BAC Information

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BAC

Clone NameB6Ng01-041P21
Chromosome1 (Build37)
Map Location 141,987,648 - 141,988,676
singlet/doubletsinglet
Overlap geneCfh
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041P21.bB6Ng01-041P21.g
ACCDH868495DH868496
length1,2331,056
definitionDH868495|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P21, 5' end.DH868496|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcctcggctgaagtcaccttttggtgagcatttacatgggaca
caaatatcttcacatcctttgcccatttggagagatctatccacatactt
cttccccagatgtctttctcaccaattttccaattgtgatctttccaagt
gcctgaccatccagccaatccattggctacagcccatgagtcagtgaata
atcgtacatctggccatttcttcttgcaaacaaactgtaataccatgtgt
actgcacgaagttctgcccactgtgaagatttcccttcacctgtgtcttt
caaggttgtcccagaaaggggttgtaatgctgcagctgtccacttctggg
tggtacctgcataacgtgcagagccatcagtaaaccaggctctagtcttc
tcctcttcagtcagttgatcatagggaacaccccatgaggctataggtgc
atgcttggcagcagatggcattgtaacaggagtagaaaccataggcattt
gagcaacttcttcatgtaacttgcttgtgccttcaggacctgctctggcc
cgatcacgtatataccacttccatttgataatagactgctgctgtgcgcg
tcccactttatgacttgcagggtctgatagtacccagctcatgatgggta
gttcaggtcgcatagtaacttggtgtcctattgtcaaacgttcagtttcc
actaaggcccaatagcaggccaagagctgtttttcaaagggagaatagtt
gtctgcagatgatggtagagctttgctccaaaatcccaaaggtcttttct
gtgattcacctacaggggcctgccagaggctccaaacagcatctctatca
gccacagatacctcaagtaccatcgggtctgctgggtcatatggtccaag
tggtagagcagcctgcacagcagcctggacctgttgaaggccttctcctg
ttccaggccccacacaaagctagcagctttcgagtcacttggtaataggc
ctaagtacacacccagtgaggatgtgttgtctccagaatccaatagccca
cttaacgtgtgctctttctgttgtagagggcagtgcatactatcttcacc
ttagaaagaaatttctgcacgcccccacccttgaaccctaggatccatga
ggtaatgcttgattggtggaattattcatctgaagcaattgtacaggcca
gtgtaattctggtcgcattggtcacaccgacca
gaattcttcatagggctggatttatagatagatattgtttgaatttattt
ttgtcttggaatattttgatgtcttcttctatgttgattaggagttttgc
ggggtatagtagcctgtgctggtgtttgttttgtcttagtgtctgcctga
cctctgtccaggctcttctggcttttggtgtctctgttgagaagtctggt
gtaattctgatctgtctgcctttgcatgttacttgacatttttccctcac
agcatttaatattttctttgttctttgcttttaatgttttgaatattatg
ttatgagaggattttcttttctggtccaatctatttggtgttatatatgc
ttcttgtacatttaaggccatctctttcttagaactcatgggaggccttc
atgctgtgatgtcttcagaagagcagcaaagctgattatgtcttttttct
cctttttcaccttgatttggaggagtggttctcaagaacttaatggaagc
atgaatttttaagtgcttttgaatatacaatgcaagaatgctatctctaa
tagtttacttttttaaaatggaatttttattaagtaaaagtttaaatgaa
aagtttccatctgtgttgatagtgctctatcctaagaaccataaaccatg
taacaataaagccaacattaagcatgagaaaccattttcaaaataatagt
catagttgtccaagattttcttggcagtatgtataaggacaattactcag
actagaatctgagaaatttctatagctgaatataccacacacattacata
cagggcctagagaatcttgagctcatattgtcttgaatgcttcctcatta
aaaattggctatcataccagatgcaccatgaaacttccaaagagggagga
accacagcgtattcatgatgacgtctatgacacagaatgatggctggata
actcctattttttggtttttttttattagatattttctgtactacatttc
aaatggtaccccctgtcctcaaggtcccctgaaaatccccactgccacca
cctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141987648_141988676
seq2: B6Ng01-041P21.g_109_1124 (reverse)

seq1  GGCAGGTGGTTGCAGTGGGGGTTTTTCAGTGGGGACTTGAGGACAGGGGG  50
      |||||||||| ||||| |||| ||||||| |||  |||||||||||||||
seq2  GGCAGGTGGTGGCAGT-GGGGATTTTCAG-GGGACCTTGAGGACAGGGGG  48

seq1  TAACATTTGAAATGTAGTTACAGAAAATATCTAATAAAAAAAAAACAAAA  100
      || |||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TACCATTTGAAATGTAG-TACAGAAAATATCTAATAAAAAAAAACCAAAA  97

seq1  AATAGGAGTTATCCAGCCATCATTTCTGTTGTTCATAGACGTCATCATTG  150
      |||||||||||||||||||||| ||||||   ||||||||||||||| ||
seq2  AATAGGAGTTATCCAGCCATCA-TTCTGT--GTCATAGACGTCATCA-TG  143

seq1  AATATCGCTGTTGGTTCCTCCCTTCTTTTGGAAGTTTTCATGGTGCATTC  200
      |||| ||||| ||||||||||||   |||||||| |||||||||||| ||
seq2  AATA-CGCTG-TGGTTCCTCCCT--CTTTGGAAG-TTTCATGGTGCA-TC  187

seq1  TGGTATGATAGCCAATTTTTAATGAGGAAGCATTCAAGACAATATGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGATAGCCAATTTTTAATGAGGAAGCATTCAAGACAATATGAGCT  237

seq1  CAAGATTCTCTAGGCCCTGTATGTAATGTGTGTGGTATATTCAGCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCTCTAGGCCCTGTATGTAATGTGTGTGGTATATTCAGCTATAG  287

seq1  AAATTTCTCAGATTCTAGTCTGAGTAATTGTCCTTATACATACTGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCAGATTCTAGTCTGAGTAATTGTCCTTATACATACTGCCAAG  337

seq1  AAAATCTTGGACAACTATGACTATTATTTTGAAAGTGGTTTCTCATGCTT  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAATCTTGGACAACTATGACTATTATTTTGAAAATGGTTTCTCATGCTT  387

seq1  AATGTTGGCTTTATTGTTACATGGTTTATGGTTCTTAGGATAGAGCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGCTTTATTGTTACATGGTTTATGGTTCTTAGGATAGAGCACTA  437

seq1  TCAACACAGATGGAAACTTTTCATTTAAACTTTTACTTAATAAAAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAGATGGAAACTTTTCATTTAAACTTTTACTTAATAAAAATTCC  487

seq1  ATTTTAAAAAAGTAAACTATTAGAGATAGCATTCTTGCATTGTATATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAAAGTAAACTATTAGAGATAGCATTCTTGCATTGTATATTCA  537

seq1  AAAGCACTTAAAAATTCATGCTTCCATTAAGTTCTTGAGAACCACTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTAAAAATTCATGCTTCCATTAAGTTCTTGAGAACCACTCCTC  587

seq1  CAAATCAAGGTGAAAAAGGAGAAAAAAGACATAATCAGCTTTGCTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAGGTGAAAAAGGAGAAAAAAGACATAATCAGCTTTGCTGCTCT  637

seq1  TCTGAAGACATCACAGCATGAAGGCCTCCCATGAGTTCTAAGAAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACATCACAGCATGAAGGCCTCCCATGAGTTCTAAGAAAGAGAT  687

seq1  GGCCTTAAATGTACAAGAAGCATATATAACACCAAATAGATTGGACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAATGTACAAGAAGCATATATAACACCAAATAGATTGGACCAGA  737

seq1  AAAGAAAATCCTCTCATAACATAATATTCAAAACATTAAAAGCAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATCCTCTCATAACATAATATTCAAAACATTAAAAGCAAAGAAC  787

seq1  AAAGAAAATATTAAATGCTGTGAGGGAAAAATGTCAAGTAACATGCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATTAAATGCTGTGAGGGAAAAATGTCAAGTAACATGCAAAG  837

seq1  GCAGACAGATCAGAATTACACCAGACTTCTCAACAGAGACACCAAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGATCAGAATTACACCAGACTTCTCAACAGAGACACCAAAAGCC  887

seq1  AGAAGAGCCTGGACAGAGGTCAGGCAGACACTAAGACAAAACAAACACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCCTGGACAGAGGTCAGGCAGACACTAAGACAAAACAAACACCA  937

seq1  GCACAGGCTACTATACCCCGCAAAACTCCTAATCAACATAGAAGAAGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCTACTATACCCCGCAAAACTCCTAATCAACATAGAAGAAGACA  987

seq1  TCAAAATATTCCAAGACAAAAATAAATTC  1029
      |||||||||||||||||||||||||||||
seq2  TCAAAATATTCCAAGACAAAAATAAATTC  1016