BAC Information

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BAC

Clone NameB6Ng01-040M12
Chromosome1 (Build37)
Map Location 83,987,490 - 84,144,548
singlet/doubletdoublet
Overlap gene5033414K04Rik
Upstream geneEG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040M12.bB6Ng01-040M12.g
ACCDH867643DH867644
length9991,030
definitionDH867643|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M12, 5' end.DH867644|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,987,490 - 83,988,492)(84,143,502 - 84,144,548)
sequence
gaattcaacaaaattttggttactcatacagcttgaattcttgtctagta
agcctgtataatcttggaataaaaaacaaaatctttcatatttcaaaagc
tgtacttccccagagtctgaccacttatttaattgctatgtgaatcttta
tagctattatatttgtggacattttacatatgtgggtgtacataggcaga
gaattattgcctataaaattgcttttagaagtatagtatgttggtaaggt
gtttgtcctttaagaatgaggacaaaagcttgctccctagctctcttgta
caaaaggtaagagtatgtacttgcaaccctagtgctgtgagagagaggat
gaccactggggcttgctggacaacttgtatagtcaaagtggtaagctcta
ggttcaataaagatatagctcagagattacaggcactgactgctcttcca
gaggaactgggttcacttctcagcaaccacattgcatctcacaacggtct
ataacttcaagatctgacaccctcacacagaagagcaagtgtgagagtgg
ttgcaagaggaaggtgaatagaatcaaaatctcaaagaattaattaaaat
attaagaaccaaagtggaatgtgtttgagaaagacatgtaatatcaatct
ctggctcccacacacaggagcacacagccatacatgtgttttcatataga
aagtatgcataaacatacatttagtttgagaatttagagaattagatcag
ataatacatgactgggctggaagtcagatttaacaaaaatcacatagaat
ctcatggctctcctttattcaatatttccaacaatgagcttggccgaaag
cctgcttctatcaaaatttcagatactataaagttaaataatgagagcaa
gtgagagttatagatgacaagttgtaagaaatctaaaattttagctcttt
atggcctccttatgctttaaactgaacacttcttcaagaataactattt
gaattctgctgtcacagtatgagttcatcaggggatggatccatccactc
catcagaacccttcatctaaaatttcctggaaatatcatcgtagacacac
ccagagatgtgctttcctgacctcctagacatgactcgatctggtggagt
taacagtggaagtaactgtcacaagctgagatgcccagagcagacttagt
ctctgccccttgtttttaatgttcctctaaattagggtggggcacagcta
atctgtatttttttcttctttctcagattctattgtgaacaatctaaaca
ctctcatttcttgcccctttaaatttaaggaaaaaaaaaaaaaacccaac
agtagctaaaagcttttgtttagcagataagcttcaatttaaaacaaaat
taattattgttgtcagcagtcactgggagttcagaggacaattttgtaaa
gtcacctttactctttccactttatatggttgtggaaattgaacccagct
ccctaagtttgcaccgcaagagccatactgagctttctcatggacgctaa
cagatgtgtttccagtttttttttaaaacaattactccctgtggacttgt
agatttctttaaggttttcctttcttgaatctattctcttctcccctcac
cccaatcttcttttctaagtttctttcttcatttatacttcaaactcttt
aatggcccgggtattaatgaaagaaaaaaaaaaggtaaatagaaactttg
gatgctgtggactgaaataatagtgaacccggactatcataaccttctaa
agtgatttgttttctcctctatagattctaacagagggtcaactttgatg
tactcctgggcttctctaggggtctgctctgtaatatcaaactctgcttg
ccctcatctctagtcgtttagtctggttcttcttatgataacacaagttg
gcttagagtccaggctcactctgcccaacctgtgcactttggaggcttgg
cccaatttttaccatgcctttgactagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83987490_83988492
seq2: B6Ng01-040M12.b_46_1044

seq1  GAATTCAACAAAATTTTGGTTACTCATACAGCTTGAATTCTTGTCTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAATTTTGGTTACTCATACAGCTTGAATTCTTGTCTAGTA  50

seq1  AGCCTGTATAATCTTGGAATAAAAAACAAAATCTTTCATATTTCAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATAATCTTGGAATAAAAAACAAAATCTTTCATATTTCAAAAGC  100

seq1  TGTACTTCCCCAGAGTCTGACCACTTATTTAATTGCTATGTGAATCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCCCCAGAGTCTGACCACTTATTTAATTGCTATGTGAATCTTTA  150

seq1  TAGCTATTATATTTGTGGACATTTTACATATGTGGGTGTACATAGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTATATTTGTGGACATTTTACATATGTGGGTGTACATAGGCAGA  200

seq1  GAATTATTGCCTATAAAATTGCTTTTAGAAGTATAGTATGTTGGTAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTGCCTATAAAATTGCTTTTAGAAGTATAGTATGTTGGTAAGGT  250

seq1  GTTTGTCCTTTAAGAATGAGGACAAAAGCTTGCTCCCTAGCTCTCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCTTTAAGAATGAGGACAAAAGCTTGCTCCCTAGCTCTCTTGTA  300

seq1  CAAAAGGTAAGAGTATGTACTTGCAACCCTAGTGCTGTGAGAGAGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTAAGAGTATGTACTTGCAACCCTAGTGCTGTGAGAGAGAGGAT  350

seq1  GACCACTGGGGCTTGCTGGACAACTTGTATAGTCAAAGTGGTAAGCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGGGGCTTGCTGGACAACTTGTATAGTCAAAGTGGTAAGCTCTA  400

seq1  GGTTCAATAAAGATATAGCTCAGAGATTACAGGCACTGACTGCTCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATAAAGATATAGCTCAGAGATTACAGGCACTGACTGCTCTTCCA  450

seq1  GAGGAACTGGGTTCACTTCTCAGCAACCACATTGCATCTCACAACGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGGGTTCACTTCTCAGCAACCACATTGCATCTCACAACGGTCT  500

seq1  ATAACTTCAAGATCTGACACCCTCACACAGAAGAGCAAGTGTGAGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCAAGATCTGACACCCTCACACAGAAGAGCAAGTGTGAGAGTGG  550

seq1  TTGCAAGAGGAAGGTGAATAGAATCAAAATCTCAAAGAATTAATTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAGGAAGGTGAATAGAATCAAAATCTCAAAGAATTAATTAAAAT  600

seq1  ATTAAGAACCAAAGTGGAATGTGTTTGAGAAAGACATGTAATATCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAACCAAAGTGGAATGTGTTTGAGAAAGACATGTAATATCAATCT  650

seq1  CTGGCTCCCACACACAGGAGCACACAGCCATACATGTGTTTTCATATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCACACACAGGAGCACACAGCCATACATGTGTTTTCATATAGA  700

seq1  AAGTATGCATAAACATACATTTAGTTTGAGAATTTAGAGAATTAGATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCATAAACATACATTTAGTTTGAGAATTTAGAGAATTAGATCAG  750

seq1  ATAATACATGACTGGGCTGGAAGTCAGATTTAACAAAAATCACATAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACATGACTGGGCTGGAAGTCAGATTTAACAAAAATCACATAGAAT  800

seq1  CTCATGGCTCTCCTTTATTCAATATTTCCAACAATGAGCTTGGCCGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCTCTCCTTTATTCAATATTTCCAACAATGAGCTTGGCCGAAAG  850

seq1  CCTGCTTCTATCAAAATTTCAGATACTATAAAGTTAAATAATGAGAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTATCAAAATTTCAGATACTATAAAGTTAAATAATGAGAGCAA  900

seq1  GTGAGAGTTTATAGATGACAAGTTGTAAG-AATCTAAAATTCTAAGCTCT  949
      ||||||| ||||||||||||||||||||| ||||||||||| | ||||||
seq2  GTGAGAG-TTATAGATGACAAGTTGTAAGAAATCTAAAATT-TTAGCTCT  948

seq1  TTATGGCACTCCTTATGCATATAAACATGAACACTTCTTCAAGAATAACT  999
      ||||||| |||||||||| | ||||| |||||||||||||||||||||||
seq2  TTATGGC-CTCCTTATGC-TTTAAAC-TGAACACTTCTTCAAGAATAACT  995

seq1  ATTT  1003
      ||||
seq2  ATTT  999

seq1: chr1_84143502_84144548
seq2: B6Ng01-040M12.g_69_1098 (reverse)

seq1  GAACATAGTCAAAGGCAACTGGTTAAAATATTAGGACAAAGCCTTCCAAA  50
      |||| ||||||||||||  |||| ||||   | || | ||||| ||||||
seq2  GAAC-TAGTCAAAGGCA--TGGTAAAAA---TTGGGCCAAGCC-TCCAAA  43

seq1  GTGCACGAGGTTGGGCAGAGTTGAGGCCTGGACTTCTTAAGCCAACTTGT  100
      |||||| ||||||||||||| ||| |||||||||   |||||||||||||
seq2  GTGCAC-AGGTTGGGCAGAG-TGA-GCCTGGACT--CTAAGCCAACTTGT  88

seq1  GTTATCATAAGAAGAACCAGACTAAAACGAACTAGAGATGAGGGCAAGCA  150
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GTTATCATAAGAAGAACCAGACT-AAACG-ACTAGAGATGAGGGCAAGCA  136

seq1  GAAGTTTGATATTACAGAGCAAGACCCCTAGAGAAGCCCAGGAGTACATC  200
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  G-AGTTTGATATTACAGAGC-AGACCCCTAGAGAAGCCCAGGAGTACATC  184

seq1  AAAGTTGACCCTTCTGTTAGAATCTATAGAGGAGAAAACAAATCACTTTA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGACCC-TCTGTTAGAATCTATAGAGGAGAAAACAAATCACTTTA  233

seq1  GAAGGTTATGATAGTCCGGGTTCACTATTATTTCAGTCCACAGCATCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTATGATAGTCCGGGTTCACTATTATTTCAGTCCACAGCATCCAA  283

seq1  AGTTTCTATTTACCTTTTTTTTTTCTTTCATTAATACCCGGGCCATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATTTACCTTTTTTTTTTCTTTCATTAATACCCGGGCCATTAAA  333

seq1  GAGTTTGAAGTATAAATGAAGAAAGAAACTTAGAAAAGAAGATTGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAAGTATAAATGAAGAAAGAAACTTAGAAAAGAAGATTGGGGTG  383

seq1  AGGGGAGAAGAGAATAGATTCAAGAAAGGAAAACCTTAAAGAAATCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGAGAATAGATTCAAGAAAGGAAAACCTTAAAGAAATCTACA  433

seq1  AGTCCACAGGGAGTAATTGTTTTAAAAAAAAACTGGAAACACATCTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACAGGGAGTAATTGTTTTAAAAAAAAACTGGAAACACATCTGTTA  483

seq1  GCGTCCATGAGAAAGCTCAGTATGGCTCTTGCGGTGCAAACTTAGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCATGAGAAAGCTCAGTATGGCTCTTGCGGTGCAAACTTAGGGAGC  533

seq1  TGGGTTCAATTTCCACAACCATATAAAGTGGAAAGAGTAAAGGTGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAATTTCCACAACCATATAAAGTGGAAAGAGTAAAGGTGACTTT  583

seq1  ACAAAATTGTCCTCTGAACTCCCAGTGACTGCTGACAACAATAATTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGTCCTCTGAACTCCCAGTGACTGCTGACAACAATAATTAATT  633

seq1  TTGTTTTAAATTGAAGCTTATCTGCTAAACAAAAGCTTTTAGCTACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAATTGAAGCTTATCTGCTAAACAAAAGCTTTTAGCTACTGTT  683

seq1  GGGTTTTTTTTTTTTTTCCTTAAATTTAAAGGGGCAAGAAATGAGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTTTTTTTTCCTTAAATTTAAAGGGGCAAGAAATGAGAGTGT  733

seq1  TTAGATTGTTCACAATAGAATCTGAGAAAGAAGAAAAAAATACAGATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGTTCACAATAGAATCTGAGAAAGAAGAAAAAAATACAGATTAG  783

seq1  CTGTGCCCCACCCTAATTTAGAGGAACATTAAAAACAAGGGGCAGAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCCACCCTAATTTAGAGGAACATTAAAAACAAGGGGCAGAGACT  833

seq1  AAGTCTGCTCTGGGCATCTCAGCTTGTGACAGTTACTTCCACTGTTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCTCTGGGCATCTCAGCTTGTGACAGTTACTTCCACTGTTAACT  883

seq1  CCACCAGATCGAGTCATGTCTAGGAGGTCAGGAAAGCACATCTCTGGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGATCGAGTCATGTCTAGGAGGTCAGGAAAGCACATCTCTGGGTG  933

seq1  TGTCTACGATGATATTTCCAGGAAATTTTAGATGAAGGGTTCTGATGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACGATGATATTTCCAGGAAATTTTAGATGAAGGGTTCTGATGGAG  983

seq1  TGGATGGATCCATCCCCTGATGAACTCATACTGTGACAGCAGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATCCATCCCCTGATGAACTCATACTGTGACAGCAGAATTC  1030