BAC Information

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BAC

Clone NameB6Ng01-042A09
Chromosome1 (Build37)12 (Build37)
Map Location 144,276,491 - 144,277,016120,511,704 - 120,512,928
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042A09.bB6Ng01-042A09.g
ACCDH868517DH868518
length1,0031,216
definitionDH868517|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A09, 5' end.DH868518|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,276,491 - 144,277,016)(120,511,704 - 120,512,928)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagttcaccttcttgagttctttatatatattggatactagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatctttgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccatggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtaccatgcagttttgatcacaattgct
ctgtagtacagttttaggtctggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatccttggttttttgttattccagatga
atctgccgattgccctttcacatttcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgctttttggcaagatagccatt
tttacaatgttgatcctgcccatccatgagaatggggagatctttccatc
ttctgagatctttttaatttcttcttgagacttgaagttctatcatacag
atctttcacttccttagttgagtcacgccaagggattttatatattggga
ctattgagaggggttgcttcgtaaattctttctcagcctggttatccttt
gtg
gaattctgggaattgaattgaggtcatttggtttagtggctagagtctca
cctgctgagccatgtcatcagcctgatcctattttccaaagcaaatcttt
ctcatattttcagttaagaaattcttaaaattgttccaattataatcttt
tgcacaagaccagtgggactagaattaaaggaatcaagataaaatagcaa
tgaatatgagagaaagaagtcaactaggggcacggcaacaaaagagagac
agagacagaaacaatgagtagagaaacaaagacagcgaacacaaaaggca
caaactgcttttaaaaaaagtataaagagaacaagaatgaagacagataa
taccagggaaagaaacctaaggcaaagctaataggttaagagatgaatat
tgaaaagggaagaaaataagacacaggaataaagcatggggagggttgaa
aaatataaagcagaagggcaggatggacaaaaagatgcctggatttaagg
aaaagaaagccaagggcctcaaaaaggctagagatcagcaaagatagaaa
gtgactagattttaaaggggtaggttaggagcaaaagcaaacaagaggct
gggcaaagcagagccacaaaagcccagggctgtttgttttcttttgtgag
tgaagtttagacagtgtgagtggagttagcagatggatgggaaatgcttt
actggcgaccacaatcctgctttggtattgttagggatctggcataatgg
tgtcagtctcagctaagactacctgtttcctctccagtaaaggatagctg
ctgtatttatgtccttctgcagtttgcaagctgttggaattcccataaac
tgaccatataggtaagctaggaaaatccagtacaaatccaggcaaaataa
aaagaaaaggatcctgtctgggctgtgaaaataaataaaatcatctctat
ttggatggtcttgctgcttagtttttaaattttggtgtttgctttgtgtt
gttgttagtcttgtttgttttcaggactagtttactttactttaggcaat
ctcatggaaatatccaatcttgaaggcatggccaatacaaattactacta
aaagaaccaatggtcaacaaaccaccacgttaagggaaattttactctaa
tattataggagctaagatggtcttgggaaagattttctaatgacaggagg
tggcctgtgttgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144276491_144277016
seq2: B6Ng01-042A09.b_529_1050 (reverse)

seq1  CACAAAGGATAAGCAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCT  50
      |||||||||||| ||||||||||||||| |||  ||| ||  |||| |||
seq2  CACAAAGGATAACCAGGCTGAGAAAGAATTTA-CGAAGCA--ACCCCTCT  47

seq1  CAATAATCCTAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAA  100
      ||||| ||| ||   ||||||||| |||||||||||||| ||||||||||
seq2  CAATAGTCCCAA--TATATAAAATCCCTTGGCGTGACTC-AACTAAGGAA  94

seq1  ATGAAAGATCTGTATGATAAGAACTTCACGTCTCTGAATAAAGAATT-TT  149
       ||||||||||||||||| ||||||||| |||||  || ||  ||||   
seq2  GTGAAAGATCTGTATGAT-AGAACTTCAAGTCTC--AAGAAGAAATTAAA  141

seq1  AAGATGTCAGAAGATGGAAAGATCT-CCCATGCTCATGGATTGGCAGGAT  198
      ||||| ||||||||||||||||||| ||||| ||||||||| ||||||||
seq2  AAGATCTCAGAAGATGGAAAGATCTCCCCATTCTCATGGATGGGCAGGAT  191

seq1  CAATATAGTAAAAATGGCTATCTTTCC-AAAAGCAATCTACAGATTCAAT  247
      ||| || ||||||||||||||||| || ||||||||||||||||||||||
seq2  CAACATTGTAAAAATGGCTATCTTGCCAAAAAGCAATCTACAGATTCAAT  241

seq1  GCAATCCCCATCAAAATTCCAAATCTATTCTTCAACG-AATTAGAAAGGG  296
      |||||||||||||||||||||| || ||||||||||| |||  |||||||
seq2  GCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAAATGTGAAAGGG  291

seq1  CAATCTGCAAATTCACCTGGAATAACAAAAAACCTAGGATAGCAAAAACT  346
      ||||| ||| ||||| |||||||||||||||||| |||||||||||||||
seq2  CAATCGGCAGATTCATCTGGAATAACAAAAAACCAAGGATAGCAAAAACT  341

seq1  CTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAA  396
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCAGACCTAAA  391

seq1  GCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCA  446
       ||||||||||||||||||||||| |||||||||||||||||||||||  
seq2  ACTGTACTACAGAGCAATTGTGATCAAAACTGCATGGTACTGGTATAGTG  441

seq1  ACAGACAAGTAGTCCAATGGAATA-AATTGAAGACTCAGAAATGAACCCA  495
      |||||||||||| ||||||||| | |||||||||| |||| |||||||||
seq2  ACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCA  491

seq1  CACACCTATGGTCACTTGATCTTTGACAAGG  526
      |||||||||||||||||||||||||||||||
seq2  CACACCTATGGTCACTTGATCTTTGACAAGG  522

seq1: chr12_120511704_120512928
seq2: B6Ng01-042A09.g_68_1283 (reverse)

seq1  TAAGCAACAAAG--CACCTCCTGTCATTAGAAATACTTCTTCCCAAAAGC  48
      ||||||||| ||  |||||||||||||||||||  ||  ||||||| | |
seq2  TAAGCAACACAGGCCACCTCCTGTCATTAGAAAATCT--TTCCCAAGA-C  47

seq1  AATCTTTAAAGCTTACTATAATATTTAGA-TAAAA-TTCCTTTAAAGTGG  96
       |||||   ||| | |||||||| ||||| ||||| |||| |||| ||||
seq2  CATCTT---AGC-TCCTATAATA-TTAGAGTAAAATTTCCCTTAACGTGG  92

seq1  TTTGTTTTGTTTGACCATTTGGTCTTTTTAGTAGTAATTTGTATT-GCCA  145
        || |||| ||||||| |||||  |||||||||||||||||||| ||||
seq2  --TGGTTTG-TTGACCA-TTGGTTCTTTTAGTAGTAATTTGTATTGGCCA  138

seq1  TGCTTCAAAGATTGGGTATATTTCATGAGATTGCCTAAAGTTAAGTAAAC  195
      ||| |  |||||||| ||| || |||||||||||||||||| ||||||||
seq2  TGCCTTCAAGATTGGATAT-TTCCATGAGATTGCCTAAAGTAAAGTAAAC  187

seq1  TTAGT-CTGAAAACATAC-AGACTAACAACAACAACAAAGCAAACACCAA  243
       |||| ||||||||| || |||||||||||||| ||||||||||||||||
seq2  -TAGTCCTGAAAACAAACAAGACTAACAACAAC-ACAAAGCAAACACCAA  235

seq1  AATTTAAAAACTAAAGCAGCAAGACCATCCAAATAGAGATGATTTTATTT  293
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAACT-AAGCAGCAAGACCATCCAAATAGAGATGATTTTATTT  284

seq1  ATTTTCACAGCCCAGACAGGATCCTTTTCTTTTTATTTTGCCTGGATTTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAGCCCAGACAGGATCCTTTTCTTTTTATTTTGCCTGGATTTG  334

seq1  TACTGGATTTTCCTAGCTTACCTATATGGTCAGTTTATGGGAATTCCAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATTTTCCTAGCTTACCTATATGGTCAGTTTATGGGAATTCCAAC  384

seq1  AGCTTGCAAACTGCAGAAGGACATAAATACAGCAGCTATCCTTTACTGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAAACTGCAGAAGGACATAAATACAGCAGCTATCCTTTACTGGA  434

seq1  GAGGAAACAGGTAGTCTTAGCTGAGACTGACACCATTATGCCAGATCCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGGTAGTCTTAGCTGAGACTGACACCATTATGCCAGATCCCT  484

seq1  AACAATACCAAAGCAGGATTGTGGTCGCCAGTAAAGCATTTCCCATCCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACCAAAGCAGGATTGTGGTCGCCAGTAAAGCATTTCCCATCCAT  534

seq1  CTGCTAACTCCACTCACACTGTCTAAACTTCACTCACAAAAGAAAACAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACTCCACTCACACTGTCTAAACTTCACTCACAAAAGAAAACAAA  584

seq1  CAGCCCTGGGCTTTTGTGGCTCTGCTTTGCCCAGCCTCTTGTTTGCTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGGCTTTTGTGGCTCTGCTTTGCCCAGCCTCTTGTTTGCTTTT  634

seq1  GCTCCTAACCTACCCCTTTAAAATCTAGTCACTTTCTATCTTTGCTGATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAACCTACCCCTTTAAAATCTAGTCACTTTCTATCTTTGCTGATC  684

seq1  TCTAGCCTTTTTGAGGCCCTTGGCTTTCTTTTCCTTAAATCCAGGCATCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTTTTGAGGCCCTTGGCTTTCTTTTCCTTAAATCCAGGCATCT  734

seq1  TTTTGTCCATCCTGCCCTTCTGCTTTATATTTTTCAACCCTCCCCATGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCATCCTGCCCTTCTGCTTTATATTTTTCAACCCTCCCCATGCT  784

seq1  TTATTCCTGTGTCTTATTTTCTTCCCTTTTCAATATTCATCTCTTAACCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTGTGTCTTATTTTCTTCCCTTTTCAATATTCATCTCTTAACCT  834

seq1  ATTAGCTTTGCCTTAGGTTTCTTTCCCTGGTATTATCTGTCTTCATTCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTTGCCTTAGGTTTCTTTCCCTGGTATTATCTGTCTTCATTCTT  884

seq1  GTTCTCTTTATACTTTTTTTAAAAGCAGTTTGTGCCTTTTGTGTTCGCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTATACTTTTTTTAAAAGCAGTTTGTGCCTTTTGTGTTCGCTG  934

seq1  TCTTTGTTTCTCTACTCATTGTTTCTGTCTCTGTCTCTCTTTTGTTGCCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCTCTACTCATTGTTTCTGTCTCTGTCTCTCTTTTGTTGCCG  984

seq1  TGCCCCTAGTTGACTTCTTTCTCTCATATTCATTGCTATTTTATCTTGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTAGTTGACTTCTTTCTCTCATATTCATTGCTATTTTATCTTGAT  1034

seq1  TCCTTTAATTCTAGTCCCACTGGTCTTGTGCAAAAGATTATAATTGGAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATTCTAGTCCCACTGGTCTTGTGCAAAAGATTATAATTGGAAC  1084

seq1  AATTTTAAGAATTTCTTAACTGAAAATATGAGAAAGATTTGCTTTGGAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGAATTTCTTAACTGAAAATATGAGAAAGATTTGCTTTGGAAA  1134

seq1  ATAGGATCAGGCTGATGACATGGCTCAGCAGGTGAGACTCTAGCCACTAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCAGGCTGATGACATGGCTCAGCAGGTGAGACTCTAGCCACTAA  1184

seq1  ACCAAATGACCTCAATTCAATTCCCAGAATTC  1225
      ||||||||||||||||||||||||||||||||
seq2  ACCAAATGACCTCAATTCAATTCCCAGAATTC  1216