BAC Information

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BAC

Clone NameB6Ng01-041M11
Chromosome1 (Build37)
Map Location 134,792,695 - 134,905,543
singlet/doubletdoublet
Overlap geneLrrn2, Mdm4
Upstream geneNucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream geneLOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041M11.bB6Ng01-041M11.g
ACCDH868344DH868345
length1,099538
definitionDH868344|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M11, 5' end.DH868345|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,792,695 - 134,793,796)(134,905,000 - 134,905,543)
sequence
gaattcattaagaaaataactttaaacactaaattgaatctcatagcaaa
aatcaggcagggctggagagttgtctcagcagttaagagcactggctgct
cttgcagaggactgaggtccaattcctcacacccacatggcaactcataa
ctgtctgtaactctagtccaagagacccaatttccttttctgacctcaca
ggcaccagcctcgcatgtagtatgcatacataaatgcaagccaaccacgc
atacacatacaaaataataaaagaaataaatatttttttaaaattctaaa
gctagaggaaagtctgacttttgagtgtggcattggtagatccaatagct
ggatcttgtcagtagcctctgaatgttcccgcatctcttttccctccctt
ccaccagctgcagacccagcccaggtttaaggggagccagggtctctagc
aaaggcacctccccagctcaagaaccctttcacatctgacatttgaggtt
ctctttgcaacctacaggacctttgcaagcattctgatgctcaattacat
cgtctttgtgcacttcgcatactctccttcaggtccatcaagtcttggcc
aacatcaatcatctgtccatctttgttgctgagtagtattgcaagagagg
gttggatgtgctaccgtttgttgaacccttcagccagcaggagataagcg
tcccactcggttttacaagtgaggagactaatgtgcccagggtcccatga
gaggcaaatggcacttagcaaatattaaatgagagaaaacggactgagct
ctactgcatgaggacattgtatgctttagcacctggaaagttgttctaca
cacagtaggtcctcagtaaatgcttgcccatgagatgcgcctgtgtttac
atgagtgcaagtcacatacagcttgccctgactgccaccatgtgcaggac
aggactggatcttcccagcattgtgccagacatccacatttcccatttta
cttgaatgaaagtaaactgggattctcaatgttgatcacagacaggtctg
ccatttattggcctaaatgcccaaaactatgggtgtcctggaatttcca
agtcatactgaagctagagaggaaagctgtctatatcctagatataatgg
ttttttctttatgcagcacaaggggttgaacctagggccttgtatttatg
tactccaccactgacctatgtttctagccttctgtttactattttgaaag
actatcttcctaagttgcctatgctggccttgaattcactctgtagcaaa
ggtgggccttgaatttgtgggttccccggtcttcttagtaggtatctttc
ctggtctgtggaggctggcaggcccagcttaattaagcttagtaattata
aacattgtactatatagctgcttcatcttgatatatttttaaaaaatctc
ttggataaggactttttcccttcaaacataaccacatcattactgtactc
ataagtaataatactttttatttttggtttgttcaggtgatgatccaaag
tccacacattgcattgggtttattgcaaaaaccaaaaagcttaaacctgc
cctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134792695_134793796
seq2: B6Ng01-041M11.b_34_1132

seq1  GAATTCATTAAGAAAATAACTTTAAACACTAAA-AGAATCTCATAGCAAA  49
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GAATTCATTAAGAAAATAACTTTAAACACTAAATTGAATCTCATAGCAAA  50

seq1  AATCAGGCAGGGCTGGAGAGTTGTCTCAGCAGTTAAGAGCACTGGCTGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCAGGGCTGGAGAGTTGTCTCAGCAGTTAAGAGCACTGGCTGCT  100

seq1  CTTGCAGAGGACTGAGGTCCAATTCCTCACACCCACATGGCAACTCATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGACTGAGGTCCAATTCCTCACACCCACATGGCAACTCATAA  150

seq1  CTGTCTGTAACTCTAGTCCAAGAGACCCAATTTCCTTTTCTGACCTCACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTAACTCTAGTCCAAGAGACCCAATTTCCTTTTCTGACCTCACA  200

seq1  GGCACCAGCCTCGCATGTAGTATGCATACATAAATGCAAGCCAACCACGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGCCTCGCATGTAGTATGCATACATAAATGCAAGCCAACCACGC  250

seq1  ATACACATACAAAATAATAAAAGAAATAAATATTTTTTTAAAATTCTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACAAAATAATAAAAGAAATAAATATTTTTTTAAAATTCTAAA  300

seq1  GCTAGAGGAAAGTCTGACTTTTGAGTGTGGCATTGGTAGATCCAATAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGGAAAGTCTGACTTTTGAGTGTGGCATTGGTAGATCCAATAGCT  350

seq1  GGATCTTGTCAGTAGCCTCTGAATGTTCCCGCATCTCTTTTCCCTCCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGTCAGTAGCCTCTGAATGTTCCCGCATCTCTTTTCCCTCCCTT  400

seq1  CCACCAGCTGCAGACCCAGCCCAGGTTTAAGGGGAGCCAGGGTCTCTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCTGCAGACCCAGCCCAGGTTTAAGGGGAGCCAGGGTCTCTAGC  450

seq1  AAAGGCACCTCCCCAGCTCAAGAACCCTTTCACATCTGACATTTGAGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACCTCCCCAGCTCAAGAACCCTTTCACATCTGACATTTGAGGTT  500

seq1  CTCTTTGCAACCTACAGGACCTTTGCAAGCATTCTGATGCTCAATTACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCAACCTACAGGACCTTTGCAAGCATTCTGATGCTCAATTACAT  550

seq1  CGTCTTTGTGCACTTCGCATACTCTCCTTCAGGTCCATCAAGTCTTGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTGTGCACTTCGCATACTCTCCTTCAGGTCCATCAAGTCTTGGCC  600

seq1  AACATCAATCATCTGTCCATCTTTGTTGCTGAGTAGTATTGCAAGAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAATCATCTGTCCATCTTTGTTGCTGAGTAGTATTGCAAGAGAGG  650

seq1  GTTGGATGTGCTACCGTTTGTTGAACCCTTCAGCCAGCAGGAGATAAGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGTGCTACCGTTTGTTGAACCCTTCAGCCAGCAGGAGATAAGCG  700

seq1  TCCCACTCGGTTTTACAAGTGAGGAGACTAATGTGCCCAGGGTCCCATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCGGTTTTACAAGTGAGGAGACTAATGTGCCCAGGGTCCCATGA  750

seq1  GAGGCAAATGGCACTTAGCAAATATTAAATGAGAGAAAACGGACTGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAATGGCACTTAGCAAATATTAAATGAGAGAAAACGGACTGAGCT  800

seq1  CTACTGCATGAGGACATTGTATGCTTTAGCACCTGGAAAGTTGTTCTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCATGAGGACATTGTATGCTTTAGCACCTGGAAAGTTGTTCTACA  850

seq1  CACAGTAGGTCCTCAGTAAATGCTTGCCCATGAGATGCGCCTGTGTTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGGTCCTCAGTAAATGCTTGCCCATGAGATGCGCCTGTGTTTAC  900

seq1  ATGAGTGCAAGTCACATACAGCTTGCCCTGACTGCCACCATGTGCAGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCAAGTCACATACAGCTTGCCCTGACTGCCACCATGTGCAGGAC  950

seq1  AAGACTGGATCTTCCCAGCATTGTGCCAGACATCCACACTTCCCATTTTA  999
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGACTGGATCTTCCCAGCATTGTGCCAGACATCCACATTTCCCATTTTA  1000

seq1  CTTGGAATGAAAGTAAAACTGGGACTCTCAATGTTGATCACAGACAGGTC  1049
      ||| |||||||||| ||||||||| |||||||||||||||||||||||||
seq2  CTT-GAATGAAAGT-AAACTGGGATTCTCAATGTTGATCACAGACAGGTC  1048

seq1  TGCCATTTTATTGCCTAAAATGCCCAAAACTATTGGTTGTCTTGTAATTT  1099
      ||||| ||||||| |  ||||||||||||||| ||| |||| || |||||
seq2  TGCCA-TTTATTGGCCTAAATGCCCAAAACTA-TGGGTGTCCTGGAATTT  1096

seq1  CCA  1102
      |||
seq2  CCA  1099

seq1: chr1_134905000_134905543
seq2: B6Ng01-041M11.g_69_612 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAGGGCAGGTTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGGGCAGGTTTAAGC  50

seq1  TTTTTGGTTTTTGCAATAAACCCAATGCAATGTGTGGACTTTGGATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTGCAATAAACCCAATGCAATGTGTGGACTTTGGATCATC  100

seq1  ACCTGAACAAACCAAAAATAAAAAGTATTATTACTTATGAGTACAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACAAACCAAAAATAAAAAGTATTATTACTTATGAGTACAGTAAT  150

seq1  GATGTGGTTATGTTTGAAGGGAAAAAGTCCTTATCCAAGAGATTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTTATGTTTGAAGGGAAAAAGTCCTTATCCAAGAGATTTTTTAA  200

seq1  AAATATATCAAGATGAAGCAGCTATATAGTACAATGTTTATAATTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCAAGATGAAGCAGCTATATAGTACAATGTTTATAATTACTAA  250

seq1  GCTTAATTAAGCTGGGCCTGCCAGCCTCCACAGACCAGGAAAGATACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTAAGCTGGGCCTGCCAGCCTCCACAGACCAGGAAAGATACCTA  300

seq1  CTAAGAAGACCGGGGAACCCACAAATTCAAGGCCCACCTTTGCTACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGACCGGGGAACCCACAAATTCAAGGCCCACCTTTGCTACAGAG  350

seq1  TGAATTCAAGGCCAGCATAGGCAACTTAGGAAGATAGTCTTTCAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAGGCCAGCATAGGCAACTTAGGAAGATAGTCTTTCAAAATAG  400

seq1  TAAACAGAAGGCTAGAAACATAGGTCAGTGGTGGAGTACATAAATACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGGCTAGAAACATAGGTCAGTGGTGGAGTACATAAATACAAG  450

seq1  GCCCTAGGTTCAACCCCTTGTGCTGCATAAAGAAAAAACCATTATATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGTTCAACCCCTTGTGCTGCATAAAGAAAAAACCATTATATCTA  500

seq1  GGATATAGACAGCTTTCCTCTCTAGCTTCAGTATGACTGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGACAGCTTTCCTCTCTAGCTTCAGTATGACTGAATTC  544