BAC Information

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BAC

Clone NameB6Ng01-041D06
Chromosome1 (Build37)
Map Location 99,109,084 - 99,110,110
singlet/doubletsinglet
Overlap geneEG634331
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1
Downstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D06.bB6Ng01-041D06.g
ACCDH867932DH867933
length1,0871,024
definitionDH867932|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D06, 5' end.DH867933|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgtcatacatcaatatgtcaaagacatgaaaagattttccgaa
gaaataaaaatcgataaaatcaaaatactataactactcagaaacaataa
gatcaaatgtcatcctacaggttacattcaaccaagtctatggaaatcat
actataatctattggacatagcactcccggaggatctagcaatacctctc
ctgggcatatatccagaagatgttccaactggtaagaaggacacatgttc
cactatgttcatagtaaccttatttataatagccagaagctggaaaaaac
ccagatgtcgctcaacagaggaatggatacagaaagtgtatccatttaca
caatggagtactactcagctattaaaaagaatgaatttatgaaattccta
ggcaaatggatgggcctggagggcatcatcctgagtgaggtaacccaatc
acaaaagaacacacatgatatgaactcactgataagtggatattatccca
gaaacttggaatacccaagatacaagatacaatgtgcaaaacacatgaaa
ctcaagaagaatgaagaccaaaatatgatcactttgcaccttcttagaat
tgggaacaaaacacccatggaaggagttacagagacaaagtttggagctg
agacgaaaggatggaccatctagagactgccatacccggggatccatccc
ataatcagcctccaaacgatgacaccattgcatacactagcaagattttg
ctgaaaggacccagatagagctgtcccttgtgagactaggccggggccta
gcaaacacagaagtggatgctcacagtcagctattggatggatcacaggg
cccccaatggaggagctagagaaagtacacaaggagctaaaggagtctgc
aaccttataggaggaagacaatatgaactaaccagtactccagagctcat
gtctctagctgcatatatatcagaagatggcctagtcgccatcatgggaa
agagaggccattggtcttgcaacttttattgcctcagtacagggaacacc
atgctgaaaatgtgaatgggtggggtaagggaatgct
gaattcaaatgagtccaacaggaaaactggaaagaatgcagaagtagcca
atacacttagcacaaggggcctgaagggagggcttgctggtgtcctgtgt
cctcaagggtcagatgccatcaacaagaaaagcagtgcaacctaaggagc
aaggtttcttgctatagaggtccaggtgaaaaattaaagaagccagaaaa
agaaacaagtcttggttttccagaggcacagattaaagagagaaagtttt
ataactaggaacaagcaggaccttttgctgcctgagtcatgacactgaaa
cgggaagtgggtaaatgaggctatgatgggagaaaaaacaaaacagtgac
agtgaatgctgacaactggctcttgtcagcaaagccccaaattcatagtg
acaaattacaagtaaatatagataaacagaaaattctagcaacaaattat
gattttttttaagttaaagcttctaactgaaattttctctatttctttgt
acaagtggacatgttcaaaggtttcgaatattacagagtggttggtggaa
atcttttatttttgttggttcactctcactttgtacaactttaccactgt
tgtgttttccatctaatttacccggtgagtataaaatatatatataatta
gtcacagtatttttttaccctttgctcccattctcaaagcacagataaac
taatttcaaaatgagtataagcatactccccttggcattgctctttgacc
aaggaatattattgtttttgttgtttttgtttttatcaaatcaagcagga
tcacatccaaatattatatttatgagctatatttttatgtgtatttattt
ttgttattcattatttctttatgttatcctcttatttgaagttcatagat
gtttttaaatatgggagtattgcttaatctatttagccattgttagtcat
tttctctattgtaatagaactattgaatgaaacagcctctctcctctctc
tctctctctcctatatgatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99109084_99110110
seq2: B6Ng01-041D06.g_69_1092

seq1  GAATTCAAATGAGTCCAACAGGAAAACTGGAAAGAATGCAGAAGTAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAGTCCAACAGGAAAACTGGAAAGAATGCAGAAGTAGCCA  50

seq1  ATACACTTAGCACAAGGGGCCTGAAGGGAGGGCTTGCTGGTGTCCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTAGCACAAGGGGCCTGAAGGGAGGGCTTGCTGGTGTCCTGTGT  100

seq1  CCTCAAGGGTCAGATGCCATCAACAAGAAAAGCAGTGCAACCTAAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGGTCAGATGCCATCAACAAGAAAAGCAGTGCAACCTAAGGAGC  150

seq1  AAGGTTTCTTGCTATAGAGGTCCAGGTGAAAAATTAAAGAAGCCAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTTGCTATAGAGGTCCAGGTGAAAAATTAAAGAAGCCAGAAAA  200

seq1  AGAAACAAGTCTTGGTTTTCCAGAGGCACAGATTAAAGAGAGAAAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGTCTTGGTTTTCCAGAGGCACAGATTAAAGAGAGAAAGTTTT  250

seq1  ATAACTAGGAACAAGCAGGACCTTTTGCTGCCTGAGTCATGACACTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGGAACAAGCAGGACCTTTTGCTGCCTGAGTCATGACACTGAAA  300

seq1  CGGGAAGTGGGTAAATGAGGCTATGATGGGAGAAAAAACAAAACAGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGTGGGTAAATGAGGCTATGATGGGAGAAAAAACAAAACAGTGAC  350

seq1  AGTGAATGCTGACAACTGGCTCTTGTCAGCAAAGCCCCAAATTCATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGCTGACAACTGGCTCTTGTCAGCAAAGCCCCAAATTCATAGTG  400

seq1  ACAAATTACAAGTAAATATAGATAAACAGAAAATTCTAGCAACAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTACAAGTAAATATAGATAAACAGAAAATTCTAGCAACAAATTAT  450

seq1  GATTTTTTTTAAGTTAAAGCTTCTAACTGAAATTTTCTCTATTTCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTAAGTTAAAGCTTCTAACTGAAATTTTCTCTATTTCTTTGT  500

seq1  ACAAGTGGACATGTTCAAAGGTTTCGAATATTACAGAGTGGTTGGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGACATGTTCAAAGGTTTCGAATATTACAGAGTGGTTGGTGGAA  550

seq1  ATCTTTTATTTTTGTTGGTTCACTCTCACTTTGTACAACTTTACCACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTTTTGTTGGTTCACTCTCACTTTGTACAACTTTACCACTGT  600

seq1  TGTGTTTTCCATCTAATTTACCCGGTGAGTATAAAATATATATATAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCCATCTAATTTACCCGGTGAGTATAAAATATATATATAATTA  650

seq1  GTCACAGTATTTTTTTACCCTTTGCTCCCATTCTCAAAGCACAGATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTATTTTTTTACCCTTTGCTCCCATTCTCAAAGCACAGATAAAC  700

seq1  TAATTTCAAAATGAGTATAAGCATACTCCCCTTGGCATTGCTCTTTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAAATGAGTATAAGCATACTCCCCTTGGCATTGCTCTTTGACC  750

seq1  AAGGAATATTATTG-TTTTGTTGTTTTTGTTTTTATCAAATCAAGCAGGA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGAATATTATTGTTTTTGTTGTTTTTGTTTTTATCAAATCAAGCAGGA  800

seq1  TCACATCCAAATATTATATTTATGAGCTATATTTTTATGTGTATTTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCAAATATTATATTTATGAGCTATATTTTTATGTGTATTTATTT  850

seq1  TTGTTATTCATTATTTCTTTATGTTATCCTCTTATTTGAAGTTCATAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTCATTATTTCTTTATGTTATCCTCTTATTTGAAGTTCATAGAT  900

seq1  GCTTTTAAATATGGGAGTA-TGCTTAAATCTATTTAGCCATTGTTAGTCA  948
      | ||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GTTTTTAAATATGGGAGTATTGCTT-AATCTATTTAGCCATTGTTAGTCA  949

seq1  CTTTCTCTATTGTAATAGAACTTATTGAATGAATCAGTCTCTCTCTCTCT  998
       |||||||||||||||||||| ||||||||||| ||| |||||||   ||
seq2  TTTTCTCTATTGTAATAGAAC-TATTGAATGAAACAGCCTCTCTC---CT  995

seq1  CTCTCTCTCTCTCTCTCTATAT-ATATATA  1027
      ||||||||||||||| |||||| |||||||
seq2  CTCTCTCTCTCTCTC-CTATATGATATATA  1024