BAC Information

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BAC

Clone NameB6Ng01-041N05
Chromosome1 (Build37)
Map Location 92,912,118 - 93,060,395
singlet/doubletdoublet
Overlap geneLrrfip1, Gm817
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneLOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N05.bB6Ng01-041N05.g
ACCDH868374DH868375
length1,088658
definitionDH868374|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N05, 5' end.DH868375|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,059,313 - 93,060,395)(92,912,118 - 92,912,775)
sequence
gaattccagtttttctcagttgtaaaagtagcttagtctcttgaaatggc
tatgaaaattaaagggggctctgactgttatttctgtcttacagaggagg
acgtgtacaaaggcctgggcagttccagtcactcatctattaagaggtag
tgttggatccaggcacagtccctcatcactattcataccttgcctttctc
tttcatttactaatctgttatctatctggatagtaatgtgtgtgtcctgg
agagaggacagtgaagctctctcttcacagttgagatgccgacactgcag
tcaagtgctgcagtagaaaagagcagtgactgcgtcgctcacagaagcat
ctcccaccatctcttctcctttcaccagtccagtaaaactgctcaatcct
gtgggctgagcactgtgtctgaagaaaggaagacttaataactacttgtt
ctttaaaactttcacctccaactggccaattttctgactttttaagaata
aggaatacaaaaggaataaaagtacaaagaggaacaaaatacttttatag
cccatctatctcccaaaagaacatagacaaagtaagcatcattttcaggt
aagctaggttataattttttctgtacatccttacaaacctaatggattcc
ttggctgccattcctcacattccgctgtgctgtcctgagtttctgagaag
tcagctccaatcagcctctctgtggcatcaaaccagtcttcacttgcttc
ctggacggttttacactctaaggcacaaggcacgaggaaccataaactgt
gcgtgtctacctctcagaacacattttataaacacctctgccaagacaag
ggtaacctttatgtgtgacctagagatgggcccgtggaacagcaagccag
gtctctgacctggtcttgtcgaatgcactgagcacaaagctctttcagtc
taaaggcttccagtccccaattccttaactgaacactgatgcccagtgta
tcaaaagcgttccctcttctgacttttggaagttactctttatggaagaa
atatttggacatgaacaacccagtaaacccacctgcat
gaattctttccaacaatccaggggaggggcctgtgacctcactaggggct
tcgtgggtgatcaggtcgccttgcacgctgccagtgtgctgagatcccac
accctaaaaaggcattaattgtgttcaggaaggctcctgcctcagatggt
ggcactcacccaggggctgaagtcatttggaccctgtatggaacattctc
ctgtgtggctgccctgctggggcgaagcacttgaatcgcaggaatttcaa
tgtattaatagaccctgccaggtgcaataaatagctgcctttgcccgacc
ttcacctctcatggcactgagctttgagaggccctgcacacccctggagt
aacagaacgcatatgagggaggggtctccctgtgagagacaggcagtggt
gggctgtgccccacagatgaaaacaaaaaaaatgaacaaaaggttgaaga
tgtgtctcaggaaagcagaaaatcagctaggctagtccaccctcccaccc
ctcaaccctcatgctcccaccccacacccacaccccactccccaccctcc
caccccactccaccccacaccctcacaccttaccactcaccctcccaacc
ccaccctccaccacacccccactctcccaccccaaccccacccccatgcc
ccatctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93059313_93060395
seq2: B6Ng01-041N05.b_46_1133 (reverse)

seq1  ATGCA-GTGTGTTTACTGGGTTTGTCATGTCCAAATATTTCTTCCATAAA  49
      ||||| ||| ||||||||||||  ||||||||||||||||||||||||||
seq2  ATGCAGGTGGGTTTACTGGGTTGTTCATGTCCAAATATTTCTTCCATAAA  50

seq1  GAGTAACTTCCAAAAGTCAG-AGAGGG-ACGCTTTTGATACACTGGGCAT  97
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GAGTAACTTCCAAAAGTCAGAAGAGGGAACGCTTTTGATACACTGGGCAT  100

seq1  CAGTGTTCAGTTAAGGAAATTGGGGACTGGAAGCC-TTAGACTGAAAGAG  146
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  CAGTGTTCAGTTAAGG-AATTGGGGACTGGAAGCCTTTAGACTGAAAGAG  149

seq1  CTTTGTGCTCAGTGCCTTCGACAAGACCAGGTCAGAGACCTGGCTTGCTG  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTCAGTGCATTCGACAAGACCAGGTCAGAGACCTGGCTTGCTG  199

seq1  TTCCACGGGCCCATCTCTAGGTCACACATAAAGGTTACCCTTGTCTTGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGGGCCCATCTCTAGGTCACACATAAAGGTTACCCTTGTCTTGGC  249

seq1  AGAGGTGTTTAT-AAATGTGTTCTGAGAGGTAGACACGCACAGTTTATGG  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGTTTATAAAATGTGTTCTGAGAGGTAGACACGCACAGTTTATGG  299

seq1  TTCCTCGTG-CTTGTGCCTTAGAGTGTAAAACCGTCCAGGAAGCAAGTGA  344
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGTGCCTTGTGCCTTAGAGTGTAAAACCGTCCAGGAAGCAAGTGA  349

seq1  AGACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAA  399

seq1  CTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGGAATCCATTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGGAATCCATTA  449

seq1  GGTTTGTAAGGATGTACAGAAAAAATTATAACCTAGCTTACCTGAAAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAAGGATGTACAGAAAAAATTATAACCTAGCTTACCTGAAAATG  499

seq1  ATGCTTACTTTGTCTATGTTCTTTTGGGAGATAGATGGGCTATAAAAGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACTTTGTCTATGTTCTTTTGGGAGATAGATGGGCTATAAAAGTA  549

seq1  TTTTGTTCCTCTTTGTACTTTTATTCCTTTTGTATTCCTTATTCTTAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCTCTTTGTACTTTTATTCCTTTTGTATTCCTTATTCTTAAAA  599

seq1  AGTCAGAAAATTGGCCAGTTGGAGGTGAAAGTTTTAAAGAACAAGTAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAATTGGCCAGTTGGAGGTGAAAGTTTTAAAGAACAAGTAGTT  649

seq1  ATTAAGTCTTCCTTTCTTCAGACACAGTGCTCAGCCCACAGGATTGAGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTTCCTTTCTTCAGACACAGTGCTCAGCCCACAGGATTGAGCA  699

seq1  GTTTTACTGGACTGGTGAAAGGAGAAGAGATGGTGGGAGATGCTTCTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGGACTGGTGAAAGGAGAAGAGATGGTGGGAGATGCTTCTGTG  749

seq1  AGCGACGCAGTCACTGCTCTTTTCTACTGCAGCACTTGACTGCAGTGTCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACGCAGTCACTGCTCTTTTCTACTGCAGCACTTGACTGCAGTGTCG  799

seq1  GCATCTCAACTGTGAAGAGAGAGCTTCACTGTCCTCTCTCCAGGACACAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAACTGTGAAGAGAGAGCTTCACTGTCCTCTCTCCAGGACACAC  849

seq1  ACATTACTATCCAGATAGATAACAGATTAGTAAATGAAAGAGAAAGGCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTATCCAGATAGATAACAGATTAGTAAATGAAAGAGAAAGGCAA  899

seq1  GGTATGAATAGTGATGAGGGACTGTGCCTGGATCCAACACTACCTCTTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATAGTGATGAGGGACTGTGCCTGGATCCAACACTACCTCTTAA  949

seq1  TAGATGAGTGACTGGAACTGCCCAGGCCTTTGTACACGTCCTCCTCTGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGTGACTGGAACTGCCCAGGCCTTTGTACACGTCCTCCTCTGTA  999

seq1  AGACAGAAATAACAGTCAGAGCCCCCTTTAATTTTCATAGCCATTTCAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATAACAGTCAGAGCCCCCTTTAATTTTCATAGCCATTTCAAG  1049

seq1  AGACTAAGCTACTTTTACAACTGAGAAAAACTGGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGCTACTTTTACAACTGAGAAAAACTGGAATTC  1088

seq1: chr1_92912118_92912775
seq2: B6Ng01-041N05.g_68_725

seq1  GAATTCTTTCCAACAATCCAGGGGAGGGGCCTGTGACCTCACTAGGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAACAATCCAGGGGAGGGGCCTGTGACCTCACTAGGGGCT  50

seq1  TCGTGGGTGATCAGGTCGCCTTGCACGCTGCCAGTGTGCTGAGATCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGTGATCAGGTCGCCTTGCACGCTGCCAGTGTGCTGAGATCCCAC  100

seq1  ACCCTAAAAAGGCATTAATTGTGTTCAGGAAGGCTCCTGCCTCAGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAAAAGGCATTAATTGTGTTCAGGAAGGCTCCTGCCTCAGATGGT  150

seq1  GGCACTCACCCAGGGGCTGAAGTCATTTGGACCCTGTATGGAACATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCACCCAGGGGCTGAAGTCATTTGGACCCTGTATGGAACATTCTC  200

seq1  CTGTGTGGCTGCCCTGCTGGGGCGAAGCACTTGAATCGCAGGAATTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGCTGCCCTGCTGGGGCGAAGCACTTGAATCGCAGGAATTTCAA  250

seq1  TGTATTAATAGACCCTGCCAGGTGCAATAAATAGCTGCCTTTGCCCGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATAGACCCTGCCAGGTGCAATAAATAGCTGCCTTTGCCCGACC  300

seq1  TTCACCTCTCATGGCACTGAGCTTTGAGAGGCCCTGCACACCCCTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTCATGGCACTGAGCTTTGAGAGGCCCTGCACACCCCTGGAGT  350

seq1  AACAGAACGCATATGAGGGAGGGGTCTCCCTGTGAGAGACAGGCAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACGCATATGAGGGAGGGGTCTCCCTGTGAGAGACAGGCAGTGGT  400

seq1  GGGCTGTGCCCCACAGATGAAAACAAAAAAAATGAACAAAAGGTTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCCCCACAGATGAAAACAAAAAAAATGAACAAAAGGTTGAAGA  450

seq1  TGTGTCTCAGGAAAGCAGAAAATCAGCTAGGCTAGTCCACCCTCCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGGAAAGCAGAAAATCAGCTAGGCTAGTCCACCCTCCCACCC  500

seq1  CTCAACCCTCATGCTCCCACCCCACACCCACACCCCACTCCCCACCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCTCATGCTCCCACCCCACACCCACACCCCACTCCCCACCCTCC  550

seq1  CACCCCACTCCACCCCACACCCTCACACCTTACCACTCACCCTCCCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTCCACCCCACACCCTCACACCTTACCACTCACCCTCCCAACC  600

seq1  CCACCCTCCACCCCACCCCCACTCTCCCACCCCAACCCCACCCCCATACC  650
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  CCACCCTCCACCACACCCCCACTCTCCCACCCCAACCCCACCCCCATGCC  650

seq1  CCATCTCC  658
      ||||||||
seq2  CCATCTCC  658