BAC Information

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BAC

Clone NameB6Ng01-041H16
Chromosome1 (Build37)
Map Location 100,148,705 - 100,291,496
singlet/doubletdoublet
Overlap geneLOC666153, LOC100040887
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041H16.bB6Ng01-041H16.g
ACCDH868132DH868133
length1,0851,059
definitionDH868132|Mus musculus domesticus DNA, BAC clone: B6Ng01-041H16, 5' end.DH868133|Mus musculus domesticus DNA, BAC clone: B6Ng01-041H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,148,705 - 100,149,797)(100,290,429 - 100,291,496)
sequence
ggaattcttttaatgtcctactatgtaaaagagacttaataaatgataaa
gtcatcttagaaacatttgagaatatgttaaaaatcatgcataagtgatc
agcaaactagcagggtgctaagtctggagtcagaaaaagccaaattcaat
tttgtgaccaacaaattttatcatgaggactagagaaaccattcagtggt
taagattccaaacccacgtttggttcataagctatgtccatgggtggctc
acatctataactcctgtgactccaggggacctggtaccttctttttgcct
ctttaggcaaattcatttaaaacgctcaaatcatcttttacatacatgtc
attagaaataaaaaataatctttaacaaaaattatatactttttattttt
tattaggtattttcttcatttacatttccaatgctatcccaaaagttccc
tatactctccctcctattcccatacccacccactcccacttcttggccct
ggcatttccctgtactgaggtatataaagtttgcaagtccaatgggcctc
tcttccactgatggccaactaggccatcttctgctgcatatgcagctaga
gacatgagctttggggggtactggttagttcatattgttgttccacctat
agggttgcagattcctttagctcgttgggtaatttctctagctcctccat
tgggggccctgtgatccatccaatagctaactgtgagcatccacttctgt
gtttgctagtccccagcgtagccctcacaagagacagcaatattagacca
cttaccatcataaaaattttatattttgaagtaaagtgaaatcagctgaa
caggaaaaagcaagtctgctggctttggacccactacagcacaatagtaa
cagtggattctgtggaatgcctgtgttttactgaggtcactttctagcta
ggagtctttggaagaattcacctcagcacattctgtctttattatccatg
taaatgcatagcaggcgagtacctattcagaagtgttttcccaatataaa
aaatgatacctatatcatatattagttttcttgaa
gaattccagtcctgatttccttggtgatgaacagcagtatggaagtgtaa
gatgaataaaccctttcctccccaatttgcttcatggccacgatgttttt
tccaggaatagaaaccctgactaagacagatggtcttctggctcagtgaa
ctgcctgctttcctgaacagatttgtcagaccagaactttcctgatagaa
tacccatgcttaagcaaaggggctgggcaatgttttaagaatcaacgaaa
aaggatggtgatcttatgccaaatataaaagaaatacagagaaaggaaag
gaagaattaagtcagagttggagattgaacttttgtagaaagccaagttt
gatataatagatagtaggaaataccctttgttctattaattttatgccac
actgaaacaaaaccaaattcaaatagagacatcctgtctagcatttctgt
aaccacaaggctttactataccaatcctaaggaagaagatactgagttta
aagaaaatttattttatcgtaatgttaacttttagttcttatgagattgc
tgtttgcttactttgtttttctttcaatattcttattaatcaaggaaaat
tttgaaaagctgtgtagtcaatgaataaaatttcttagaaagtgttttta
agtataaataaagcctgaaagagacaaaagttttcagagtgggaaaagcc
atactgagatgtgcctcctctttgtcttggctctcgtggagtgaatgagc
tcccatgtctgatccatccttcccgttactgtcttgcatccacccttctc
cagaaccgtccctcagctgggctgttccctagagctgtgtataaagcaag
tagaacacctgcttgaggccatgctcccattaacctatgtcacttaacaa
ggcctcacaatgtagactttcttccagttccttgtatggccaccaattgt
cacaagcctttaacatatagtacacatttagatagaaccttaacttatac
tgacctatacctaaaggaaaaaaagttataacagcaagagtctagaatgg
tatctgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100148705_100149797
seq2: B6Ng01-041H16.b_40_1124

seq1  GGAATTCTTTTAATGTCCTACTATGTAAAAGAGACTTAATAAATGATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTTTAATGTCCTACTATGTAAAAGAGACTTAATAAATGATAAA  50

seq1  GTCATCTTAGAAACATTTGAGAATATGTTAAAAATCATGCATAAGTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTAGAAACATTTGAGAATATGTTAAAAATCATGCATAAGTGATC  100

seq1  AGCAAACTAGCAGGGTGCTAAGTCTGGAGTCAGAAAAAGCCAAATTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGCAGGGTGCTAAGTCTGGAGTCAGAAAAAGCCAAATTCAAT  150

seq1  TTTGTGACCAACAAATTTTATCATGAGGACTAGAGAAACCATTCAGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACCAACAAATTTTATCATGAGGACTAGAGAAACCATTCAGTGGT  200

seq1  TAAGATTCCAAACCCACGTTTGGTTCATAAGCTATGTCCATGGGTGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCCAAACCCACGTTTGGTTCATAAGCTATGTCCATGGGTGGCTC  250

seq1  ACATCTATAACTCCTGTGACTCCAGGGGACCTGGTACCTTCTTTTTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATAACTCCTGTGACTCCAGGGGACCTGGTACCTTCTTTTTGCCT  300

seq1  CTTTAGGCAAATTCATTTAAAACGCTCAAATCATCTTTTACATACATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCAAATTCATTTAAAACGCTCAAATCATCTTTTACATACATGTC  350

seq1  ATTAGAAATAAAAAATAATCTTTAACAAAAATTATATACTTTTTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATAAAAAATAATCTTTAACAAAAATTATATACTTTTTATTTTT  400

seq1  TATTAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAGTTCCC  450

seq1  TATACTCTCCCTCCTATTCCCATACCCACCCACTCCCACTTCTTGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTCCCTCCTATTCCCATACCCACCCACTCCCACTTCTTGGCCCT  500

seq1  GGCATTTCCCTGTACTGAGGTATATAAAGTTTGCAAGTCCAATGGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCCCTGTACTGAGGTATATAAAGTTTGCAAGTCCAATGGGCCTC  550

seq1  TCTTCCACTGATGGCCAACTAGGCCATCTTCTGCTGCATATGCAGCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTGATGGCCAACTAGGCCATCTTCTGCTGCATATGCAGCTAGA  600

seq1  GACATGAGCTTTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGCTTTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTAT  650

seq1  AGGGTTGCAGATTCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCAT  700
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGGTTGCAGATTCCTTTAGCTCGTTGGGTAATTTCTCTAGCTCCTCCAT  700

seq1  TGGGGGCCCTGTGATCCATCCAATAGCTAACTGTGAGCATCCACTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCCCTGTGATCCATCCAATAGCTAACTGTGAGCATCCACTTCTGT  750

seq1  GTTTGCTAGTCCCCAGCGTAG-CCTCACAAGAGACAGCAATATTAGACCA  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTGCTAGTCCCCAGCGTAGCCCTCACAAGAGACAGCAATATTAGACCA  800

seq1  CTTACCATCATAAAAATTTTATATTTTGAAGTAAAGTGAAATCAGCTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATCATAAAAATTTTATATTTTGAAGTAAAGTGAAATCAGCTGAA  850

seq1  CAGGAAAAAGCAAGTCTGCTGGCTTTGGACCCACTACAGCACAATAGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGGAAAAAGCAAGTCTGCTGGCTTTGGACCCACTACAGCACAATAG-TA  899

seq1  ACAGTGGATTCTGTGGAATGCCTGTGTTTTTACTGAGGTCACTTTCTAGC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGTGGATTCTGTGGAATGCCTGTG-TTTTACTGAGGTCACTTTCTAGC  948

seq1  TAGGAGTCTTTGGAAGAATTCACCTCAGCACATTCTGTCTTTATATATCC  999
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TAGGAGTCTTTGGAAGAATTCACCTCAGCACATTCTGTCTTTAT-TAT-C  996

seq1  CATGTAAAATGCATAGCAGGCGAGTACCTATTCTAGAGTGTTTTCACAAA  1049
      ||||| |||||||||||||||||||||||||||   ||||||||| | ||
seq2  CATGT-AAATGCATAGCAGGCGAGTACCTATTCAGAAGTGTTTTC-CCAA  1044

seq1  TATTAAAAAATGATACCTATATTCATATATATAGTTTTCTTGAA  1093
      || |||||||||||||||||| |||||||| |||||||||||||
seq2  TA-TAAAAAATGATACCTATA-TCATATAT-TAGTTTTCTTGAA  1085

seq1: chr1_100290429_100291496
seq2: B6Ng01-041H16.g_70_1128 (reverse)

seq1  TTGCAGATACCATTTCTAGACTCTTTTGCTGTTTTTACTTTTTTTTCCCT  50
      |||||||||||| ||||||||||  |||||||| | |||||||||  |||
seq2  TTGCAGATACCA-TTCTAGACTC--TTGCTGTTATAACTTTTTTT--CCT  45

seq1  TTA-GTATAAGTTTAGTATAAGTTATGGTTTCTATCTTAAATGTGTACTA  99
      ||| |||| || | ||||||||||| || ||||||| |||||||||||||
seq2  TTAGGTAT-AGGTCAGTATAAGTTAAGG-TTCTATC-TAAATGTGTACTA  92

seq1  TATGTTAAAGGCTTGGTGACAATTGGTGGCATTACAAGGAACTGGAAGAA  149
      |||||||||||||| |||||||||||||||  ||||||||||||||||||
seq2  TATGTTAAAGGCTT-GTGACAATTGGTGGCCATACAAGGAACTGGAAGAA  141

seq1  AGTCTACATTGTGAGGCCTTGTTAGGTGACATAGGTTAATGGGAGCATGG  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCTACATTGTGAGGCCTTGTTAAGTGACATAGGTTAATGGGAGCATGG  191

seq1  CCTCAAGCAGGTGTTCTACTTGCTTTATACACAGCTCTAGGGAACAGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCAAGCAGGTGTTCTACTTGCTTTATACACAGCTCTAGGGAACAGCC-  240

seq1  CAGCTGAGGGACGGTTCTGGAGAAGGGTGGATGCAAGACAGTAACGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGGACGGTTCTGGAGAAGGGTGGATGCAAGACAGTAACGGGAA  290

seq1  GGATGGATCAGACATGGGAGCTCATTCACTCCACGAGAGCCAAGACAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATCAGACATGGGAGCTCATTCACTCCACGAGAGCCAAGACAAAG  340

seq1  AGGAGGCACATCTCAGTATGGCTTTTCCCACTCTGAAAACTTTTGTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCACATCTCAGTATGGCTTTTCCCACTCTGAAAACTTTTGTCTCT  390

seq1  TTCAGGCTTTATTTATACTTAAAAACACTTTCTAAGAAATTTTATTCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTATTTATACTTAAAAACACTTTCTAAGAAATTTTATTCATT  440

seq1  GACTACACAGCTTTTCAAAATTTTCCTTGATTAATAAGAATATTGAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAGCTTTTCAAAATTTTCCTTGATTAATAAGAATATTGAAAGA  490

seq1  AAAACAAAGTAAGCAAACAGCAATCTCATAAGAACTAAAAGTTAACATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTAAGCAAACAGCAATCTCATAAGAACTAAAAGTTAACATTA  540

seq1  CGATAAAATAAATTTTCTTTAAACTCAGTATCTTCTTCCTTAGGATTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAATAAATTTTCTTTAAACTCAGTATCTTCTTCCTTAGGATTGGT  590

seq1  ATAGTAAAGCCTTGTGGTTACAGAAATGCTAGACAGGATGTCTCTATTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAGCCTTGTGGTTACAGAAATGCTAGACAGGATGTCTCTATTTG  640

seq1  AATTTGGTTTTGTTTCAGTGTGGCATAAAATTAATAGAACAAAGGGTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTTTGTTTCAGTGTGGCATAAAATTAATAGAACAAAGGGTATT  690

seq1  TCCTACTATCTATTATATCAAACTTGGCTTTCTACAAAAGTTCAATCTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTATCTATTATATCAAACTTGGCTTTCTACAAAAGTTCAATCTCC  740

seq1  AACTCTGACTTAATTCTTCCTTTCCTTTCTCTGTATTTCTTTTATATTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGACTTAATTCTTCCTTTCCTTTCTCTGTATTTCTTTTATATTTG  790

seq1  GCATAAGATCACCATCCTTTTTCGTTGATTCTTAAAACATTGCCCAGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGATCACCATCCTTTTTCGTTGATTCTTAAAACATTGCCCAGCCC  840

seq1  CTTTGCTTAAGCATGGGTATTCTATCAGGAAAGTTCTGGTCTGACAAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTAAGCATGGGTATTCTATCAGGAAAGTTCTGGTCTGACAAATC  890

seq1  TGTTCAGGAAAGCAGGCAGTTCACTGAGCCAGAAGACCATCTGTCTTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAAAGCAGGCAGTTCACTGAGCCAGAAGACCATCTGTCTTAGT  940

seq1  CAGGGTTTCTATTCCTGGAAAAAACATCGTGGCCATGAAGCAAATTGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTATTCCTGGAAAAAACATCGTGGCCATGAAGCAAATTGGGG  990

seq1  AGGAAAGGGTTTATTCATCTTACACTTCCATACTGCTGTTCATCACCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGTTTATTCATCTTACACTTCCATACTGCTGTTCATCACCAAG  1040

seq1  GAAATCAGGACTGGAATTC  1068
      |||||||||||||||||||
seq2  GAAATCAGGACTGGAATTC  1059