BAC Information

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BAC

Clone NameB6Ng01-040L07
Chromosome1 (Build37)
Map Location 42,424,180 - 42,568,562
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L07.bB6Ng01-040L07.g
ACCDH867587DH867588
length1,200586
definitionDH867587|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L07, 5' end.DH867588|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,424,180 - 42,425,395)(42,567,977 - 42,568,562)
sequence
gaattcaaaagcatgtttttttaatcttatgtattccttacattgtactt
caacgttttacattgaaaaactgatgtattaagacgtatataaagttagt
gaaatcatttcctgtttcctttactgatgaaggaggagaaaaagcacaca
tctaactaatccatttctacacagtatgtaaggggacagtgagtcaggta
ccatcttggataagtggctttctcttatatactttccaatgtggaacttg
gttgcaatagctaaagtagaacactaagtcatatgggcagagtttgcaac
accaacgccctgaagtcttcaggaagaggtcatcatgtcttcccaccaat
tctggtctttctcattattctaaatcttgggaaagtggacaaatacctcc
tttgacttttgctctaaggatgcatgcaatctcctccctttgcctcctgc
aaaaggaaggcaggcacatcttcctgggagcatcttagaactcaaagata
ccctaaaaactcttagctgcgtgtggtgagatatactggacaaatgcaaa
gtcgtatttctactcgagaagcctctgtttcaatatctgtctcaggcttg
ccctgatggtttaagagttaggtgttattatactatttctgacaagtttt
gttacctccagatgtccccatgtcaccctctgccccaagaaggaaatgtt
gtgagtcctttaccggcttacactgcagtccttggagccaacaaaacatt
gcaaatcagtttcatgcttctagatttgaaaaaaggaatgtggatatctc
ccatcatactttcagcctctttcagaatctggaatgccttgggttgaggc
ccacatttccaagacaagactccagagcctcacataagagcttgtatatt
ccttaactcatgaatgcatatatcgattggactgaaaatgaaagaacaga
cccagttatagttggaagctgcttgcaatcctagacagtggaggtaagat
ccataagctaacatagggagaagagcgctcccctttctccctctctccct
ttccctgcttcctccctctcctgctcctctccctttcatcacccctctct
ttctccctgtttctccctctccctttgctcaagttcctgcggggtgaaca
ggaaactgactcctgaatacatgaaaatgaggtggaattggaactcaatc

gaattcaaatctcctccttcaaattcataacatgcctgggctctgccttt
ctctaagggagctttattttccattcatttccctgtggaggtcacacctg
ccccacataattccctgggcaaagctagagaaaaaaacccagcaacgttc
ttacggcatctgggtatatatttaaatctatttcagtaagtatttgttga
atgtttactatattgcagatacaaggtactgtgggctgggaggtaattga
gagtgctggtagatgcagaaatacagagagagttgcactcgtctaggttt
gggtctggaaaagctctactcacacagatcccgtgcaatgatggagactt
gcgactagaaaagacaaagcatcctgaaggaaccagaaggaacattactg
atggccttggagtgtgggccagattcattaactagacggaggacagggat
agggtgttgaggaagatcgcggagggtccaaagaccaggttaagaagaga
gggtgttaaagggctgccaatagacggtagatggaggcgccaattccaca
ggtgcactccactggggtgggggttagtagggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42424180_42425395
seq2: B6Ng01-040L07.b_43_1242

seq1  GAATTCAAAAGCATGTTTTTTTAATCTTATGTATTCCTTACATTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCATGTTTTTTTAATCTTATGTATTCCTTACATTGTACTT  50

seq1  CAACGTTTTACATTGAAAAACTGATGTATTAAGACGTATATAAAGTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTTTACATTGAAAAACTGATGTATTAAGACGTATATAAAGTTAGT  100

seq1  GAAATCATTTCCTGTTTCCTTTACTGATGAAGGAGGAGAAAAAGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTTCCTGTTTCCTTTACTGATGAAGGAGGAGAAAAAGCACACA  150

seq1  TCTAACTAATCCATTTCTACACAGTATGTAAGGGGACAGTGAGTCAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAATCCATTTCTACACAGTATGTAAGGGGACAGTGAGTCAGGTA  200

seq1  CCATCTTGGATAAGTGGCTTTCTCTTATATACTTTCCAATGTGGAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGGATAAGTGGCTTTCTCTTATATACTTTCCAATGTGGAACTTG  250

seq1  GTTGCAATAGTTAAAGTAGAACACTAAGTCATATGGGCAGAGTTTGCAAC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAATAGCTAAAGTAGAACACTAAGTCATATGGGCAGAGTTTGCAAC  300

seq1  ACCAACGCCCTGAAGTCTTCAGGAAGAGGTCATCATGTCTTCCCACCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGCCCTGAAGTCTTCAGGAAGAGGTCATCATGTCTTCCCACCAAT  350

seq1  TCTGGTCTTTCTCATTATTCTAAATCTTGGGAAAGTGGACAAATACCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTTTCTCATTATTCTAAATCTTGGGAAAGTGGACAAATACCTCC  400

seq1  TTTGACTTTTGCTCTAAGGATGCATGCAATCTCCTCCCTTTGCCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTTGCTCTAAGGATGCATGCAATCTCCTCCCTTTGCCTCCTGC  450

seq1  AAAAGGAAGGCAGGCACATCTTCCTGGGAGCATCTTAGAACTCAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGCAGGCACATCTTCCTGGGAGCATCTTAGAACTCAAAGATA  500

seq1  CCCTAAAAACTCTTAGCTGCGTGTGGTGAGATATACTGGACAAATGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAACTCTTAGCTGCGTGTGGTGAGATATACTGGACAAATGCAAA  550

seq1  GTCGTATTTCTACTCGAGAAGCCTCTGTTTCAATATCTGTCTCAGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATTTCTACTCGAGAAGCCTCTGTTTCAATATCTGTCTCAGGCTTG  600

seq1  CCCTGATGGTTTAAGAGTTAGGTGTTATTATACTATTTCTGACAAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGTTTAAGAGTTAGGTGTTATTATACTATTTCTGACAAGTTTT  650

seq1  GTTACCTCCAGATGTCCCCATGTCACCCTCTGCCCCAAGAAGGAAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTCCAGATGTCCCCATGTCACCCTCTGCCCCAAGAAGGAAATGTT  700

seq1  GTGAGTCCTTTACCGGCTTACACTGCAGTCCTTGGAGCCAACAAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCTTTACCGGCTTACACTGCAGTCCTTGGAGCCAACAAAACATT  750

seq1  GCAAATCAGTTTCATGCTTCTAGATTTGAAAAAAGGAATGTGGATATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAGTTTCATGCTTCTAGATTTGAAAAAAGGAATGTGGATATCTC  800

seq1  CCATCATACTTTCAGCCTCTTTCAGAATCTGGAATGCCTTGGGTTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATACTTTCAGCCTCTTTCAGAATCTGGAATGCCTTGGGTTGAGGC  850

seq1  CCACATTTCCAAGACAAGACTCCAGAGCCTCACATAAGAGCTTGTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTCCAAGACAAGACTCCAGAGCCTCACATAAGAGCTTGTATATT  900

seq1  CCTTAACTCATGAATGCATATATCGATTGGACTGAAAATGAAAAGAACAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTAACTCATGAATGCATATATCGATTGGACTGAAAATG-AAAGAACAG  949

seq1  ACCCAGTTATAGTTGGAAGCTGCTTGCAATCCTAGACAGTGGAGGTAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCCAGTTATAGTTGGAAGCTGCTTGCAATCCTAGACAGTGGAGGTAA-G  998

seq1  ATCCATAAGCTAACATAGGGAGAAGAGCGCTCCCCCTTTCTCCCTCTCTC  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCCATAAGCTAACATAGGGAGAAGAGCGCT-CCCCTTTCTCCCTCTCTC  1047

seq1  CCTTTCCCTGCTTCCTCCCTCTCCTGCTCCTTCTCCCTTTCCATCA-CTC  1099
      |||||||||||||||||||||||||||||| ||||||||| ||||| | |
seq2  CCTTTCCCTGCTTCCTCCCTCTCCTGCTCC-TCTCCCTTT-CATCACCCC  1095

seq1  TCTCTTTCTCCCTGTCTCTCCCTCTCCCTTTTGCTCAATGTTCCTGCCTG  1149
      ||||||||||||||| |||||||||||| ||||||||| ||||||||  |
seq2  TCTCTTTCTCCCTGTTTCTCCCTCTCCC-TTTGCTCAA-GTTCCTGC--G  1141

seq1  GGGTGAACAGGAGACTAGACTTCCTTGAATACAATTGAAAAATGAGTGTT  1199
      |||||||||||| ||| ||||  | ||||||||  || |||||||| || 
seq2  GGGTGAACAGGAAACT-GACT--CCTGAATACA--TG-AAAATGAG-GTG  1184

seq1  GAGATTTGGACTCAATC  1216
      || ||| | ||||||||
seq2  GA-ATTGGAACTCAATC  1200

seq1: chr1_42567977_42568562
seq2: B6Ng01-040L07.g_67_652 (reverse)

seq1  CAATCCCTACTAACCCCCACCCCAGTGGAGTGCACCTGTGGAATTGGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTACTAACCCCCACCCCAGTGGAGTGCACCTGTGGAATTGGCGC  50

seq1  CTCCATCTACCGTCTATTGGCAGCCCTTTAACACCCTCTCTTCTTAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTACCGTCTATTGGCAGCCCTTTAACACCCTCTCTTCTTAACCT  100

seq1  GGTCTTTGGACCCTCCGCGATCTTCCTCAACACCCTATCCCTGTCCTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGGACCCTCCGCGATCTTCCTCAACACCCTATCCCTGTCCTCCG  150

seq1  TCTAGTTAATGAATCTGGCCCACACTCCAAGGCCATCAGTAATGTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTAATGAATCTGGCCCACACTCCAAGGCCATCAGTAATGTTCCTT  200

seq1  CTGGTTCCTTCAGGATGCTTTGTCTTTTCTAGTCGCAAGTCTCCATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTTCAGGATGCTTTGTCTTTTCTAGTCGCAAGTCTCCATCATT  250

seq1  GCACGGGATCTGTGTGAGTAGAGCTTTTCCAGACCCAAACCTAGACGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGATCTGTGTGAGTAGAGCTTTTCCAGACCCAAACCTAGACGAGT  300

seq1  GCAACTCTCTCTGTATTTCTGCATCTACCAGCACTCTCAATTACCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTCTCTGTATTTCTGCATCTACCAGCACTCTCAATTACCTCCCA  350

seq1  GCCCACAGTACCTTGTATCTGCAATATAGTAAACATTCAACAAATACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTACCTTGTATCTGCAATATAGTAAACATTCAACAAATACTTA  400

seq1  CTGAAATAGATTTAAATATATACCCAGATGCCGTAAGAACGTTGCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAGATTTAAATATATACCCAGATGCCGTAAGAACGTTGCTGGGT  450

seq1  TTTTTTCTCTAGCTTTGCCCAGGGAATTATGTGGGGCAGGTGTGACCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTAGCTTTGCCCAGGGAATTATGTGGGGCAGGTGTGACCTCC  500

seq1  ACAGGGAAATGAATGGAAAATAAAGCTCCCTTAGAGAAAGGCAGAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATGAATGGAAAATAAAGCTCCCTTAGAGAAAGGCAGAGCCCA  550

seq1  GGCATGTTATGAATTTGAAGGAGGAGATTTGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTATGAATTTGAAGGAGGAGATTTGAATTC  586