BAC Information

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BAC

Clone NameB6Ng01-042D03
Chromosome1 (Build37)
Map Location 196,037,898 - 196,141,073
singlet/doubletdoublet
Overlap genenone
Upstream geneHsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D03.bB6Ng01-042D03.g
ACCDH868641DH868642
length1,1611,142
definitionDH868641|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D03, 5' end.DH868642|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,037,898 - 196,039,063)(196,139,932 - 196,141,073)
sequence
gaattccagtaaagaagaggcataagagagaacagtatgtcagttgacct
ttagagaccttctttagatttccaaccaataactcaatcatctttcacac
ataaatgatagatcaagctaaaataatagtagtttagtagccaagaatgt
ccttcacctgtctataaaccaaaagtcttggtaaagtttccttcagtgaa
aggggatttatagttccaactttatcaattgttttttaattaaaaatgta
ttgaggttcttgagagtggagcacataaactagctatgccaatgcttggc
acagacagcccagtgtgtgtataaattacatccagggtgactgagtctgg
ctggacgatagagtatactgagttactttgtctctgagtcagaactacag
aaaaataatgcttaaaatattcaaaacatccatctcaggtccctaaaaga
acaaattttcttccttcctgggacttctcctttaatggtttcagatactg
actttatttgccataaaatggcttgactttaatcactaaggcaatactag
aaacttgaccaaggtgcctttagtgactcatacttaggccaaagttagga
acctggctgcaatgtcttcattttcttgatgacctgaaaaaaaagccaag
atgaccattaattaatttgagtctttgaaggatggagcccagtgatatct
atgttcttgtctttcatccatcaattcactgtcatcagcatcaacaggat
aatcacagtgccagaagctaaagatagaactgagcatgagggtttagctc
ttggtagaaaggaagagtaggtgcccaggcagaaaaccgaacaagtatgc
attaaaaaaaccaaagacaatttatgtcaatctccttttgttctcatttg
taaaatgtgttgaggagatgagagatgtttgctttttgcctggtacagaa
ctgatctggtgagtctgtatacaaacggagcagcatagtaggaaagagaa
gctgccttttttgtctctgtagcagtattggaaactgccaacctgggaac
aaaagcaagtaggtagaaagtcctctttgttttagaggaacattctgggc
actggccctggagcgaatgagctcatgcagtggaaggtacttattctgga
gtcatcatggc
gaattctaggctgatctcagaatggaacatctttctgcccaagaaccatt
gctatgtggctgaatgtacttgtattttattgggagataatctgatgata
tcaagaacaaacccttctcccattttccaggcctttaccaaggctttccc
tcccattgggcccccaagaaagttatttccttgttgttctttaatcacca
gtatttctaggtaggttaagtatatggttaatgtgaaagatacacttggt
ctccttgcccaaaaccgttaggccaggaaaggaagagcagcttgatgaag
ttgctgtggagttccttcgggctttgaacaaattgctctaatatgagaag
ccaccagtctgcttcccagtgtcattaaggagccccatgtgaaggaagga
tattagttttcacttagagagcgaagggcaccaacaactgaggagagaaa
gactgcaatatggttaatggggcaatttggtgacccaattgggagcccag
acacttcgcctcctgccaagctctagcaaatttgtatgatacagaaacag
agcaggatgaatagatcaatgcatttgttcattctattaaggaggaaagg
gaaaggcatagtttgggtttctttctatcaaaaccaatttcttcacctta
caggcatgagggttgcatcgcaccatcttttgttcagagagctggaaagg
ttcccagctgggaaaggtcgagttttatgtaacgaaatttgaaccaataa
tcagcctttcacctcagagacgtctgttgtattaaaaacttaataaatat
taattacatgttaaggctagtctcgtttcattttacagattgctctctct
ctctctttttttaaagtctgcaaaaagagaaccatttttttttttctttt
tttaagaagtcttgtagtatgacttatgcttttcaatatattgggtgttt
tctttttagtccgaggttacaacaaaaattcactattattttattttgaa
ctgaaatggcttctttttactatggagaatgaatgaaggcatgctgaagg
aaaagcaaagaattgaatttcagcctaagtcagtaatcttctcttgcctg
gagggcaaagccctaacatctaatacggtgcatctttacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196037898_196039063
seq2: B6Ng01-042D03.b_46_1206

seq1  GAATTCCAGTAAAGAAGAGGCATAAGAGAGAACAGTATGTCAGTTGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAAGAAGAGGCATAAGAGAGAACAGTATGTCAGTTGACCT  50

seq1  TTAGAGACCTTCTTTAGATTTCCAACCAATAACTCAATCATCTTTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACCTTCTTTAGATTTCCAACCAATAACTCAATCATCTTTCACAC  100

seq1  ATAAATGATAGATCAAGCTAAAATAATAGTAGTTTAGTAGCCAAGAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATAGATCAAGCTAAAATAATAGTAGTTTAGTAGCCAAGAATGT  150

seq1  CCTTCACCTGTCTATAAACCAAAAGTCTTGGTAAAGTTTCCTTCAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTGTCTATAAACCAAAAGTCTTGGTAAAGTTTCCTTCAGTGAA  200

seq1  AGGGGATTTATAGTTCCAACTTTATCAATTGTTTTTTAATTAAAAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTATAGTTCCAACTTTATCAATTGTTTTTTAATTAAAAATGTA  250

seq1  TTGAGGTTCTTGAGAGTGGAGCACATAAACTAGCTATGCCAATGCTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTCTTGAGAGTGGAGCACATAAACTAGCTATGCCAATGCTTGGC  300

seq1  ACAGACAGCCCAGTGTGTGTATAAATTACATCCAGGGTGACTGAGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGCCCAGTGTGTGTATAAATTACATCCAGGGTGACTGAGTCTGG  350

seq1  CTGGACGATAGAGTATACTGAGTTACTTTGTCTCTGAGTCAGAACTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGATAGAGTATACTGAGTTACTTTGTCTCTGAGTCAGAACTACAG  400

seq1  AAAAATAATGCTTAAAATATTCAAAACATCCATCTCAGGTCCCTAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGCTTAAAATATTCAAAACATCCATCTCAGGTCCCTAAAAGA  450

seq1  ACAAATTTTCTTCCTTCCTGGGACTTCTCCTTTAATGGTTTCAGATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTCTTCCTTCCTGGGACTTCTCCTTTAATGGTTTCAGATACTG  500

seq1  ACTTTATTTGCCATAAAATGGCTTGACTTTAATCACTAAGGCAATACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTGCCATAAAATGGCTTGACTTTAATCACTAAGGCAATACTAG  550

seq1  AAACTTGACCAAGGTGCCTTTAGTGACTCATACTTAGGCCAAAGTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGACCAAGGTGCCTTTAGTGACTCATACTTAGGCCAAAGTTAGGA  600

seq1  ACCTGGCTGCAATGTCTTCATTTTCTTGATGACCTGAAAAAAAAGCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTGCAATGTCTTCATTTTCTTGATGACCTGAAAAAAAAGCCAAG  650

seq1  ATGACCATTAATTAATTTGAGTCTTTGAAGGATGGAGCCCAGTGATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATTAATTAATTTGAGTCTTTGAAGGATGGAGCCCAGTGATATCT  700

seq1  ATGTTCTTGTCTTTCATCCATCAATTCACTGTCATCAGCATCAACAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGTCTTTCATCCATCAATTCACTGTCATCAGCATCAACAGGAT  750

seq1  AATCACAGTGCCAGAAGCTAAAGATAGAACTGAGCATGAGGGTTTAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTGCCAGAAGCTAAAGATAGAACTGAGCATGAGGGTTTAGCTC  800

seq1  TTGGTAGAAAGGAAGAGTAGGTGCCCAGGCAGAAAACCGAACAAGTATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAAAGGAAGAGTAGGTGCCCAGGCAGAAAACCGAACAAGTATGC  850

seq1  ATTAAAAAAACCAAAGACAATTTATGTCAATCTCCTTTTGTTCTCATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAACCAAAGACAATTTATGTCAATCTCCTTTTGTTCTCATTTG  900

seq1  TAAAATGTGTTGAGGAGATGAGAGATGTTTGCTTTTTGCCTGGTACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGTTGAGGAGATGAGAGATGTTTGCTTTTTGCCTGGTACAGAA  950

seq1  CTGATCTGGTGAGTCTGTATACAAACGGAGCAGCATAGTAGGAAAGGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGATCTGGTGAGTCTGTATACAAACGGAGCAGCATAGTAGGAAA-GAGA  999

seq1  AGCTGCC-TTTCTGTCTCCTGTAGCAGTATTGGAAACTGCCAACCT-GGA  1048
      ||||||| ||| ||||| |||||||||||||||||||||||||||| |||
seq2  AGCTGCCTTTTTTGTCT-CTGTAGCAGTATTGGAAACTGCCAACCTGGGA  1048

seq1  ACAAAAGCAGGTAGGTAGAAAGGCCCTCTTTGATGTTAGA-GAACATTCT  1097
      ||||||||| ||||||||||| | |||||||| | ||||| |||||||||
seq2  ACAAAAGCAAGTAGGTAGAAA-GTCCTCTTTG-TTTTAGAGGAACATTCT  1096

seq1  GGGCACTGGGCCCTGGAGCAGATGAGCTCATGCAGTGGAAGGTACTATAT  1147
      ||||||| |||||||||||  ||||||||||||||||||||||||| |||
seq2  GGGCACT-GGCCCTGGAGCGAATGAGCTCATGCAGTGGAAGGTACT-TAT  1144

seq1  TCTGGAAGTCATTCATGGC  1166
      ||||| ||||| |||||||
seq2  TCTGG-AGTCA-TCATGGC  1161

seq1: chr1_196139932_196141073
seq2: B6Ng01-042D03.g_68_1209 (reverse)

seq1  GAGGTGAAAGATGCAACAGTAATTAGGATG-TAGGGCTATGCCCCTCAGG  49
      ||||| |||||||| || || |||| |||| ||||||| |||||  ||||
seq2  GAGGT-AAAGATGC-ACCGT-ATTA-GATGTTAGGGCTTTGCCCTCCAGG  46

seq1  CAATGAAAGAAGA-TACTGACTCTAGGCTG-AATTCCATTCTCTGCTTTT  97
      ||   | |||||| |||||||| ||||||| ||||| ||||| |||||||
seq2  CA---AGAGAAGATTACTGACT-TAGGCTGAAATTCAATTCTTTGCTTTT  92

seq1  CCTTCAGCCTGCCTTCATTCATTCTCCATAGTAAAAAGAAGCCAATTCAG  147
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CCTTCAGCATGCCTTCATTCATTCTCCATAGTAAAAAGAAGCCATTTCAG  142

seq1  TTCAAAATAAAAT-ATAGTTGAATTTTGTTGTAACCTCAGAACTAAAAAG  196
      ||||||||||||| |||||  | ||||||||||||||| | |||||||||
seq2  TTCAAAATAAAATAATAGTGAATTTTTGTTGTAACCTC-GGACTAAAAAG  191

seq1  AAAACACACAATATATTG-AAAGC-TAAGTCATACTACAGGACTTCTTAG  244
      ||||||| |||||||||| ||||| |||||||||||||| ||||||||| 
seq2  AAAACACCCAATATATTGAAAAGCATAAGTCATACTACAAGACTTCTTAA  241

seq1  AAA---AGAAAAAAAAATGGTTCTCTTTTTGCAGACTTTAAAAAAAGAGA  291
      |||   | ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAAAAATGGTTCTCTTTTTGCAGACTTTAAAAAAAGAGA  291

seq1  GAGAGAGAGCAATCTGTAAAATGAAACGAGACTAGCCTTAACATGTAATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGCAATCTGTAAAATGAAACGAGACTAGCCTTAACATGTAATT  341

seq1  AATATTTATTAAGTTTTTAATACAACAGACGTCTCTGAGGTGAAAGGCTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTAAGTTTTTAATACAACAGACGTCTCTGAGGTGAAAGGCTG  391

seq1  ATTATTGGTTCAAATTTCGTTACATAAAACTCGACCTTTCCCAGCTGGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGTTCAAATTTCGTTACATAAAACTCGACCTTTCCCAGCTGGGA  441

seq1  ACCTTTCCAGCTCTCTGAACAAAAGATGGTGCGATGCAACCCTCATGCCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCAGCTCTCTGAACAAAAGATGGTGCGATGCAACCCTCATGCCT  491

seq1  GTAAGGTGAAGAAATTGGTTTTGATAGAAAGAAACCCAAACTATGCCTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTGAAGAAATTGGTTTTGATAGAAAGAAACCCAAACTATGCCTTT  541

seq1  CCCTTTCCTCCTTAATAGAATGAACAAATGCATTGATCTATTCATCCTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTCCTTAATAGAATGAACAAATGCATTGATCTATTCATCCTGC  591

seq1  TCTGTTTCTGTATCATACAAATTTGCTAGAGCTTGGCAGGAGGCGAAGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGTATCATACAAATTTGCTAGAGCTTGGCAGGAGGCGAAGTG  641

seq1  TCTGGGCTCCCAATTGGGTCACCAAATTGCCCCATTAACCATATTGCAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCCCAATTGGGTCACCAAATTGCCCCATTAACCATATTGCAGT  691

seq1  CTTTCTCTCCTCAGTTGTTGGTGCCCTTCGCTCTCTAAGTGAAAACTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCTCAGTTGTTGGTGCCCTTCGCTCTCTAAGTGAAAACTAAT  741

seq1  ATCCTTCCTTCACATGGGGCTCCTTAATGACACTGGGAAGCAGACTGGTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTTCACATGGGGCTCCTTAATGACACTGGGAAGCAGACTGGTG  791

seq1  GCTTCTCATATTAGAGCAATTTGTTCAAAGCCCGAAGGAACTCCACAGCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATATTAGAGCAATTTGTTCAAAGCCCGAAGGAACTCCACAGCA  841

seq1  ACTTCATCAAGCTGCTCTTCCTTTCCTGGCCTAACGGTTTTGGGCAAGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAAGCTGCTCTTCCTTTCCTGGCCTAACGGTTTTGGGCAAGGA  891

seq1  GACCAAGTGTATCTTTCACATTAACCATATACTTAACCTACCTAGAAATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTGTATCTTTCACATTAACCATATACTTAACCTACCTAGAAATA  941

seq1  CTGGTGATTAAAGAACAACAAGGAAATAACTTTCTTGGGGGCCCAATGGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATTAAAGAACAACAAGGAAATAACTTTCTTGGGGGCCCAATGGG  991

seq1  AGGGAAAGCCTTGGTAAAGGCCTGGAAAATGGGAGAAGGGTTTGTTCTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCCTTGGTAAAGGCCTGGAAAATGGGAGAAGGGTTTGTTCTTG  1041

seq1  ATATCATCAGATTATCTCCCAATAAAATACAAGTACATTCAGCCACATAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCAGATTATCTCCCAATAAAATACAAGTACATTCAGCCACATAG  1091

seq1  CAATGGTTCTTGGGCAGAAAGATGTTCCATTCTGAGATCAGCCTAGAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTCTTGGGCAGAAAGATGTTCCATTCTGAGATCAGCCTAGAATT  1141

seq1  C  1142
      |
seq2  C  1142