BAC Information

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BAC

Clone NameB6Ng01-041C20
Chromosome1 (Build37)Y (Build37)
Map Location 6,463,570 - 6,464,722573,321 - 573,515
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C20.bB6Ng01-041C20.g
ACCDH867914DH867915
length1,151494
definitionDH867914|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C20, 5' end.DH867915|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,463,570 - 6,464,722)(573,321 - 573,515)
sequence
gaattcagtcctcagccacatacttggaataagttagacatttatgctat
tgctattttgtcatttataaaatacaacaacaacaatgcctattttaaat
gatttagtatgcgtaaggaacctggaaccacagccagcctggaagaaggg
gtaatatatacttttataagaaggattatgagtataacaaaaattatcct
aacatctttgtattgcttcaactgaataaagacactgctcatctcttatg
aaatactggaaaaaacacccaaagtgcttctatattttatattatataca
ttatgtactcatttaattattaatgcaaaactttcttttgccatatccct
gtcttctacacactcatagtctaaaaaagaattgacaaaatatcaagtaa
tggcagtagaataaatttgatgaggagtttcagggctgaaaataaagcaa
aaattgtttcaggcttcataagagacaggaaagatgagcttattgcaatc
aaatattgcctctgattgggcaggagatgcatggcccaaatgagggtgtc
atccttcaccattacagttatgagtatcactatacagtttgctgataaga
gactctctccatgaggggacaagccagatcccagaaaaagtcataggctg
gtgaagggctttggatttcctctaatcctctagaaactcttaggtagaat
ttgaaactgcaacatgaggaacacagaggatcatatgatccaattttctt
tctcaaggcctcacaaataaacatactgtaggaagatgacagaaagagaa
gcttgtggtagtcactcatatcctaacaacctccattagcatctcacaga
gtataccaaaagcctacaactttcagcatcactcaggcccactaccaagg
tcagcttgagagacattatccagaacagttacctcagagtcttttgagtg
aaatcctatagttacaaacagcttcctcatgagcatgattcaagacatgg
tggtgagaacctttgaccacgagccagagcaggagacatctttaaaccat
ctgcagaatttctgaggcttggttttgttggctattgagtggctgttgta
agcttggctatgcgtctgacgactaatttcttttgttttatttagaacct
g

tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtctaccttcttgagttctttatatatattggattagtcccctatctga
tttagcattggtaaagatcctttcccaatctgttggtgtcccataatcag
cctccaaacactaacaccattgcatacaccagcaagattttgctgaaagg
accctgatatagctgtctcttgtgaggctatgccggggcctggcaaacac
agaagtggatgctcacagtcagttattggatggaacacaggacccccaat
ggaggagctagagaaaatagccaaggagctaaagggttctgcaaccctat
aggtggaacaacaatatgaactaaccagtacccccagagctcgtgtctct
agctgcatatgtatcagaagatggcctagtcagccatcattgggaagaaa
ggccccttggtcttgcaaacgttgtatgcctcagtacaggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6463570_6464722
seq2: B6Ng01-041C20.b_44_1194 (reverse)

seq1  CAGGTTGCTTAAATAAAACAAAAG-AATTAGTCCGTCAGACGGCTAGCCA  49
      ||||||   ||||||||||||||| ||||||| |||||||||  ||||||
seq2  CAGGTT--CTAAATAAAACAAAAGAAATTAGT-CGTCAGACGCATAGCCA  47

seq1  AGCTATCAACAGCCAACTCACAAACCAACAAAA-CAAGCCTCAAATATTC  98
      ||||  |||||||| |||||  | ||||||||| ||||||||| | ||||
seq2  AGCTTACAACAGCC-ACTCAATAGCCAACAAAACCAAGCCTCAGAAATTC  96

seq1  TGCAGATGGTTTAAAGATGTCTCCTGCTCTGGCTCGTGGTCAGAGGTTCT  148
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCAGATGGTTTAAAGATGTCTCCTGCTCTGGCTCGTGGTCAAAGGTTCT  146

seq1  CA-CACCATGTCTTGAATCATGCTCATGAGGAAGCTGTTTGTAACTATAG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATGTCTTGAATCATGCTCATGAGGAAGCTGTTTGTAACTATAG  196

seq1  GATTTCACCTTCAAAAGACTCTGAGGTAACTGTTCTGGATAATGTCTCTC  247
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAC--TCAAAAGACTCTGAGGTAACTGTTCTGGATAATGTCTCTC  244

seq1  AAGCTGACCTTGGTAGTGGGCCTGAGTGATGCTG-AAGTTGTAGGCTTTT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGCTGACCTTGGTAGTGGGCCTGAGTGATGCTGAAAGTTGTAGGCTTTT  294

seq1  GGTATACTCTGTGAGATGCTAATGGAGGTTGTTAGGATATGAGTGACTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACTCTGTGAGATGCTAATGGAGGTTGTTAGGATATGAGTGACTAC  344

seq1  CACAAGCTTCTCTTTCTGTCATCTTCCTACAGTATGTTTATTTGTGAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTCTCTTTCTGTCATCTTCCTACAGTATGTTTATTTGTGAGGC  394

seq1  CTTGAGAAAGAAAATTGGATCATATGATCCTCTGTGTTCCTCATGTTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAGAAAATTGGATCATATGATCCTCTGTGTTCCTCATGTTGCA  444

seq1  GTTTCAAATTCTACCTAAGAGTTTCTAGAGGATTAGAGGAAATCCAAAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATTCTACCTAAGAGTTTCTAGAGGATTAGAGGAAATCCAAAGC  494

seq1  CCTTCACCAGCCTATGACTTTTTCTGGGATCTGGCTTGTCCCCTCATGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCAGCCTATGACTTTTTCTGGGATCTGGCTTGTCCCCTCATGGA  544

seq1  GAGAGTCTCTTATCAGCAAACTGTATAGTGATACTCATAACTGTAATGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTCTTATCAGCAAACTGTATAGTGATACTCATAACTGTAATGGT  594

seq1  GAAGGATGACACCCTCATTTGGGCCATGCATCTCCTGCCCAATCAGAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGACACCCTCATTTGGGCCATGCATCTCCTGCCCAATCAGAGGC  644

seq1  AATATTTGATTGCAATAAGCTCATCTTTCCTGTCTCTTATGAAGCCTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGATTGCAATAAGCTCATCTTTCCTGTCTCTTATGAAGCCTGAA  694

seq1  ACAATTTTTGCTTTATTTTCAGCCCTGAAACTCCTCATCAAATTTATTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTGCTTTATTTTCAGCCCTGAAACTCCTCATCAAATTTATTCT  744

seq1  ACTGCCATTACTTGATATTTTGTCAATTCTTTTTTAGACTATGAGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATTACTTGATATTTTGTCAATTCTTTTTTAGACTATGAGTGTGT  794

seq1  AGAAGACAGGGATATGGCAAAAGAAAGTTTTGCATTAATAATTAAATGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGGGATATGGCAAAAGAAAGTTTTGCATTAATAATTAAATGAG  844

seq1  TACATAATGTATATAATATAAAATATAGAAGCACTTTGGGTGTTTTTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGTATATAATATAAAATATAGAAGCACTTTGGGTGTTTTTTCC  894

seq1  AGTATTTCATAAGAGATGAGCAGTGTCTTTATTCAGTTGAAGCAATACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCATAAGAGATGAGCAGTGTCTTTATTCAGTTGAAGCAATACAA  944

seq1  AGATGTTAGGATAATTTTTGTTATACTCATAATCCTTCTTATAAAAGTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAGGATAATTTTTGTTATACTCATAATCCTTCTTATAAAAGTAT  994

seq1  ATATTACCCCTTCTTCCAGGCTGGCTGTGGTTCCAGGTTCCTTACGCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCCCTTCTTCCAGGCTGGCTGTGGTTCCAGGTTCCTTACGCATA  1044

seq1  CTAAATCATTTAAAATAGGCATTGTTGTTGTTGTATTTTATAAATGACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCATTTAAAATAGGCATTGTTGTTGTTGTATTTTATAAATGACAA  1094

seq1  AATAGCAATAGCATAAATGTCTAACTTATTCCAAGTATGTGGCTGAGGAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATAGCATAAATGTCTAACTTATTCCAAGTATGTGGCTGAGGAC  1144

seq1  TGAATTC  1153
      |||||||
seq2  TGAATTC  1151


seq1: chrY_573321_573515
seq2: B6Ng01-041C20.g_371_566

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||| || |||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAATAGCCAAGGAGCTAAAGGGTTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| ||||||||||||||||| ||||||||| || |||||||| |||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CTAGCTGCATATGTATCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAA  195
       ||||||||||||||||||||| || |||||| |||||||||||||
seq2  AAGGCCCCTTGGTCTTGCAAACGTTGTATGCCTCAGTACAGGGGAA  196


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