BAC Information

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BAC

Clone NameB6Ng01-040P09
Chromosome1 (Build37)
Map Location 24,788,688 - 24,893,319
singlet/doubletdoublet
Overlap geneLmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P09.bB6Ng01-040P09.g
ACCDH867767DH867768
length1,061697
definitionDH867767|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P09, 5' end.DH867768|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,892,243 - 24,893,319)(24,788,688 - 24,789,383)
sequence
gaattctgccaattctcagagtttgagcaccgtgacttctgtcttcatca
agccaattcatataagccactaacataacccaatctcaggaaaaagaaat
tatctggaacctctaaagaaaggtccagagcttgttggacatatcttaca
atcatctacaatatttaatctagattaatcagagaaatttctggcttcac
tgtcaaaccatcaacagattttaattttacctttaaatatcagaatgttt
tatttatttacagcatttcataaaagatagggagaaagtctggcctacct
catcttttcttattgttacctcaactccactgtagtgtacctagaaatgc
tgacctgatcaagggtggaccctgactaacctatgtcaccatgccctgat
ctgcagccgtgatgcactaagctctctcccttcctctgtcacactgacaa
atgcacagtttgtttccaacttcaatggccagcacttctacctggatgac
tgacttccatttccacaggctttggccctcaatgcctgcccatggtgctc
agcaagttgctgtttcctgtctctgtcttcacaacttccttttctcctac
actaataggactgaccattaagggaaagggtctcagcctggcactcctga
catttggtactggatgactctgctgtgaagggccaccctgccctctgtag
catacttagtgatatgcctgtcctctacttgtgagatgctaacatgtctc
agtgaaaagtaagaatgtgattgccaaattgtgtgtgtttgtgtgtatgc
atgtgtgttaaaattgtttcaaatgtgactttcttttctttctttctttt
cttctttctttctttctttcttttttttttatttttttttttttttttga
gacacgtgtctccactaagtagcactggtattcttgagttcattatgata
ttaatctctatcaagcacagtctattacccatccccttccctaatatttt
atccaaatattaaaatcacttacttgtattgatccacatttaatgagtat
tgcttagtcag
gaattcattgaaaacagctggtggacgaaattttgtggtgccctgcgccc
cctgaaggtaaatggagttttataaagtagttcagtcaaatctcttgcaa
ggccttctgtagcacctctcagagaggtgagtctccctgcgcggcagtgc
catgacactctcgagcctgggctttggagctgaagtaacccaggctgcat
cacagctctctggctggtagtctgaacaaggcctgtaacatcagagaccc
acggactcctgtgcagtgagtcattaggaaatgcaaaggggaggaaggga
aagtgacagaagaagccagaacatattctgcaggtctgtgctctggttgt
atgtgggagactggagacgcacatcaggactcaggaacctgcctccaagt
ggcagcttagcttgttagatgagcgtctagaagaccataatgctatgtgt
gtgaactggaaaccattacttgtctatttaagagtctgttgttagccagc
cttctagtcttgccactatggcacttgaattttggtaccagaatttaagt
acctagggcagtgacggcaactcagactataaagtatctgacagtgttag
ctatggaaccagctttacctgttctgcgtttgggaaacttttcggctggc
agatggcaggatgtggtaatactcaagttgtaatttatgctgcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24892243_24893319
seq2: B6Ng01-040P09.b_48_1108 (reverse)

seq1  CTGACTAAGACAATACTCAATTATATGTTGATCAAATACAAAGTAAGTGA  50
      ||||||||| |||||||| |||| |||| |||| ||||| ||||||||| 
seq2  CTGACTAAG-CAATACTC-ATTAAATGTGGATC-AATAC-AAGTAAGTG-  45

seq1  ATTTTAATATTTTTGATAAAATATTTAGTGAGGGGATGGGTATATGACTG  100
      ||||||||| ||| |||||||||||  |  ||||||||||||   |||||
seq2  ATTTTAATA-TTTGGATAAAATATTAGGGAAGGGGATGGGTAATAGACTG  94

seq1  TTGCTTGATA-AGATTAATATCATAATGAACTCCAGGATAGCCAGTGCTA  149
       ||||||||| |||||||||||||||||||||| || ||| |||||||||
seq2  -TGCTTGATAGAGATTAATATCATAATGAACTCAAGAATA-CCAGTGCTA  142

seq1  CTTAGT-GAGACAC-TGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  197
      |||||| ||||||| ||||||||||||||||||||||| |||||||||| 
seq2  CTTAGTGGAGACACGTGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAAA-  191

seq1  AAAAAAAGAAAAGAAAGAAAGAAAGAAGAAAAAGAAAGAAAAGAAAAGAA  247
               ||||||||||||||||||| ||||||||| |||||||||||
seq2  --------GAAAGAAAGAAAGAAAGAAG-AAAAGAAAG-AAAGAAAAGAA  231

seq1  AGTCACATTTGAAACAATTTTAACACACATGCATACACACAAACACACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTTGAAACAATTTTAACACACATGCATACACACAAACACACAC  281

seq1  AATTTGGCAATCACATTCTTACTTTTCACTGAGACATGTTAGCATCTCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCAATCACATTCTTACTTTTCACTGAGACATGTTAGCATCTCAC  331

seq1  AAGTAGAGGACAGGCATATCACTAAGTATGCTACAGAGGGCAGGGTGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGGACAGGCATATCACTAAGTATGCTACAGAGGGCAGGGTGGCC  381

seq1  CTTCACAGCAGAGTCATCCAGTACCAAATGTCAGGAGTGCCAGGCTGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCAGAGTCATCCAGTACCAAATGTCAGGAGTGCCAGGCTGAGA  431

seq1  CCCTTTCCCTTAATGGTCAGTCCTATTAGTGTAGGAGAAAAGGAAGTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCTTAATGGTCAGTCCTATTAGTGTAGGAGAAAAGGAAGTTGT  481

seq1  GAAGACAGAGACAGGAAACAGCAACTTGCTGAGCACCATGGGCAGGCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGACAGGAAACAGCAACTTGCTGAGCACCATGGGCAGGCATT  531

seq1  GAGGGCCAAAGCCTGTGGAAATGGAAGTCAGTCATCCAGGTAGAAGTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCAAAGCCTGTGGAAATGGAAGTCAGTCATCCAGGTAGAAGTGCT  581

seq1  GGCCATTGAAGTTGGAAACAAACTGTGCATTTGTCAGTGTGACAGAGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGAAGTTGGAAACAAACTGTGCATTTGTCAGTGTGACAGAGGAA  631

seq1  GGGAGAGAGCTTAGTGCATCACGGCTGCAGATCAGGGCATGGTGACATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGCTTAGTGCATCACGGCTGCAGATCAGGGCATGGTGACATAG  681

seq1  GTTAGTCAGGGTCCACCCTTGATCAGGTCAGCATTTCTAGGTACACTACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCAGGGTCCACCCTTGATCAGGTCAGCATTTCTAGGTACACTACA  731

seq1  GTGGAGTTGAGGTAACAATAAGAAAAGATGAGGTAGGCCAGACTTTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTGAGGTAACAATAAGAAAAGATGAGGTAGGCCAGACTTTCTCC  781

seq1  CTATCTTTTATGAAATGCTGTAAATAAATAAAACATTCTGATATTTAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTTATGAAATGCTGTAAATAAATAAAACATTCTGATATTTAAAG  831

seq1  GTAAAATTAAAATCTGTTGATGGTTTGACAGTGAAGCCAGAAATTTCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTAAAATCTGTTGATGGTTTGACAGTGAAGCCAGAAATTTCTCT  881

seq1  GATTAATCTAGATTAAATATTGTAGATGATTGTAAGATATGTCCAACAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATCTAGATTAAATATTGTAGATGATTGTAAGATATGTCCAACAAG  931

seq1  CTCTGGACCTTTCTTTAGAGGTTCCAGATAATTTCTTTTTCCTGAGATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACCTTTCTTTAGAGGTTCCAGATAATTTCTTTTTCCTGAGATTG  981

seq1  GGTTATGTTAGTGGCTTATATGAATTGGCTTGATGAAGACAGAAGTCACG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTTAGTGGCTTATATGAATTGGCTTGATGAAGACAGAAGTCACG  1031

seq1  GTGCTCAAACTCTGAGAATTGGCAGAATTC  1077
      ||||||||||||||||||||||||||||||
seq2  GTGCTCAAACTCTGAGAATTGGCAGAATTC  1061

seq1: chr1_24788688_24789383
seq2: B6Ng01-040P09.g_69_765

seq1  GAATTCATTGAAAACAGCTGGTGGACGAAATTTTGTGGTGCCCTGCGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAAACAGCTGGTGGACGAAATTTTGTGGTGCCCTGCGCCC  50

seq1  CCTGAAGGTAAATGGAGTTTTATAAAGTAGTTCAGTCAAATCTCTTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGTAAATGGAGTTTTATAAAGTAGTTCAGTCAAATCTCTTGCAA  100

seq1  GGCCTTCTGTAGCACCTCTCAGAGAGGTGAGTCTCCCTGCGCGGCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTGTAGCACCTCTCAGAGAGGTGAGTCTCCCTGCGCGGCAGTGC  150

seq1  CATGACACTCTCGAGCCTGGGCTTTGGAGCTGAAGTAACCCAGGCTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTCTCGAGCCTGGGCTTTGGAGCTGAAGTAACCCAGGCTGCAT  200

seq1  CACAGCTCTCTGGCTGGTAGTCTGAACAAGGCCTGTAACATCAGAGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTCTGGCTGGTAGTCTGAACAAGGCCTGTAACATCAGAGACCC  250

seq1  ACGGACTCCTGTGCAGTGAGTCATTAGGAAATGCAAAGGGGAGGAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTCCTGTGCAGTGAGTCATTAGGAAATGCAAAGGGGAGGAAGGGA  300

seq1  AAGTGACAGAAGAAGCCAGAACATATTCTGCAGGTCTGTGCTCTGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGAAGAAGCCAGAACATATTCTGCAGGTCTGTGCTCTGGTTGT  350

seq1  ATGTGGGAGACTGGAGACGCACATCAGGACTCAGGAACCTGCCTCCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGACTGGAGACGCACATCAGGACTCAGGAACCTGCCTCCAAGT  400

seq1  GGCAGCTTAGCTTGTTAGATGAGCGTCTAGAAGACCATAATGCTATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTAGCTTGTTAGATGAGCGTCTAGAAGACCATAATGCTATGTGT  450

seq1  GTGAACTGGAAACCATTACTTGTCTATTTAAGAGTCTGTTGTTAGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGGAAACCATTACTTGTCTATTTAAGAGTCTGTTGTTAGCCAGC  500

seq1  CTTCTAGTCTTGCCACTATGGCACTTGAATTTTGGTACCAGAATTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTCTTGCCACTATGGCACTTGAATTTTGGTACCAGAATTTAAGT  550

seq1  ACCTAGGGCAGTGACGGCAACTCAGACTATAAAGTATCTGACAGTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCAGTGACGGCAACTCAGACTATAAAGTATCTGACAGTGTTAG  600

seq1  CTATGGAACCAGCTTTACCTGTTCTGCGTTTGGGAAAC-TTTCGGCTGGC  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTATGGAACCAGCTTTACCTGTTCTGCGTTTGGGAAACTTTTCGGCTGGC  650

seq1  AGATGGCAGGATGTGGTAATACTCAAGTTGTAATTTATGCTGCACAT  696
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGGATGTGGTAATACTCAAGTTGTAATTTATGCTGCACAT  697