BAC Information

Click to search

BAC

Clone NameB6Ng01-042E03
Chromosome1 (Build37)
Map Location 166,253,828 - 166,349,990
singlet/doubletdoublet
Overlap geneNme7
Upstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1
Downstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E03.bB6Ng01-042E03.g
ACCDH868687DH868688
length940784
definitionDH868687|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E03, 5' end.DH868688|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,348,984 - 166,349,990)(166,253,828 - 166,254,615)
sequence
gaattccactgtgctgctaagttgggaatagatcctcaaaaataataaaa
tgcaatactgttgccgaccagcgtatgacaatctctgtggcttttgtcta
gactttacgactgaagtgtgcagagcagaagtctttttaaccaggctgtt
ggacctaatctctaagtacataagggaaaaacgctcgccagtacagcact
atagctcctgcatttctaaaattctaactgcttgaacaaggaagaatatt
tactcatccccttggaatgcaatcagtcataagatcactaccagtgaaat
gcgtatcacttgagttgccatcattcccaaacgacgagtgaaaaccttca
tactgaaccatggatagaaaactattcttttccttatttcctgttggtta
taaatctatgtttgccttaaaattttgtatacttgtttagatgactcttg
aatgtcagaggttcaattttttaaatattgggtttaattagaaacatcct
tgaactgaactaagatgggtgtcaatgtttcagtatgactctctgtggtc
cagtcattatgcagtgcaggaaattcgacaaactggtacttggttccatt
accactggattaaaaactccagtgtttgagtcacaagcattccaagggtt
tattactcagatacatgtggaaatctgatttgtaaagaaaaggtatgtta
ttactattcgtacccttttaccttagtgtaggaattgcccctagaacttg
ggtccaatgcccaacgctgggtgtggtacgcaccacctttaatctcagac
tccaagcgaaacggtgagctctaaacttaggacctgctgtaaaaattcag
ctgcctgtaagctgtcctattaccgaattccaaaagatctttttttttgt
ttaacgcttagagagaaaattttggaaaaataaaaaaaat
gaattctgtgccagtaaatgcttcaagatgaaataaagacatttccaaac
atccactgtagttttgaactcacattgctacaccttgctacttattgttt
gtattaaatttctctttctctctctgcctcccccccccgtctctttttct
tctctctctctctctctctctctccccctctctctctctctctctctggt
atgcttttctatcccatgaactgagtttcacttactggcttcatagaatt
tggtatcaaacttagccagtgatgaatttcgtaaagactttttaaattaa
aaactatgtcctttaactatattcatccccccctttgccttctcactctt
tctgtttccaaatagttccctttctaccttgatggagagagagagggagg
gagagggaaaagaagagggaggatatctaagttccacatacaaaagaaaa
aaaatgcaatgtttgtctttctggttctggcttgttttcgattatgtaaa
ggcatccattctaacttaacaaaaaacatatttttactcttcgctgtggt
tgaataaaatagcatgtgtattcacacttccttttgttattgacttcttt
gttgagggacactatacggatctacctcttggcgcttgtctaggtgccac
tgaaacccggaaggtcgaggactttaattagtttatttgcttgttttttg
tttgtttttctgaggaagggtgtgattgctggccttcgctgacttggaac
ttgctatgtatacaaaacttccttctagcccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166348984_166349990
seq2: B6Ng01-042E03.b_45_984 (reverse)

seq1  ATTTTTTATTCATTTATTTTTCCAATAAAATTTTCTTACTTACTTAATGA  50
      ||||||      |||||||||||   ||||||||||  || |        
seq2  ATTTTT------TTTATTTTTCC---AAAATTTTCTCTCTAA-------G  34

seq1  CGTTGAAAATCCAGAAAACAAAGTACTTCTTTTCTTTGTATATTTTCTGT  100
      |||| || |     |||| ||||  ||       |||| |    ||| ||
seq2  CGTTAAACA-----AAAAAAAAGATCT-------TTTGGA---ATTCGGT  69

seq1  TATTATTTGCAACAAGGCCTTACCATGCAGCCCTGAACTTACTCTACAGA  150
       ||        |  |   |||| || ||||  ||||| |   | ||||| 
seq2  AAT--------AGGACAGCTTA-CAGGCAG--CTGAATT---TTTACAG-  104

seq1  CCAGGCTGCCTCAAGTTTTTAGAGCTCCACCTGCTTCTGCCTCTGAGTGC  200
       ||||   ||| |||  ||||||||| |||| | |||   ||  |||| |
seq2  -CAGG--TCCT-AAG--TTTAGAGCT-CACC-GTTTC--GCTTGGAGT-C  143

seq1  TGAGATTAAAGGTGTGTGCGTGACCACACCCAGCGCTTAGAGCATTTGAA  250
      |||||||||||||| |||||| |||||||||||||  | | ||| ||| |
seq2  TGAGATTAAAGGTG-GTGCGT-ACCACACCCAGCG--TTGGGCA-TTGGA  188

seq1  CTCAAGTTCTATGGGGCAAATCCCTACACTAAGGTAATAGGGTTACTGAT  300
      | ||||||||| ||||| ||| ||||||||||||||| |||| ||| || 
seq2  CCCAAGTTCTA-GGGGC-AATTCCTACACTAAGGTAAAAGGG-TAC-GAA  234

seq1  TAGTAATTAACATACATTCTCTTTACTAATCAGATTTCCACATGATATCT  350
      |||||| |||||||| || ||||||| ||||||||||||||||| |||||
seq2  TAGTAA-TAACATACCTTTTCTTTACAAATCAGATTTCCACATG-TATCT  282

seq1  GAGTAATAAACCCTTGGAATGCTTGTGACTCAAACACTGGAGTTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAAACCCTTGGAATGCTTGTGACTCAAACACTGGAGTTTTTAAT  332

seq1  CCAGTGGTAATGGAACCAAGTAACAGTTTGTCGAATTTCCTGCACTGCAT  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAGTGGTAATGGAACCAAGTACCAGTTTGTCGAATTTCCTGCACTGCAT  382

seq1  AATGACTGGACCACAGAGAGTCATACTG-AACATTGACACCAATCTTAGT  499
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  AATGACTGGACCACAGAGAGTCATACTGAAACATTGACACCCATCTTAGT  432

seq1  TCAGTTCAAGGATGTTTCTAATTAAACCCAATATTTAAAAAATTGAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAAGGATGTTTCTAATTAAACCCAATATTTAAAAAATTGAACCT  482

seq1  CTGACATTCAAGAGTCATCTAAACAAGTATACAAAATTTTAAGGCAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCAAGAGTCATCTAAACAAGTATACAAAATTTTAAGGCAAACA  532

seq1  TAGATTTATAACCAACAGGAAATAAGGAAAAGAATAGTTTTCTATCCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTATAACCAACAGGAAATAAGGAAAAGAATAGTTTTCTATCCATG  582

seq1  GTTCAGTATGAAGGTTTTCACTCGTCGTTTGGGAATGATGGCAACTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTATGAAGGTTTTCACTCGTCGTTTGGGAATGATGGCAACTCAAG  632

seq1  TGATACGCATTTCACTGGTAGTGATCTTATGACTGATTGCATTCCAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACGCATTTCACTGGTAGTGATCTTATGACTGATTGCATTCCAAGGG  682

seq1  GATGAGTAAATATTCTTCCTTGTTCAAGCAGTTAGAATTTTAGAAATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTAAATATTCTTCCTTGTTCAAGCAGTTAGAATTTTAGAAATGCA  732

seq1  GGAGCTATAGTGCTGTACTGGCGAGCGTTTTTCCCTTATGTACTTAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATAGTGCTGTACTGGCGAGCGTTTTTCCCTTATGTACTTAGAGA  782

seq1  TTAGGTCCAACAGCCTGGTTAAAAAGACTTCTGCTCTGCACACTTCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCAACAGCCTGGTTAAAAAGACTTCTGCTCTGCACACTTCAGTC  832

seq1  GTAAAGTCTAGACAAAAGCCACAGAGATTGTCATACGCTGGTCGGCAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCTAGACAAAAGCCACAGAGATTGTCATACGCTGGTCGGCAACA  882

seq1  GTATTGCATTTTATTATTTTTGAGGATCTATTCCCAACTTAGCAGCACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCATTTTATTATTTTTGAGGATCTATTCCCAACTTAGCAGCACAG  932

seq1  TGGAATTC  1007
      ||||||||
seq2  TGGAATTC  940

seq1: chr1_166253828_166254615
seq2: B6Ng01-042E03.g_64_847

seq1  GAATTCTGTGCCAGTAAATGCTTCAAGATGAAATAAAGACATTTCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCAGTAAATGCTTCAAGATGAAATAAAGACATTTCCAAAC  50

seq1  ATCCACTGTAGTTTTGAACTCACATTGCTACACCTTGCTACTTATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGTAGTTTTGAACTCACATTGCTACACCTTGCTACTTATTGTTT  100

seq1  GTATTAAATTTCTCTTTCTCTCTCTGCCTCCCCCCCCCGTCTCTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAATTTCTCTTTCTCTCTCTGCCTCCCCCCCCCGTCTCTTTTTCT  150

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTGGT  200

seq1  ATGCTTTTCTATCCCATGAACTGAGTTTCACTTACTGGCTTCATAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCTATCCCATGAACTGAGTTTCACTTACTGGCTTCATAGAATT  250

seq1  TGGTATCAAACTTAGCCAGTGATGAATTTCGTAAAGACTTTTTAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAAACTTAGCCAGTGATGAATTTCGTAAAGACTTTTTAAATTAA  300

seq1  AAACTATGTCCTTTAACTATATTCATCCCCCCCTTTGCCTTCTCACTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGTCCTTTAACTATATTCATCCCCCCCTTTGCCTTCTCACTCTT  350

seq1  TCTGTTTCCAAATAGTTCCCTTTCTACCTTGATGGAGAGAGAGAGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCAAATAGTTCCCTTTCTACCTTGATGGAGAGAGAGAGGGAGG  400

seq1  GAGAGGGAAAAGAAGAGGGAGGATATCTAAGTTCCACATACAAAAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAAAGAAGAGGGAGGATATCTAAGTTCCACATACAAAAGAAAA  450

seq1  AAAATGCAATGTTTGTCTTTCTGGTTCTGGCTTGTTTTCCATTATGTGAA  500
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  AAAATGCAATGTTTGTCTTTCTGGTTCTGGCTTGTTTTCGATTATGTAAA  500

seq1  GGCCTCCAGTCTAACTTACCAAACAACATATTTTTACTCTTCTCTGTGGT  550
      ||| |||| ||||||||| |||| |||||||||||||||||| |||||||
seq2  GGCATCCATTCTAACTTAACAAAAAACATATTTTTACTCTTCGCTGTGGT  550

seq1  TGAATAAAACTTCATGTGTATTCATACTTCCTTTTGTTTATTGACTTCTT  600
      |||||||||   |||||||||||| ||||||||||| |||||||||||||
seq2  TGAATAAAATAGCATGTGTATTCACACTTCCTTTTG-TTATTGACTTCTT  599

seq1  TGTTGAGGGACACTAGACTGATCTACCTCTTGGCGCTTGTCAATGGTGCC  650
      ||||||||||||||| || |||||||||||||||||||||| | ||||||
seq2  TGTTGAGGGACACTATACGGATCTACCTCTTGGCGCTTGTCTA-GGTGCC  648

seq1  ACAATAAACACGGATGGTCGTGGACTTTCATTTGTTTGTTTACTTGTTTT  700
      ||   |||| |||| ||||| ||||||| ||| |||| ||| ||||||||
seq2  AC-TGAAACCCGGAAGGTCGAGGACTTTAATTAGTTTATTTGCTTGTTTT  697

seq1  TTGTTTGGTTTTCTGAGGCAAGGTGTGATTGCATGGCCTTGGCTGACTTG  750
      ||||||| |||||||||| | ||||||||||| ||||||| |||||||||
seq2  TTGTTTGTTTTTCTGAGGAAGGGTGTGATTGC-TGGCCTTCGCTGACTTG  746

seq1  GAGCTTGCTATGTAGACAAAGCTACCTTCTAACCCACA  788
      || ||||||||||| ||||| || ||||||| ||||||
seq2  GAACTTGCTATGTATACAAAACTTCCTTCTAGCCCACA  784