BAC Information

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BAC

Clone NameB6Ng01-041H22
Chromosome1 (Build37)
Map Location 118,188,650 - 118,189,661
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041H22.bB6Ng01-041H22.g
ACCDH868144DH868145
length6631,022
definitionDH868144|Mus musculus domesticus DNA, BAC clone: B6Ng01-041H22, 5' end.DH868145|Mus musculus domesticus DNA, BAC clone: B6Ng01-041H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctacttagatctgtcccctattttttaatagggttatttggtt
ctctgggtctaagttcttgagttctttatatatattcgatattaatccta
tatcagatgtagatctgatagaggtaaagatcttttcccaatctattgat
tgccattatgtcctactgacagtgtactttgccttacagatgctttctaa
ttttatgatttgttgattgttgatcttagaacataagccattggtgttct
gttcaggaagatttcccctgtgccccatgtgttcaaggctcttcccactt
tctcttctattagttttagtgtatctggttttacgtggagggcattgatc
cacttggacttgagctttgcacaaggagataagagtggataaatgtgcat
tcttctacgtagtgactgccagcaccatctgttggaaatgctgtcttttt
tcctctggatggttttagttcctttgttagcccaaaagctcagaataccc
aagataaaattcaaaaatcatatgaagctcaagaagaaggaagaccaaaa
tgtggctgcttcagtccttcttagaagaaggaataaaatactcaggggag
ctagagggtaggaatgacttgggaggaagagcggagtgggagagagagat
gggggcaggatca

gaattctttttttttaagctgtgtaccccattttttaaatagtatttaat
ttggttctcttgtgtctaatgtcttgagttctttatatattttggatatt
agccctctatcagaagtactgttgataaagtttttttccccaattgctgt
gataaaacaccaccacccaccactgaatgaaatgtaagaagaaaagctta
taatttgcaactgacactccattattgagagaagtcaggccatggacctg
gaatcaggaaacaaagcaaagaacatagaggaacactgctttttagcttg
ttccttcatttttttcccaggtatattttcatgttttttttcttatatac
ttcaggacaacctatccaatagtacaacatataattgactgggcttctca
tatcagtcattaagaaaattaccatttgtaaacatatctttaattgaggt
tgccacttctccaatgattctagcttctgtcagaaaaaaaaaaaaaaaaa
aaaaaacagacagaatattggtatgtttcatcaaaccatgaagaaagata
ggaccttacctggtgtgttaagcagacgggatctcctacagtggtatatc
acctcctgttcacagtattctgagccatcaatcaaagcttccagctgctc
catactgccaccatagtttaaggtcatggagtagggattctcaggactgg
aaccctgtacccgagtcagctctgtgttgttgtgctgaactgtcatccat
atcttgtcctctacacagacaacaatccaaaacaagagatgttagaagaa
cttctaaggaagattatataaacagtgagtcattcaagtacaatagaggc
tccttctgagtgttctatgtagacaatgggatcaacactttttatttcct
tatagaagaaacaagatttttgttacttatagtgttctacttctggttaa
tacaggcaaataatcttaggagttaagttttatgaatccttattctatac
atttatactatgtacttatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118188650_118189661
seq2: B6Ng01-041H22.g_80_1087 (reverse)

seq1  TAAGTACATAGTATAAAATGTATAGAATAAGGATTCAT-AAACTTAACTC  49
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TAAGTACATAGTAT-AAATGTATAGAATAAGGATTCATAAAACTTAACTC  49

seq1  CTAAGATTATTTGCCTGTTATTAACCAGAGGTAGAACACTATAAGTAACA  99
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CTAAGATTATTTGCCTG-TATTAACCAGAAGTAGAACACTATAAGTAACA  98

seq1  AAAATCTTGTTTTCTTCTATAAGGAAAATAAAATGTGTTGATCCCATTGT  149
      ||||||||| |||||||||||||| |||||||| ||||||||||||||||
seq2  AAAATCTTG-TTTCTTCTATAAGG-AAATAAAAAGTGTTGATCCCATTGT  146

seq1  CTACATAGAACACTCAGAAGGAGCCTCTATTGTACTTTGAATGACTCACT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACATAGAACACTCAGAAGGAGCCTCTATTGTAC-TTGAATGACTCACT  195

seq1  GTTTATATAATCTTCCTTAGAAGTTCTTCTAACATCTCTTGTTTTGGATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATAATCTTCCTTAGAAGTTCTTCTAACATCTCTTGTTTTGGATT  245

seq1  GTTGTCTGTGTAGAGGACAAGATATGGATGACAGTTCAGCACAACAACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGTGTAGAGGACAAGATATGGATGACAGTTCAGCACAACAACAC  295

seq1  AGAGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGACTCGGGTACAGGGTTCCAGTCCTGAGAATCCCTACTCCATGA  345

seq1  CCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGATTGATGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTATGGTGGCAGTATGGAGCAGCTGGAAGCTTTGATTGATGGC  395

seq1  TCAGAATACTGTGAACAGGAGGTGATATACCACTGTAGGAGATCCCGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATACTGTGAACAGGAGGTGATATACCACTGTAGGAGATCCCGTCT  445

seq1  GCTTAACACACCAGGTAAGGTCCTATCTTTCTTCATGGTTTGATGAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACACACCAGGTAAGGTCCTATCTTTCTTCATGGTTTGATGAAACA  495

seq1  TACCAATATTCTGTCTGTTTTTTTTTTTTTTTTTTTTTTTCTGACAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATATTCTGTCTGTTTTTTTTTTTTTTTTTTTTTTTCTGACAGAAG  545

seq1  CTAGAATCATTGGAGAAGTGGCAACCTCAATTAAAGATATGTTTACAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCATTGGAGAAGTGGCAACCTCAATTAAAGATATGTTTACAAAT  595

seq1  GGTAATTTTCTTAATGACTGATATGAGAAGCCCAGTCAATTATATGTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTCTTAATGACTGATATGAGAAGCCCAGTCAATTATATGTTGT  645

seq1  ACTATTGGATAGGTTGTCCTGAAGTATATAAGAAAAAAAACATGAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGATAGGTTGTCCTGAAGTATATAAGAAAAAAAACATGAAAATA  695

seq1  TACCTGGGAAAAAAATGAAGGAACAAGCTAAAAAGCAGTGTTCCTCTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGAAAAAAATGAAGGAACAAGCTAAAAAGCAGTGTTCCTCTATG  745

seq1  TTCTTTGCTTTGTTTCCTGATTCCAGGTCCATGGCCTGACTTCTCTCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTTTGTTTCCTGATTCCAGGTCCATGGCCTGACTTCTCTCAAT  795

seq1  AATGGAGTGTCAGTTGCAAATTATAAGCTTTTCTTCTTACATTTCATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTGTCAGTTGCAAATTATAAGCTTTTCTTCTTACATTTCATTCA  845

seq1  GTGGTGGGTGGTGGTGTTTTATCACAGCAATTGGGGAAAAAAACTTTATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGTGGTGGTGTTTTATCACAGCAATTGGGGAAAAAAACTTTATC  895

seq1  AACAGTACTTCTGATAGAGGGCTAATATCCAAAATATATAAAGAACTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACTTCTGATAGAGGGCTAATATCCAAAATATATAAAGAACTCAA  945

seq1  GACATTAGACACAAGAGAACCAAATTAAATACTATTTAAAAAATGGGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGACACAAGAGAACCAAATTAAATACTATTTAAAAAATGGGGTA  995

seq1  CACAGCTTAAAAA  1012
      |||||||||||||
seq2  CACAGCTTAAAAA  1008


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