BAC Information

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BAC

Clone NameB6Ng01-041O01
Chromosome1 (Build37)
Map Location 187,913,190 - 188,054,879
singlet/doubletdoublet
Overlap geneLyplal1
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041O01.bB6Ng01-041O01.g
ACCDH868409DH868410
length800863
definitionDH868409|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O01, 5' end.DH868410|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,913,190 - 187,913,987)(188,054,023 - 188,054,879)
sequence
gaattccaggaactattaatctgtatcaagtaggcaccacattttattgc
ttaattatcaactcaattttagtttcattgtgcttatgtttcatgtcaca
tttgcttatttgttatttaaatctggaacttacctggtaaacaacagatg
ctttattcagaaaaccagaaagaacaaatactcctgccacatctgggtga
cttctgtatgctaaatgcatcgccatgcagcctcccatagaaaatccccc
tacaggaagaagcaacgcacgtgcttattagaagacgaggagcacacacg
tggtcccaaggtacttcacaatcaaacaggtcactaccaatcgttcacaa
gcattttaaagactctggagatatgaaggagatatactcctaaaaagaac
gtcagttgccatcttaggctgaagagacaccatggccactgcaaatccta
taaaagaaagcttttaattggggtttgtttacagtttcacagggttggtc
cgttatcatcaaggtgggcatcatggtggcaggcaggcaaacatggtgtt
ggagaggaagctgagagctgcactctgatcctcaagtgaagagatgggga
cagggtgtgggggagcatgcctgggcctggagtagacacttgagacctca
aattccaccaccagcccagggagacagtttcttccaacaagggcatctac
ttctacttatcctttcacccagtcccactccctggtgactaagccttcag
agtcatgctttctcttgccttagtcttcttaagtgcagaatactgcacta

gaattcactattggatgagacttgccctccctagaccagtgtcacctcat
ttcaaagaaagcagcaaggagcccaggtctttgcattgttcttgaaggtt
aaataaggcctctgtgagtagcttcaatatgaatctgcaactgttccggg
gagaaaactgtcatttgctggccccagtgtggagctggcagatgaagctg
agaaccaacaagcacactgggaaaggacaatgatgagccagtggcttatc
gatgaggagtgcattttccaaacggggagtctgcttaccagaaaacaatg
tctgtacctaaactttaactcatttctgcatctacagcagcacacaacag
gcactaattactacctgccgactgtgtaggacccacatcagagatattat
gcatacatagcaacccacagtaagagggagtgaattataccctgcaagcc
aaatctggcccgtggcttatatttgtaaataaagtttgattaagaagcca
cacttgtttgcttaaatatgcctactgataattttgtgctatagggaaga
atacagtattctcaagagataactcttacgattccccaaaggcaaaaata
attattatctgactttggttctttacagaggtttttgttgttcttttcca
aatattgtccaataaaaactgagttacccatttcctccttcttcacaagc
agatccctatttttttccagtattatggtcaactgtagttgcattatttc
cacctggaagctatttactttaatgctttctactttttcctcttaccatc
acagagaccaaaccgcctgtagaaacacctttaacgagggagggaagatt
tgacttgtgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187913190_187913987
seq2: B6Ng01-041O01.b_43_842

seq1  GAATTCCAGGAACTATTAATCTGTATCAAGTAGGCACCACATTTTATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACTATTAATCTGTATCAAGTAGGCACCACATTTTATTGC  50

seq1  TTAATTATCAACTCAATTTTAGTTTCATTGTGCTTATGTTTCATGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATCAACTCAATTTTAGTTTCATTGTGCTTATGTTTCATGTCACA  100

seq1  TTTGCTTATTTGTTATTTAAATCTGGAACTTACCTGGTAAACAACAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATTTGTTATTTAAATCTGGAACTTACCTGGTAAACAACAGATG  150

seq1  CTTTATTCAGAAAACCAGAAAGAACAAATACTCCTGCCACATCTGGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAGAAAACCAGAAAGAACAAATACTCCTGCCACATCTGGGTGA  200

seq1  CTTCTGTATGCTAAATGCATCGCCATGCAGCCTCCCATAGAAAATCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATGCTAAATGCATCGCCATGCAGCCTCCCATAGAAAATCCCCC  250

seq1  TACAGGAAGAAGCAACGCACGTGCTTATTAGAAGACGAGGAGCACACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAGAAGCAACGCACGTGCTTATTAGAAGACGAGGAGCACACACG  300

seq1  TGGTCCCAAGGTACTTCACAATCAAACAGGTCACTACCAATCGTTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAAGGTACTTCACAATCAAACAGGTCACTACCAATCGTTCACAA  350

seq1  GCATTTTAAAGACTCTGGAGATATGAAGGAGATATACTCCTAAAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAAAGACTCTGGAGATATGAAGGAGATATACTCCTAAAAAGAAC  400

seq1  GTCAGTTGCCATCTTAGGCTGAAGAGACACCATGGCCACTGCAAATCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGCCATCTTAGGCTGAAGAGACACCATGGCCACTGCAAATCCTA  450

seq1  TAAAAGAAAGCTTTTAATTGGGGTTTGTTTACAGTTTCACAGGGTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAGCTTTTAATTGGGGTTTGTTTACAGTTTCACAGGGTTGGTC  500

seq1  CGTTATCATCAAGGTGGGCATCATGGTGGCAGGCAGGCAAACATGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATCATCAAGGTGGGCATCATGGTGGCAGGCAGGCAAACATGGTGTT  550

seq1  GGAGAGGAAGCTGAGAGCTGCACTCTGATCCTCAAGTGAAGAGATGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGCTGAGAGCTGCACTCTGATCCTCAAGTGAAGAGATGGGGA  600

seq1  CAGGGTGTGGGGGAGCATGCCTGGGCCTGGAGTAGACACTTGAGACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTGGGGGAGCATGCCTGGGCCTGGAGTAGACACTTGAGACCTCA  650

seq1  AATTCCACCACCAGCCCAGGGAGACAG-TTCTTCCAACAAGGGCATCTAC  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTCCACCACCAGCCCAGGGAGACAGTTTCTTCCAACAAGGGCATCTAC  700

seq1  TTCTACTTATCCTTTCACCCAGTCCCACTCCCTGGTGACTAAGCCTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTATCCTTTCACCCAGTCCCACTCCCTGGTGACTAAGCCTTCAG  750

seq1  AGTCATGC-TTCTCTTGCCTTAGTCTTCTTAAGTGCAGAATACTGCACTA  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTTTCTCTTGCCTTAGTCTTCTTAAGTGCAGAATACTGCACTA  800

seq1: chr1_188054023_188054879
seq2: B6Ng01-041O01.g_69_931 (reverse)

seq1  TGAGCACAAGTC-AATCTTCCCTCCCTCGTTTAAGGTGTTTCTACAGGCG  49
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TGAGCACAAGTCAAATCTTCCCTCCCTCGTTAAAGGTGTTTCTACAGGCG  50

seq1  GTTTGGTCTCTGTGATGGTAAGAGG-AACAGTAG-AAGCATT-AAGTAAA  96
      ||||||||||||||||||||||||| || ||||| ||||||| |||||||
seq2  GTTTGGTCTCTGTGATGGTAAGAGGAAAAAGTAGAAAGCATTAAAGTAAA  100

seq1  TAGCTTCCAGGTGGAAATAATGCAACTACAGTTGACCATAATACTGGAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCAGGTGGAAATAATGCAACTACAGTTGACCATAATACTGGAAA  150

seq1  AAAATAGGGATCTGCTTGTGAAGAAGGAGGAAATGGGTAACTCAG-TTTT  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATAGGGATCTGCTTGTGAAGAAGGAGGAAATGGGTAACTCAGTTTTT  200

seq1  ATTGGACAATATTTGGAAAAGAACAACAAAAACCTCTGTAAAGAACCAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAATATTTGGAAAAGAACAACAAAAACCTCTGTAAAGAACCAAA  250

seq1  GTCAGATAATAATTATTTTTGCCTTTGGGGAATCGTAAGAGTTATCTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAATAATTATTTTTGCCTTTGGGGAATCGTAAGAGTTATCTCTT  300

seq1  GAGAATACTGTATTCTTCCCTATAGCACAAAATTATCAGTAGGCATATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACTGTATTCTTCCCTATAGCACAAAATTATCAGTAGGCATATTT  350

seq1  AAGCAAACAAGTGTGGCTTCTTAATCAAACTTTATTTACAAATATAAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGTGTGGCTTCTTAATCAAACTTTATTTACAAATATAAGCC  400

seq1  ACGGGCCAGATTTGGCTTGCAGGGTATAATTCACTCCCTCTTACTGTGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCCAGATTTGGCTTGCAGGGTATAATTCACTCCCTCTTACTGTGGG  450

seq1  TTGCTATGTATGCATAATATCTCTGATGTGGGTCCTACACAGTCGGCAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGTATGCATAATATCTCTGATGTGGGTCCTACACAGTCGGCAGG  500

seq1  TAGTAATTAGTGCCTGTTGTGTGCTGCTGTAGATGCAGAAATGAGTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTAGTGCCTGTTGTGTGCTGCTGTAGATGCAGAAATGAGTTAAA  550

seq1  GTTTAGGTACAGACATTGTTTTCTGGTAAGCAGACTCCCCGTTTGGAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTACAGACATTGTTTTCTGGTAAGCAGACTCCCCGTTTGGAAAA  600

seq1  TGCACTCCTCATCGATAAGCCACTGGCTCATCATTGTCCTTTCCCAGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCTCATCGATAAGCCACTGGCTCATCATTGTCCTTTCCCAGTGT  650

seq1  GCTTGTTGGTTCTCAGCTTCATCTGCCAGCTCCACACTGGGGCCAGCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGGTTCTCAGCTTCATCTGCCAGCTCCACACTGGGGCCAGCAAA  700

seq1  TGACAGTTTTCTCCCCGGAACAGTTGCAGATTCATATTGAAGCTACTCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTTCTCCCCGGAACAGTTGCAGATTCATATTGAAGCTACTCAC  750

seq1  AGAGGCCTTATTTAACCTTCAAGAACAATGCAAAGACCTGGGCTCCTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTTATTTAACCTTCAAGAACAATGCAAAGACCTGGGCTCCTTGC  800

seq1  TGCTTTCTTTGAAATGAGGTGACACTGGTCTAGGGAGGGCAAGTCTCATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTTGAAATGAGGTGACACTGGTCTAGGGAGGGCAAGTCTCATC  850

seq1  C-CTAGTGAATTC  857
      |  ||||||||||
seq2  CAATAGTGAATTC  863