BAC Information

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BAC

Clone NameB6Ng01-040M23
Chromosome1 (Build37)
Map Location 150,586,114 - 150,721,961
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040M23.bB6Ng01-040M23.g
ACCDH867663DH867664
length1,1141,097
definitionDH867663|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M23, 5' end.DH867664|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,586,114 - 150,587,238)(150,720,855 - 150,721,961)
sequence
gaattcattcacgctataaaacttaaagaattgactcttttgcccttcac
acttagaaactctctcttattagaaggaaagtataaatggatcactttgt
acttgtttcacacttttaagcaatagtgtgaaagtaagagttggtagctg
cccaggaagtatactttctataaaatttagtgttcaaaaaatttggattt
ttcaattagcttatattccctagaaaccagaaactaatatttatctgtaa
ccaaggaaatacaaaaatatatgagactgttgttcatggatgcatggtat
ttaaaagtcaaaacatttttagtttgcatattgactataaatagttgcta
tttgtccagtttataccttagcaatcatggtgaaaataaacaaaacatat
tatttttaaattttacaataacttaaaaattgtagttgctttgttctaaa
tgattctccttatgattctcagtattcagtcagaattaattcacggaaga
acaaataactcttcccacaaagcagtattaagagaacttctggctgcacg
gaggggtaagggagcaatgtgatcacacccattaacaatatatatgtatc
ttacaaaataatgtcagaagatgaagatattcactgttaaacaaagatta
ggcatgatatttatgtttttgacacagaactcatttttaaatagaaaaat
tactcatgaaattgaaagtcaaggccaatgggatagctccatggtaaatg
ttctggttgccaagactggcctcatgacttcaatcctgggacacatgtta
aagaaacaacaacaacaaacatttggcaagttgtctaatgtacacattag
aatctcatgtagctaccttgcacataacaacagggagaggtggaagagag
agagtaaagaatgaaggagagaacaaatacaggatttattattttcttta
aatgatattaagttttgtgtggcaactcagctgaataatctccacattta
taggataaggaaagaagattaccaggattagaagtacatcctggaccaac
ataggagtcattccagcaagggcctataggataaaactctgtccaatcta
gaaatgagtcagat
gaattctaggttttgtcattgttgcttatctgttcatttcatcatataaa
taacatttatttatgatataaagcatagtttcacttgaaccctatcaaat
attacatagtttattttagtaagaaatgcacattctgttatatacctaac
agacatgtatagtatttcaatataaagaaattggtttatttgaatttggc
tttcaggaaaattagtcaatgtttggtatattttaataattttcttgtaa
atatattttaatatttatggatatttaatcatctttccttcacattattc
tcagtttgctaatttaattatagaaggtgatatttttgcaagacagtgaa
aatgccttattgtatttctttttgatctaacagtctagaatgatttctcc
taatcataaaaatacccaagcacattcagtggggacatttgacaccatca
tgatacactcttttgttcatgcaacactcagaactcatttgattcatggg
cagtattttcaagagttgtatattaaaatctatgcttccactttgtttct
gcgtgaaaataatttcatctcaatatactaaataagttccattaaactac
attttaccagaaacacatcactgtgatctaaaagaaaggaactaccttct
atgtaaattatagcaacagtttagattaagagtagagaattaaatatata
aatgaatttcctcaaataaaatatagctcatcaaaattaatgacctgtcc
atcatacatcttttacattacattacatgattcaaaaaaataaagaatta
tgactataattcaaatttacattgattagcttcagtagggcaaatgtcct
atgacagcgtagtatagcatgacaccctgtggtgatttggataggaatgg
cctccatagacttgtggataaaatgtttggcccatatcgcttgttggagg
agtgtgtcactggagacgggtaataaggttctttcagtgctcatgctagg
ctagtggtgtcaccttctctgtggcctgtggatcagatgaagaaatctcc
tgctactctcagacaccatgtctgcatggcatctgcatttccttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150586114_150587238
seq2: B6Ng01-040M23.b_41_1154

seq1  GAATTCATTCACGCTATAAAACTTAAAGAATTGACTCTTTTGCCCTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACGCTATAAAACTTAAAGAATTGACTCTTTTGCCCTTCAC  50

seq1  ACTTAGAAACTCTCTCTTATTAGAAGGAAAGTATAAATGGATCACTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAACTCTCTCTTATTAGAAGGAAAGTATAAATGGATCACTTTGT  100

seq1  ACTTGTTTCACACTTTTAAGCAATAGTGTGAAAGTAAGAGTTGGTAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCACACTTTTAAGCAATAGTGTGAAAGTAAGAGTTGGTAGCTG  150

seq1  CCCAGGAAGTATACTTTCTATAAAATTTAGTGTTCAAAAAATTTGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGTATACTTTCTATAAAATTTAGTGTTCAAAAAATTTGGATTT  200

seq1  TTCAATTAGCTTATATTCCCTAGAAACCAGAAACTAATATTTATCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAGCTTATATTCCCTAGAAACCAGAAACTAATATTTATCTGTAA  250

seq1  CCAAGGAAATACAAAAATATATGAGACTGTTGTTCATGGATGCATGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAATACAAAAATATATGAGACTGTTGTTCATGGATGCATGGTAT  300

seq1  TTAAAAGTCAAAACATTTTTAGTTTGCATATTGACTATAAATAGTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCAAAACATTTTTAGTTTGCATATTGACTATAAATAGTTGCTA  350

seq1  TTTGTCCAGTTTATACCTTAGCAATCATGGTGAAAATAAACAAAACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGTTTATACCTTAGCAATCATGGTGAAAATAAACAAAACATAT  400

seq1  TATTTTTAAATTTTACAATAACTTAAAAATTGTAGTTGCTTTGTTCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATTTTACAATAACTTAAAAATTGTAGTTGCTTTGTTCTAAA  450

seq1  TGATTCTCCTTATGATTCTCAGTATTCAGTCAGAATTAATTCACGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCCTTATGATTCTCAGTATTCAGTCAGAATTAATTCACGGAAGA  500

seq1  ACAAATAACTCTTCCCACAAAGCAGTATTAAGAGAACTTCTGGCTGCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACTCTTCCCACAAAGCAGTATTAAGAGAACTTCTGGCTGCACG  550

seq1  GAGGGGTAAGGGAGCAATGTGATCACACCCATTAACAATATATATGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTAAGGGAGCAATGTGATCACACCCATTAACAATATATATGTATC  600

seq1  TTACAAAATAATGTCAGAAGATGAAGATATTCACTGTTAAACAAAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATAATGTCAGAAGATGAAGATATTCACTGTTAAACAAAGATTA  650

seq1  GGCATGATATTTATGTTTTTGACACAGAACTCATTTTTAAATAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATATTTATGTTTTTGACACAGAACTCATTTTTAAATAGAAAAAT  700

seq1  TACTCATGAAATTGAAAGTCAAGGCCAATGGGATAGCTCCATGGTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAAATTGAAAGTCAAGGCCAATGGGATAGCTCCATGGTAAATG  750

seq1  TTCTGGTTGCCAAGACTGGCCTCATGACTTCAATCCTGGGACACATGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGCCAAGACTGGCCTCATGACTTCAATCCTGGGACACATGTTA  800

seq1  AAGAAACAACAACAACAAACA-TTGGCAAGTTGTCTAATGTACACATTAG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAAACAACAACAACAAACATTTGGCAAGTTGTCTAATGTACACATTAG  850

seq1  AATCTTCATGTAGCTACCTTGCACATAACAACAGGGAGAGGTGGAAGAGA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATC-TCATGTAGCTACCTTGCACATAACAACAGGGAGAGGTGGAAGAGA  899

seq1  GAGAGTAAAAGAATGAAGGAGAGAACAAAATACAGGATTTAATTATTTTC  949
      |||||| ||||||||||||||||||| ||||||||||||| |||||||||
seq2  GAGAGT-AAAGAATGAAGGAGAGAAC-AAATACAGGATTT-ATTATTTTC  946

seq1  TTTTAAAATGATATTAAGTTTTGTGTGGCAACTCAGGCTGAATAATCTCC  999
      |||  |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTT--AAATGATATTAAGTTTTGTGTGGCAACTCA-GCTGAATAATCTCC  993

seq1  ACATTTATAAGGATAAGGAAAGAAGATTACCAGGAATTAG-AGTACATCC  1048
      |||||||| ||||||||||||||||||||||||| ||||| |||||||||
seq2  ACATTTAT-AGGATAAGGAAAGAAGATTACCAGG-ATTAGAAGTACATCC  1041

seq1  T-GACCAACATAAGGAGTTCATTCCAGCAAGGG-CTATAGGATAAAACTC  1096
      | ||||||||| ||||| ||||||||||||||| ||||||||||||||||
seq2  TGGACCAACAT-AGGAG-TCATTCCAGCAAGGGCCTATAGGATAAAACTC  1089

seq1  TGTCTCAATACACAGAAAATGAGTCAGAT  1125
      |||| ||||   |   |||||||||||||
seq2  TGTC-CAAT---CTAGAAATGAGTCAGAT  1114

seq1: chr1_150720855_150721961
seq2: B6Ng01-040M23.g_71_1167 (reverse)

seq1  TGCAAGGGAAATGGCAGAATGCATGCAGACATGGTGCTGGAGAGGTAGCA  50
      ||||| |||||| |||||   |||||||||||||||   |||| ||||||
seq2  TGCAA-GGAAAT-GCAGATGCCATGCAGACATGGTGTCTGAGA-GTAGCA  47

seq1  GG-GAGTTCTACATCTTGATCCACAGGCAACAGGAGAAGGTTGACA-CAC  98
      || || |||| |||| |||||||||||| ||| ||||||| ||||| |||
seq2  GGAGATTTCTTCATC-TGATCCACAGGCCACA-GAGAAGG-TGACACCAC  94

seq1  TAGGCTTAGCATGAGCACTTGAAAGATACCTTAATACCCGTCTCCAGTGA  148
      || || |||||||||||| ||||||| |||||| ||||||||||||||||
seq2  TA-GCCTAGCATGAGCAC-TGAAAGA-ACCTTATTACCCGTCTCCAGTGA  141

seq1  CACACTTCCTCCAACAAGGCGATATGGGCCAAACATTTTTATCCACAAGT  198
      ||||| ||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CACAC-TCCTCCAACAA-GCGATATGGGCCAAACA-TTTTATCCACAAGT  188

seq1  CTATGGAGGCCATTCCTATCCAAATCACCACAGGGTGTCATGCTATACCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTATGGAGGCCATTCCTATCCAAATCACCACAGGGTGTCATGCTATA-CT  237

seq1  ACGCTGTCATAGGACATTTGCCCTACTGAAGCTAATCAATGTAAATTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTCATAGGACATTTGCCCTACTGAAGCTAATCAATGTAAATTTGA  287

seq1  ATTATAGTCATAATTCTTTATTTTTTTGAATCATGTAATGTAATGTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTCATAATTCTTTATTTTTTTGAATCATGTAATGTAATGTAAAA  337

seq1  GATGTATGATGGACAGGTCATTAA-TTTGATGAGCTATATTTTATTTGAG  397
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGTATGATGGACAGGTCATTAATTTTGATGAGCTATATTTTATTTGAG  387

seq1  GAAATTCATTTATATATTTAATTCTCTACTCTTAATCTAAACTGTTGCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTTATATATTTAATTCTCTACTCTTAATCTAAACTGTTGCTA  437

seq1  TAATTTACATAGAAGGTAGTTCCTTTCTTTTAGATCACAGTGATGTGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATAGAAGGTAGTTCCTTTCTTTTAGATCACAGTGATGTGTTT  487

seq1  CTGGTAAAATGTAGTTTAATGGAACTTATTTAGTATATTGAGATGAAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAATGTAGTTTAATGGAACTTATTTAGTATATTGAGATGAAATT  537

seq1  ATTTTCACGCAGAAACAAAGTGGAAGCATAGATTTTAATATACAACTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACGCAGAAACAAAGTGGAAGCATAGATTTTAATATACAACTCTT  587

seq1  GAAAATACTGCCCATGAATCAAATGAGTTCTGAGTGTTGCATGAACAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACTGCCCATGAATCAAATGAGTTCTGAGTGTTGCATGAACAAAA  637

seq1  GAGTGTATCATGATGGTGTCAAATGTCCCCACTGAATGTGCTTGGGTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATCATGATGGTGTCAAATGTCCCCACTGAATGTGCTTGGGTATT  687

seq1  TTTATGATTAGGAGAAATCATTCTAGACTGTTAGATCAAAAAGAAATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTAGGAGAAATCATTCTAGACTGTTAGATCAAAAAGAAATACA  737

seq1  ATAAGGCATTTTCACTGTCTTGCAAAAATATCACCTTCTATAATTAAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCATTTTCACTGTCTTGCAAAAATATCACCTTCTATAATTAAATT  787

seq1  AGCAAACTGAGAATAATGTGAAGGAAAGATGATTAAATATCCATAAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGAGAATAATGTGAAGGAAAGATGATTAAATATCCATAAATAT  837

seq1  TAAAATATATTTACAAGAAAATTATTAAAATATACCAAACATTGACTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATATTTACAAGAAAATTATTAAAATATACCAAACATTGACTAAT  887

seq1  TTTCCTGAAAGCCAAATTCAAATAAACCAATTTCTTTATATTGAAATACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAAAGCCAAATTCAAATAAACCAATTTCTTTATATTGAAATACT  937

seq1  ATACATGTCTGTTAGGTATATAACAGAATGTGCATTTCTTACTAAAATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTCTGTTAGGTATATAACAGAATGTGCATTTCTTACTAAAATAA  987

seq1  ACTATGTAATATTTGATAGGGTTCAAGTGAAACTATGCTTTATATCATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAATATTTGATAGGGTTCAAGTGAAACTATGCTTTATATCATAA  1037

seq1  ATAAATGTTATTTATATGATGAAATGAACAGATAAGCAACAATGACAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTATTTATATGATGAAATGAACAGATAAGCAACAATGACAAAA  1087

seq1  CCTAGAATTC  1107
      ||||||||||
seq2  CCTAGAATTC  1097