BAC Information

Click to search

BAC

Clone NameB6Ng01-042C12
Chromosome1 (Build37)6 (Build37)
Map Location 44,681,606 - 44,682,74518,836,109 - 18,836,642
singlet/doubletsingletsinglet
Overlap geneGulp1
Upstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1
Downstream geneLOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C12.bB6Ng01-042C12.g
ACCDH868612DH868613
length1,1321,003
definitionDH868612|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C12, 5' end.DH868613|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,681,606 - 44,682,745)(18,836,109 - 18,836,642)
sequence
gaattcacagtagaaaatgaaagttgtgtagtagagactgccaggttgca
cctggcactaaagtatcagcatctacatttgttttataatgaaacttaga
ttatttgaaattatttatctctaggatagtaaaagaaagagacctacagg
aaaatcatcacactgagtagagcagctctgaaaaagatgagccaatgaga
agcagggaaagttttgacatagatatcatctcaggggtcagtagaaagac
ttcctgtctgtactgtgatcatatccataattttgttcagtttagaagtt
attgtctggagataattgttttcaggattatagctgatagcatacagttc
taagagctgctgggatattttcactgtaaacaaaagagagaagtcttgtt
tacttgctctccagaaaacgtttcagaaaggaaaggaatagttcacactc
aaggttatacatgctcaagtcttacatgtatcttcctgatcatttaaaat
tcttatgtaagaatatttttatatcaaggtaatgtttcaaaatctgcaac
cttcacagcaaatatgtatgctggaattctgtaatcctgtggatcatttc
tgcttactctagctcccaaacacagaggcttatatttattagcaaatgcc
caggctttatgctagtcttgtttcccactggctcatagctcagttatttt
tttataccaatctaagctctgccacatggctagtttgttacctctcctca
gattcagacatccaacttcctccaagtctggtggggaattgctcaagtag
ccctctttccccaggttcctccctctgtccaggagtcccaccttgctgta
ctgcctttagctctaggatataggctttttattttaacaaattgggaggt
gccttagcaggcaaggaaggagagagacatatgttcacaaaatgtacaga
aacggcactacaacaagggctcctttctttccatgtccctgtagtttttt
ttatcctgctatttctatttagtaaattttactttatgtatttagataag
taagcataaattcatgaagaatagagcattggcttgttattggtgtctct
actgtgtgaaactatttcctgacacttataaa
gaattctcagtatcatgaaaacagaagttctttgaaattaaaaagagatg
aaatctattattgcttatttagtgtaaagtgatcagccttgcaattgtaa
acataaaacaaaaccagactcagcagattgtatttatagcacataagagt
aacaaggaaagtctatcaacttgagggagtgtgggttaggaaaggtaaag
gaaaggtagcagggaggggctagaataaagaaaaggagatgagaaggtga
tataattctatttcaatttaaaacattgttaaaaagataaaaactgtata
aaaaacaacaacaaaaaaaaaccaaccaaacaaacaaaaaagccctttaa
attaaaaaaaaaaaatgtatactgtataccaggaaacaaagtggcataga
acactcaacactaaacaaagacattgtgttgttaaaagttaacaatgttc
ccacttctaaggaggggcatagtgtccacacttcagtcttcatttttctt
gagtttcatgtgtttaggaaattgtatcttatatcttgggtatcctaggt
tttgggctaatatccacttatcagtgagtacatattgtgtgagttccttt
gtgaatgtgttacctcactcaggatgatgccctccaggtccatccatttg
gctaggaatttcataaattcattctttttaatagctgagtagtactccat
tgtgtagatgtaccacattttctgtatccattcctctgttgaggggcatc
tgggttctttccagcttctggctattataaataaggctgctataaacata
gtggagcatgtgtcctttcttaccagttggggcatcttctggatatatgc
ccaggagaggtatttgctggttcctccgggtagtacttatgtccaatttc
tgaggaaccgccagacagattttccagagtggtttgtacaagcctgcatc
ccaacacaatggaaggagtgttcctctttctccacatctcgcagcatctg
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_44681606_44682745
seq2: B6Ng01-042C12.b_47_1178

seq1  GAATTCACAGTAGAAAATGAAAGTTGTGTAGTAGAGACTGCCAGGTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGAAAATGAAAGTTGTGTAGTAGAGACTGCCAGGTTGCA  50

seq1  CCTGGCACTAAAGTATCAGCATCTACATTTGTTTTATAATGAAACTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACTAAAGTATCAGCATCTACATTTGTTTTATAATGAAACTTAGA  100

seq1  TTATTTGAAATTATTTATCTCTAGGATAGTAAAAGAAAGAGACCTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAATTATTTATCTCTAGGATAGTAAAAGAAAGAGACCTACAGG  150

seq1  AAAATCATCACACTGAGTAGAGCAGCTCTGAAAAAGATGAGCCAATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCACACTGAGTAGAGCAGCTCTGAAAAAGATGAGCCAATGAGA  200

seq1  AGCAGGGAAAGTTTTGACATAGATATCATCTCAGGGGTCAGTAGAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAAGTTTTGACATAGATATCATCTCAGGGGTCAGTAGAAAGAC  250

seq1  TTCCTGTCTGTACTGTGATCATATCCATAATTTTGTTCAGTTTAGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTGTACTGTGATCATATCCATAATTTTGTTCAGTTTAGAAGTT  300

seq1  ATTGTCTGGAGATAATTGTTTTCAGGATTATAGCTGATAGCATACAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGGAGATAATTGTTTTCAGGATTATAGCTGATAGCATACAGTTC  350

seq1  TAAGAGCTGCTGGGATATTTTCACTGTAAACAAAAGAGAGAAGTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGCTGGGATATTTTCACTGTAAACAAAAGAGAGAAGTCTTGTT  400

seq1  TACTTGCTCTCCAGAAAACGTTTCAGAAAGGAAAGGAATAGTTCACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTCTCCAGAAAACGTTTCAGAAAGGAAAGGAATAGTTCACACTC  450

seq1  AAGGTTATACATGCTCAAGTCTTACATGTATCTTCCTGATCATTTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATACATGCTCAAGTCTTACATGTATCTTCCTGATCATTTAAAAT  500

seq1  TCTTATGTAAGAATATTTTTATATCAAGGTAATGTTTCAAAATCTGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTAAGAATATTTTTATATCAAGGTAATGTTTCAAAATCTGCAAC  550

seq1  CTTCACAGCAAATATGTATGCTGGAATTCTGTAATCCTGTGGATCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCAAATATGTATGCTGGAATTCTGTAATCCTGTGGATCATTTC  600

seq1  TGCTTACTCTAGCTCCCAAACACAGAGGCTTATATTTATTAGCAAATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTCTAGCTCCCAAACACAGAGGCTTATATTTATTAGCAAATGCC  650

seq1  CAGGCTTTATGCTAGTCTTGTTTCCCACTGGCTCATAGCTCAGTTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTATGCTAGTCTTGTTTCCCACTGGCTCATAGCTCAGTTATTTT  700

seq1  TTTATACCAATCTAAGCTCTGCCACATGGCTAGTTTGTTACCTCTCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAATCTAAGCTCTGCCACATGGCTAGTTTGTTACCTCTCCTCA  750

seq1  GATTCAGACATCCAACTTCCTCCAAGTCTGGTGGGGAATTGCTCAAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGACATCCAACTTCCTCCAAGTCTGGTGGGGAATTGCTCAAGTAG  800

seq1  CCCTCTTTCCCCAGGTTCCTCCCTCTGTCCAGGAGTCCCACCTTGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCCCCAGGTTCCTCCCTCTGTCCAGGAGTCCCACCTTGCTGTA  850

seq1  CTGCCTTTAGCTCTAGGATATAGGCTTTTTATTTTAACAAATTGGGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTAGCTCTAGGATATAGGCTTTTTATTTTAACAAATTGGGAGGT  900

seq1  GCCTTAGGCAGGCAAGGAAGGAGAGAGACATATGTTCACAAAATGTACAG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTA-GCAGGCAAGGAAGGAGAGAGACATATGTTCACAAAATGTACAG  949

seq1  AAACGGCACTACAACAAGGGGCTCCTTTTCTTTTCCATGTCCCTGTAGTT  1000
      ||||||||||||||||| ||||||||||   |||||||||||||||||||
seq2  AAACGGCACTACAACAA-GGGCTCCTTT--CTTTCCATGTCCCTGTAGTT  996

seq1  TTTTTTATCCTGCCTTATTTCTATTTAGTTAAATTTTACTTTATGTATTT  1050
      |||||||||||||  ||||||||||||| |||||||||||||||||||||
seq2  TTTTTTATCCTGC--TATTTCTATTTAG-TAAATTTTACTTTATGTATTT  1043

seq1  AGATAAAGTAAGCATAAATTCATGAAG-ATAGAGCATTTGCCTTGTTTAT  1099
      |||| |||||||||||||||||||||| |||||||| ||| ||||||  |
seq2  AGAT-AAGTAAGCATAAATTCATGAAGAATAGAGCA-TTGGCTTGTTATT  1091

seq1  TGTGTCTCTACTGTGTGAAACTA-TCCCTGACACTTAATAAA  1140
       |||||||||||||||||||||| | |||||||||| |||||
seq2  GGTGTCTCTACTGTGTGAAACTATTTCCTGACACTT-ATAAA  1132

seq1: chr6_18836109_18836642
seq2: B6Ng01-042C12.g_533_1068 (reverse)

seq1  CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC-TCCATTGT  49
      ||||||||||| |||  |||||||||||||||||||||||| ||||||| 
seq2  CAGCAGATGCT-GCG-AGATGTGGAGAAAGAGGAACACTCCTTCCATTG-  47

seq1  TGGTGGGATTGCAGGCTTGTAC-AACCACTCTGG-AAATCCGTCTGGCGG  97
      || ||||| ||||||||||||| ||||||||||| ||||| |||||||||
seq2  TGTTGGGA-TGCAGGCTTGTACAAACCACTCTGGAAAATCTGTCTGGCGG  96

seq1  TTGCTCAGAAAATTGGACAT-AGTACTA-CTGGAGGATCCAGC-ATTACC  144
      || ||||| ||||||||||| ||||||| | |||||| ||||| | ||||
seq2  TTCCTCAG-AAATTGGACATAAGTACTACCCGGAGGAACCAGCAAATACC  145

seq1  TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG-AAGGACACA  193
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAAGGACACA  195

seq1  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTATGTTTATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  245

seq1  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  295

seq1  TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  343
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  345

seq1  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  395

seq1  ACATTCACAAAGGAACTCACACAATATGTACTCACTGCTAATTGGATATT  443
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATT  445

seq1  AGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACA  493
      ||||| |||||||||||||||||||||||||||| ||||| |||||||||
seq2  AGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACA  495

seq1  TGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG  534
      ||||||||||||| |||||||||||||||||||||||||||
seq2  TGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATG  536