAAGAATGGTCTGTTGACACCAAGTTTTTAGTTGGTTTGCC  50

seq1  TTCAGGGCTCAGAACACTAAATTGTGTAGCTTCTATTGAGCATACTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCTCAGAACACTAAATTGTGTAGCTTCTATTGAGCATACTTTCT  100

seq1  CATTTTGCTAATTATTAGACCTCAAAATGACGACAGACTTTCTGTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTAATTATTAGACCTCAAAATGACGACAGACTTTCTGTAATTA  150

seq1  AAAACATCTAATATGTTAAATATATGTTAAATATATGGATACTAATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTAATATGTTAAATATATGTTAAATATATGGATACTAATAGTT  200

seq1  GGTTATCTCTTGTGGGCTAATTTTTGCTTTTGAACCGTTACAGTTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTCTTGTGGGCTAATTTTTGCTTTTGAACCGTTACAGTTAAATG  250

seq1  TGCCTTAAGTGGTTGTTGCTAAGTTAGTACTAAGGAAGATGTTTACTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAGTGGTTGTTGCTAAGTTAGTACTAAGGAAGATGTTTACTTGC  300

seq1  TTTTCAGTCCTCTCTCAGGACCTTCAGTCTTCAGCTGTTTGTCTTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTCCTCTCTCAGGACCTTCAGTCTTCAGCTGTTTGTCTTCCCAA  350

seq1  GGAATACATTTCTGACTGCTAAGGAAAATAATTGAGCCTTTTAATAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACATTTCTGACTGCTAAGGAAAATAATTGAGCCTTTTAATAATAC  400

seq1  AATTCTCATAATTTCTGTTTTGAAAGAGTTAAAGCTTTTATCGGGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATAATTTCTGTTTTGAAAGAGTTAAAGCTTTTATCGGGTGGTG  450

seq1  GTGGTGCACTCCTTTAATCCCAGCACTCCAAGATGCAATCAGGTACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCACTCCTTTAATCCCAGCACTCCAAGATGCAATCAGGTACAGGT  500

seq1  GGATCTGTGAGTTCAAGGCCAGCCTGGACTACAGAGTGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTGAGTTCAAGGCCAGCCTGGACTACAGAGTGAATTC  543