BAC Information

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BAC

Clone NameB6Ng01-040G23
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,442 - 18,835,968116,274,223 - 116,275,171
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040G23.bB6Ng01-040G23.g
ACCDH867402DH867403
length928947
definitionDH867402|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G23, 5' end.DH867403|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(116,274,223 - 116,275,171)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgtcttgcagaaactttggagtttca
ttagatcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatattttcaaagcttttccccgc
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttactacaaggagataagtatggatcgattcgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggctttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tttgtagtaaagctttaggtctggcatggtgattccagcagaagttcttt
taaccttgagaagactttttgctaccctaggttttttgttattccagaca
aatttgcaaattgctccttccaattagttgaagaattgagttggaatttt
gatggggattgcattgaatctatagattgcctttggcaagatagccattt
ttacaatgttgatcctgccaatacatgagcatgagagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagcgtc
gaattcttaagtctataccagtcatttcaagccctgtatgatatagaaga
tacaaatagagctctataaccttcatgtgtcacggggtttttgcactaaa
aaaggaaagcagtcttggaataaatttatgatcaaagaacgtattctttt
tcagttaggtatgagacaattatctggtaactaatggtaataaactggga
ttagacaaattattgtaggtgcatgggaaaaaaattcctaaaatattgac
tagttaatctatacaaaatttcaaaactaattataaaaaaggcagatgat
ttatctctttacaaaactgtgctaaatagtgacataaaatttattgtttt
aaacttagaaataatttattgataactaatatataaaaatgcactaccct
tactgaaaagacatggagacaacattgctgttattccttaactcttatct
gccaagtccttcatggccactgtggaagagacagtgtgacatagtcccat
cccacattcccccagaacagagtcagcaggatgagggcctccagaagtgt
tgatggttgttagacataagggttgtttgtatagtaagtttcaaatttta
tttttattttattttttccattttttattaggtatttagctcatttacat
ttccaatgctataccaaaagtcccccatacccacccacccccactcccct
acccacgtactcacccttttttgccctggcgttccctgtactgcatataa
agtttgcgtgtccaatgggcctctctttccagtgatggccaactaggcca
tcttttgatacatatgcagctagagtcaagagctccggggtactggatag
ttcataatgttgttccacctatagggttgcagatccctttagctccttgg
gtactttctctagctcctccattgggagactgtatccatccattagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-040G23.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||  |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATTGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||| |||||||||| ||||| |||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGCGGGGAAAAGCTTTGAAAATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGATTGAGAATTGACAAATGGGATCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr1_116274223_116275171
seq2: B6Ng01-040G23.g_68_1014

seq1  GAATTCTTAAGTCTATACCAGTCATTTCAAGCCCTGTATGATATAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTCTATACCAGTCATTTCAAGCCCTGTATGATATAGAAGA  50

seq1  TACAAATAGAGCTCTATAACCTTCATGTGTCACGGGGTTTTTGCACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAGAGCTCTATAACCTTCATGTGTCACGGGGTTTTTGCACTAAA  100

seq1  AAAGGAAAGCAGTCTTGGAATAAATTTATGATCAAAGAACGTATTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGCAGTCTTGGAATAAATTTATGATCAAAGAACGTATTCTTTT  150

seq1  TCAGTTAGGTATGAGACAATTATCTGGTAACTAATGGTAATAAACTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGGTATGAGACAATTATCTGGTAACTAATGGTAATAAACTGGGA  200

seq1  TTAGACAAATTATTGTAGGTGCATTGGAAAAAAAATTCCTAAAATATTGA  250
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TTAGACAAATTATTGTAGGTGCA-TGGGAAAAAAATTCCTAAAATATTGA  249

seq1  CTAGTTAATCTATACAAAATTTCAAAACTAATTATAAAAAAGGCAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAATCTATACAAAATTTCAAAACTAATTATAAAAAAGGCAGATGA  299

seq1  TTTATCTCTTTACAAAACTGTGCTAAATAGTGACATAAAATTTATTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTTTACAAAACTGTGCTAAATAGTGACATAAAATTTATTGTTT  349

seq1  TAAACTTAGAAATAATTTATTGATAACTAATATATAAAAATGCACTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAGAAATAATTTATTGATAACTAATATATAAAAATGCACTACCC  399

seq1  TTACTGAAAAGACATGGAGACAACATTGCTGTTATTCCTTAACTCTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAGACATGGAGACAACATTGCTGTTATTCCTTAACTCTTATC  449

seq1  TGCCAAGTCCTTCATGGCCACTGTGGAAGAGACAGTGTGACATAGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCCTTCATGGCCACTGTGGAAGAGACAGTGTGACATAGTCCCA  499

seq1  TCCCACATTCCCCCAGAACAGAGTCAGCAGGATGAGGGCCTCCAGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTCCCCCAGAACAGAGTCAGCAGGATGAGGGCCTCCAGAAGTG  549

seq1  TTGATGGTTGTTAGACATAAGGGTTGTTTGTATAGTAAGTTTCAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTGTTAGACATAAGGGTTGTTTGTATAGTAAGTTTCAAATTTT  599

seq1  ATTTTTATTTTATTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTATTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACA  649

seq1  TTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCC  699

seq1  TACCCACGTACTCACCCTTTTTTGCCCTGGCGTTCCCTGTACTGCATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACGTACTCACCCTTTTTTGCCCTGGCGTTCCCTGTACTGCATATA  749

seq1  AAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCC  799

seq1  ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGATA  849

seq1  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG  899

seq1  GGTACTTTCTCTAGCTCCTCCATTGGGAGAACTGTATCCATCCATTAGC  949
      ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTACTTTCTCTAGCTCCTCCATTGGGAG-ACTGTATCCATCCATTAGC  947