BAC Information

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BAC

Clone NameB6Ng01-041A13
Chromosome1 (Build37)
Map Location 157,319,334 - 157,465,218
singlet/doubletdoublet
Overlap geneEG433367, Acbd6
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
Downstream geneLhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A13.bB6Ng01-041A13.g
ACCDH867816DH867817
length1,053821
definitionDH867816|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A13, 5' end.DH867817|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,464,157 - 157,465,218)(157,319,334 - 157,320,152)
sequence
gaattctgagagcatttcagtgagctctcaagccatttatacttttttta
aaaaaggaagctactagaagaagtgacccacaagagtgggaaatgaataa
taaaggaaaaggtatgaaggaaatcaaggaagtaaacaacaaaagagtca
cgggacccagaaaacacgaagccaggcaaagagagaggagaaatttccaa
acagtaaaaaggaaaaggcccatgatgatatccacgcaacaggtcaagac
cagcttgtagggactagcgatgaagcaggaaggggcgccctagaaggtgt
ggatctaagacaaatgagtctgagtgcaccaacaactttcttttgagtaa
caggaggaaagaactcatgataggaacagagaaaacgaagacagacgaaa
aacaaattcagaagtaatcctgacttgagaaacaatgctgttccatggta
agtgggtattactatgcagttagtcattgattctttcttgccttgcttgt
ttgtaatcagaatgaacatcccactaaaaagagtcttgggcttgtgactt
gttttggccaaaggaaggtaggtagatgtgctatacagcacttctagtaa
aacatttatggacttggggtgtgtgaagagggatgcctagctgtgcctat
ctttagttcctataccacagtatctaattcattgatcttttacctttgtg
agaaaagccacatgaaatcaagagaaaactgggcccaaacaaagccagga
gaacctagcaagaagcctcaactaatcccaagcccttctgaaagatcacc
accaaacgggaaacaaagtaaaagaatatcagaatatgtgaaatgttatt
atccatgacaagaaggtaatataagcaagagattataagctcctgaactt
tgggagttgtttattactacagcaaagttgattatatacatagtacagtc
acacaacctacagcagtatttactagtattgtatcttaacacaatttata
ttcaaccagaagctgaatttagaggggtccgaagacggacggcaagatga
tta
gaattcattaacaccgttcctgaaggcagattttgatagtggtctgtggt
gataacacttctactgagaattaaagagagataaggtgagatccagagac
cagaaggctggaaagccaaccatttctcagcaggtttgctttgcctgcgt
gttaagcattcttagacatcccagtctgacattataaaaggtgtgtaatg
ttttcgaacatagagaaagatccttggtgaaaacagccatgcaaactttt
gttaaacacagcctgttactccatcctcctctgcccaggcggccctacat
cttgcccttagctgcagttctaagggaaccaaggaccacaaagaaagtgg
cctaccccaaggggtgagcagcctaaaggatggagtagaggcaccagaca
acgacatcttttctcttggatgtgtgcaacaacatagttacctcggtcct
ataaaatagatgaccccaaacaaagaatggagaagctgcctgatccatat
aaagtaagcattttaaggctctgtcagagcaaggatgcattgctcctgag
taaggacgtgcgtgagtcatagttcaaagaaatgaggcggggcttcctag
aagtccctgaaagtgtaagcaatttcagactccattaactctgcaggcag
cagtttctcccttctcttcctctcttccttccttgagcctttcctccccc
ttgtaggcttcgtttggtttttttgttttgtttttgtttttgtttgtttt
tccttcataagatgcatgctgtcctctaaagcctcattctatgggtatga
aaagattccatccccgaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_157464157_157465218
seq2: B6Ng01-041A13.b_41_1093 (reverse)

seq1  TAATCATCTTGCTGTCTGTCTTTCTGTACCCTCTTAAATTTCAGCTTTCT  50
      |||||||||||| ||| ||| ||| |  ||||||  || |||||| ||||
seq2  TAATCATCTTGCCGTCCGTC-TTCGGACCCCTCT--AAATTCAGC-TTCT  46

seq1  GGTTGAATATTAAATTGGTGTTTATGATACAATACTTAGTAAATACTGCT  100
      ||||||||| |||||| ||| ||| |||||||||| ||||||||||||||
seq2  GGTTGAATA-TAAATT-GTG-TTAAGATACAATAC-TAGTAAATACTGCT  92

seq1  TGTGGTTGTGTGACTGTACTATGTATATTAATCAACTTTTGCTGTAGTAA  150
         |||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTAGGTTGTGTGACTGTACTATGTATA-TAATCAAC-TTTGCTGTAGTAA  140

seq1  TAAACAACTCCCAAAGTTCAGGAGCTTATAATCTCTTGCTTATATTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACTCCCAAAGTTCAGGAGCTTATAATCTCTTGCTTATATTACCT  190

seq1  TCTTGTCATGGATAATAACATTTCACATATTCTGATATTCTTTTACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATGGATAATAACATTTCACATATTCTGATATTCTTTTACTTTG  240

seq1  TTTCCCGTTTGGTGGTGATCTTTCAGAAGGGCTTGGGATTAGTTGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGTTTGGTGGTGATCTTTCAGAAGGGCTTGGGATTAGTTGAGGCT  290

seq1  TCTTGCTAGGTTCTCCTGGCTTTGTTTGGGCCCAG-TTTCTCTTGATTTC  349
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTGCTAGGTTCTCCTGGCTTTGTTTGGGCCCAGTTTTCTCTTGATTTC  340

seq1  ATGTGGCTTTTCTCACAAAGGTAAAAGATCAATGAATTAGATACTGTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTTTCTCACAAAGGTAAAAGATCAATGAATTAGATACTGTGGT  390

seq1  ATAGGAACTAAAGATAGGCACAGCTAGGCATCCCTCTTCACACACCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAACTAAAGATAGGCACAGCTAGGCATCCCTCTTCACACACCCCAA  440

seq1  GTCCATAAATGTTTTACTAGAAGTGCTGTATAGCACATCTACCTACCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAAATGTTTTACTAGAAGTGCTGTATAGCACATCTACCTACCTTC  490

seq1  CTTTGGCCAAAACAAGTCACAAGCCCAAGACTCTTTTTAGTGGGATGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCAAAACAAGTCACAAGCCCAAGACTCTTTTTAGTGGGATGTTC  540

seq1  ATTCTGATTACAAACAAGCAAGGCAAGAAAGAATCAATGACTAACTGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTACAAACAAGCAAGGCAAGAAAGAATCAATGACTAACTGCAT  590

seq1  AGTAATACCCACTTACCATGGAACAGCATTGTTTCTCAAGTCAGGATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACCCACTTACCATGGAACAGCATTGTTTCTCAAGTCAGGATTAC  640

seq1  TTCTGAATTTGTTTTTCGTCTGTCTTCGTTTTCTCTGTTCCTATCATGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTTGTTTTTCGTCTGTCTTCGTTTTCTCTGTTCCTATCATGAG  690

seq1  TTCTTTCCTCCTGTTACTCAAAAGAAAGTTGTTGGTGCACTCAGACTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTCCTGTTACTCAAAAGAAAGTTGTTGGTGCACTCAGACTCAT  740

seq1  TTGTCTTAGATCCACACCTTCTAGGGCGCCCCTTCCTGCTTCATCGCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGATCCACACCTTCTAGGGCGCCCCTTCCTGCTTCATCGCTAG  790

seq1  TCCCTACAAGCTGGTCTTGACCTGTTGCGTGGATATCATCATGGGCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACAAGCTGGTCTTGACCTGTTGCGTGGATATCATCATGGGCCTTT  840

seq1  TCCTTTTTACTGTTTGGAAATTTCTCCTCTCTCTTTGCCTGGCTTCGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTACTGTTTGGAAATTTCTCCTCTCTCTTTGCCTGGCTTCGTGT  890

seq1  TTTCTGGGTCCCGTGACTCTTTTGTTGTTTACTTCCTTGATTTCCTTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTCCCGTGACTCTTTTGTTGTTTACTTCCTTGATTTCCTTCAT  940

seq1  ACCTTTTCCTTTATTATTCATTTCCCACTCTTGTGGGTCACTTCTTCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCTTTATTATTCATTTCCCACTCTTGTGGGTCACTTCTTCTAG  990

seq1  TAGCTTCCTTTTTTAAAAAAAGTATAAATGGCTTGAGAGCTCACTGAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTTTTTTAAAAAAAGTATAAATGGCTTGAGAGCTCACTGAAAT  1040

seq1  GCTCTCAGAATTC  1062
      |||||||||||||
seq2  GCTCTCAGAATTC  1053

seq1: chr1_157319334_157320152
seq2: B6Ng01-041A13.g_69_889

seq1  GAATTCATTAACTCCGTTCCTGAAGGCAGATTTTGATAGTGGTCTGTGGT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACACCGTTCCTGAAGGCAGATTTTGATAGTGGTCTGTGGT  50

seq1  GATAACACTTCTACTGAGAATTAAAGAGAGATAAGGTGAGATCCAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACTTCTACTGAGAATTAAAGAGAGATAAGGTGAGATCCAGAGAC  100

seq1  CAGAAGGCTGGAAAGCCAACCATTTCTCAGCAGGTTTGCTTTGCCTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTGGAAAGCCAACCATTTCTCAGCAGGTTTGCTTTGCCTGCGT  150

seq1  GTTAAGCATTCTTAGACATCCCAGTCTGACATTATAAAAGGTGTGTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCATTCTTAGACATCCCAGTCTGACATTATAAAAGGTGTGTAATG  200

seq1  TTTTCGAACATAGAGAAAGATCCTTGGTGAAAACAGCCATGCAAACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAACATAGAGAAAGATCCTTGGTGAAAACAGCCATGCAAACTTTT  250

seq1  GTTAAACACAGCCTGTTACTCCATCCTCCTCTGCCCAGGCGGCCCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACAGCCTGTTACTCCATCCTCCTCTGCCCAGGCGGCCCTACAT  300

seq1  CTTGCCCTTAGCTGCAGTTCTAAGGGAACCAAGGACCACAAAGAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTTAGCTGCAGTTCTAAGGGAACCAAGGACCACAAAGAAAGTGG  350

seq1  CCTACCCCAAGGGGTGAGCAGCCTAAAGGATGGAGTAGAGGCACCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCAAGGGGTGAGCAGCCTAAAGGATGGAGTAGAGGCACCAGACA  400

seq1  ACGACATCTTTTCTCTTGGATGTGTGCAACAACATAGTTACCTCGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATCTTTTCTCTTGGATGTGTGCAACAACATAGTTACCTCGGTCCT  450

seq1  ATAAAATAGATGACCCCAAACAAAGAATGGAGAAGCTGCCTGATCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGATGACCCCAAACAAAGAATGGAGAAGCTGCCTGATCCATAT  500

seq1  AAAGTAAGCATTTTAAGGCTCTGTCAGAGCAAGGATGCATTGCTCCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGCATTTTAAGGCTCTGTCAGAGCAAGGATGCATTGCTCCTGAG  550

seq1  TAAGGACGTGCGTGAGTCATAGTTCAAAGAAATGAGGCGGGGCTTCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACGTGCGTGAGTCATAGTTCAAAGAAATGAGGCGGGGCTTCCTAG  600

seq1  AAGTCCCTGAAAGTGTAAGCAATTTCAGACTCCATTAACTCTGCAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGAAAGTGTAAGCAATTTCAGACTCCATTAACTCTGCAGGCAG  650

seq1  CAGTTTCTCCCTTCTCTTCCTCTCTTCCTTCCTTGAGCCTTTCCTCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCCCTTCTCTTCCTCTCTTCCTTCCTTGAGCCTTTCCTCCCCC  700

seq1  TTGTAGGCTTCGTTTGG-TTTTTTGTTTTG-TTTTGTTTTTGTTTGTTTT  748
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTGTAGGCTTCGTTTGGTTTTTTTGTTTTGTTTTTGTTTTTGTTTGTTTT  750

seq1  TCCTTCATAAGATGCATGCTGTCCTCTAAAGCCTCATTCTATGGGTATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATAAGATGCATGCTGTCCTCTAAAGCCTCATTCTATGGGTATGA  800

seq1  AAAGATTCCATCCCCGAGGCC  819
      |||||||||||||||||||||
seq2  AAAGATTCCATCCCCGAGGCC  821