BAC Information

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BAC

Clone NameB6Ng01-042E09
Chromosome1 (Build37)
Map Location 81,599,553 - 81,711,547
singlet/doubletdoublet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E09.bB6Ng01-042E09.g
ACCDH868699DH868700
length1,1371,199
definitionDH868699|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E09, 5' end.DH868700|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,710,407 - 81,711,547)(81,599,553 - 81,600,737)
sequence
gaattctttataaattgggctacctatacataaataaatgagaattttct
gaataaagcctaacctatgaattgtcttaaacttcaaaatgtgaaaagga
aagaaaaatggtgtaagaataacaataaaattaagtatttaaaaggagaa
acactatttaatagaccatagagagaataacttaggaaaattttgcaatt
gtcataaaaatttattgcttacaaaaatatataagtaaaaagaatatcta
gtaggcagacatacaatgttcccatgggtatgagcagcatctgctgtgat
gatgaactcgaatgggctgtaggctgcaggaattaatcccagggaaaaca
atgaaactaactcataggatgcatgggtcaggcaaaaataacaaatagga
taatctaagttttgaagaagtgtattgtttgcgtgtgaagggcctcagtg
tgttatagccaggttcacaagaaaagagcaacggcctcacagggaggagc
tggggaagagttttgagttacacttctacccttgcatgtactatctttac
acaatcatactctccacattggctatgaacagtgtcaaggcagcccaagc
caccatggactgtgtgtttactgttaggcaggggtctgaacagctagcac
cctagggtactctcttcttctaaccttttctcccagattctctaggtcag
attgataaattaagttatagtcctctgataaaagaaagaaatatttgaat
attgataacatggaattaaatgaataggacaggaagatggagactgggca
taaatttccatatatctatattctctatctgatgttaagagtgaaaattg
taatacttagagaacacagtagatagaaaggatacaagaaagatacgata
aaagaaaaaaatccttgtcattggcaagaaagaaagtaatattgagaatt
ctcataaaggacagaaaataatgaaaataaaataaatgaactagtataaa
tgtagaatgatcctacatatactactaggcatctcaaaaggagggaagaa
cagaaaattactttattatggagctcattttccaaattttagaaaaggat
atacacactcttccacatgccaccaccacagagacac
gaattcatttcttcctgctcttgactatggacacaaattgttgctacctt
gactttccagtgatacactgtaacctgaaattgggaggaaaaagaaaacc
aaatacattaatatttccttcatagtcatgtctgttctttgaaatttgat
catttcactcttcagtatttgactttgtacactgtggccaacatacatga
tggtgtggctcctcaaatttagacccaggatgaaggcagcataggagaga
aggattagaaaggctgcatcagaaatagcaaactgtcgatgcaaaaacct
aagtaaataattattagcaaccatgttgtcaatcgtaaggtcatttttat
ttcataaatacaggatattttctttttaagttaatacatttgaaatgtca
tctacacattaaagtctactgaataaaagtgagtgcccagagatctttgg
tacacgtaaaaatggcatttagcaatcaagactatctgtataaaatggaa
atgtatgacagtcaaaatcactctaagtatatgtccaagaataacatata
tttgcaggaagagatcttgaattcctggtcataagaagttgttgctaaga
tatggatagaaactgttgaccaaagaaattatactgtaaagacagagcaa
taggcaggttcaaagggaaagtatcattcttagtaatgattcagttttaa
tccccccccgttgtaccaaatctacacacacatacaaacacacacacaca
tacacacacacacacacacacacacacacacacacacacacaggaatgag
cataaaagaaatagaaatgtaaagacttgctgtaaacttggtaattttat
cttaagttcaaggttaatttgaaacacaaaatcatggaaatatttgttaa
ctgtctcttaaagaatataaacttctcttttactcgactgtcgttgataa
agtaactaaatacaaaatgattgctcttaaggtttgatatattgatttca
tggaggaatgtatagtcttcattaaaagtaatcaccattagtattgcagt
tgtgaagaaaattcttagaactgttttctgttattggggcagaataacct
ggagactagatacacttaccagataagggttttatgtaacttatatgtct
ctgagaggctgggaatccaagggctagccaaggattggggggaggttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81710407_81711547
seq2: B6Ng01-042E09.b_43_1179 (reverse)

seq1  GTGTCTCTGT-GTGTGTGCATGTGTGTAGAGTGTGTATA--CCTTTCTAA  47
      |||||||||| |||   ||||||| | ||||||||||||  | |||||||
seq2  GTGTCTCTGTGGTGGTGGCATGTG-GAAGAGTGTGTATATCCTTTTCTAA  49

seq1  ATATTTGGAAATGAAGCTCCATTAATAAAGTAATTTTCTGTTCTTCCCTC  97
      | |||||||||   ||||||| ||||||||||||||||||||||||||||
seq2  A-ATTTGGAAAATGAGCTCCA-TAATAAAGTAATTTTCTGTTCTTCCCTC  97

seq1  CTTTTTGAGATGCCTAGTAGTATATGTA-GATCATTCTACATTTTATACT  146
      | |||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  C-TTTTGAGATGCCTAGTAGTATATGTAGGATCATTCTACA-TTTATACT  145

seq1  AGTTCATTTATTTTATTTTCATTATTTTCTGTTCCTTTATGAGAATTCTC  196
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTCATTTATTTTATTTTCATTATTTTCTG-TCCTTTATGAGAATTCTC  194

seq1  AATATTACTTTCTTTCTTGCCAATGACAAGGATTTTTTTTCTTTTATTCG  246
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AATATTACTTTCTTTCTTGCCAATGACAAGGA-TTTTTTTCTTTTA-TCG  242

seq1  TATCTTTCTTGTATCCTTTCTATCTACTGTGTTCTCTAAGTATTACAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTTGTATCCTTTCTATCTACTGTGTTCTCTAAGTATTACAATT  292

seq1  TTCACTCTTAACATCAGATAGAGAATATAGATATATGGAAATTTATGCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTTAACATCAGATAGAGAATATAGATATATGGAAATTTATGCCC  342

seq1  AGTCTCCATCTTCCTGTCCTATTCATTTAATTCCATGTTATCAATATTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATCTTCCTGTCCTATTCATTTAATTCCATGTTATCAATATTCA  392

seq1  AATATTTCTTTCTTTTATCAGAGGACTATAACTTAATTTATCAATCTGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTTCTTTTATCAGAGGACTATAACTTAATTTATCAATCTGAC  442

seq1  CTAGAGAATCTGGGAGAAAAGGTTAGAAGAAGAGAGTACCCTAGGGTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAATCTGGGAGAAAAGGTTAGAAGAAGAGAGTACCCTAGGGTGCT  492

seq1  AGCTGTTCAGACCCCTGCCTAACAGTAAACACACAGTCCATGGTGGCTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCAGACCCCTGCCTAACAGTAAACACACAGTCCATGGTGGCTTG  542

seq1  GGCTGCCTTGACACTGTTCATAGCCAATGTGGAGAGTATGATTGTGTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTTGACACTGTTCATAGCCAATGTGGAGAGTATGATTGTGTAAA  592

seq1  GATAGTACATGCAAGGGTAGAAGTGTAACTCAAAACTCTTCCCCAGCTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTACATGCAAGGGTAGAAGTGTAACTCAAAACTCTTCCCCAGCTCC  642

seq1  TCCCTGTGAGGCCGTTGCTCTTTTCTTGTGAACCTGGCTATAACACACTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGAGGCCGTTGCTCTTTTCTTGTGAACCTGGCTATAACACACTG  692

seq1  AGGCCCTTCACACGCAAACAATACACTTCTTCAAAACTTAGATTATCCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTCACACGCAAACAATACACTTCTTCAAAACTTAGATTATCCTA  742

seq1  TTTGTTATTTTTGCCTGACCCATGCATCCTATGAGTTAGTTTCATTGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTTGCCTGACCCATGCATCCTATGAGTTAGTTTCATTGTTT  792

seq1  TCCCTGGGATTAATTCCTGCAGCCTACAGCCCATTCGAGTTCATCATCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGATTAATTCCTGCAGCCTACAGCCCATTCGAGTTCATCATCAC  842

seq1  AGCAGATGCTGCTCATACCCATGGGAACATTGTATGTCTGCCTACTAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGCTGCTCATACCCATGGGAACATTGTATGTCTGCCTACTAGAT  892

seq1  ATTCTTTTTACTTATATATTTTTGTAAGCAATAAATTTTTATGACAATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTACTTATATATTTTTGTAAGCAATAAATTTTTATGACAATTG  942

seq1  CAAAATTTTCCTAAGTTATTCTCTCTATGGTCTATTAAATAGTGTTTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTTCCTAAGTTATTCTCTCTATGGTCTATTAAATAGTGTTTCTC  992

seq1  CTTTTAAATACTTAATTTTATTGTTATTCTTACACCATTTTTCTTTCCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATACTTAATTTTATTGTTATTCTTACACCATTTTTCTTTCCTT  1042

seq1  TTCACATTTTGAAGTTTAAGACAATTCATAGGTTAGGCTTTATTCAGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTTGAAGTTTAAGACAATTCATAGGTTAGGCTTTATTCAGAAA  1092

seq1  ATTCTCATTTATTTATGTATAGGTAGCCCAATTTATAAAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTTATTTATGTATAGGTAGCCCAATTTATAAAGAATTC  1137

seq1: chr1_81599553_81600737
seq2: B6Ng01-042E09.g_67_1265

seq1  GAATTCATTTCTTCCTGCTCTTGACTATGGACACAAATTGTTGCTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTCCTGCTCTTGACTATGGACACAAATTGTTGCTACCTT  50

seq1  GACTTTCCAGTGATACACTGTAACCTGAAATTGGGAGGAAAAAGAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCAGTGATACACTGTAACCTGAAATTGGGAGGAAAAAGAAAACC  100

seq1  AAATACATTAATATTTCCTTCATAGTCATGTCTGTTCTTTGAAATTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTAATATTTCCTTCATAGTCATGTCTGTTCTTTGAAATTTGAT  150

seq1  CATTTCACTCTTCAGTATTTGACTTTGTACACTGTGGCCAACATACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACTCTTCAGTATTTGACTTTGTACACTGTGGCCAACATACATGA  200

seq1  TGGTGTGGCTCCTCAAATTTAGACCCAGGATGAAGGCAGCATAGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGCTCCTCAAATTTAGACCCAGGATGAAGGCAGCATAGGAGAGA  250

seq1  AGGATTAGAAAGGCTGCATCAGAAATAGCAAACTGTCGATGCAAAAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGAAAGGCTGCATCAGAAATAGCAAACTGTCGATGCAAAAACCT  300

seq1  AAGTAAATAATTATTAGCAACCATGTTGTCAATCGTAAGGTCATTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAATTATTAGCAACCATGTTGTCAATCGTAAGGTCATTTTTAT  350

seq1  TTCATAAATACAGGATATTTTCTTTTTAAGTTAATACATTTGAAATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATACAGGATATTTTCTTTTTAAGTTAATACATTTGAAATGTCA  400

seq1  TCTACACATTAAAGTCTACTGAATAAAAGTGAGTGCCCAGAGATCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATTAAAGTCTACTGAATAAAAGTGAGTGCCCAGAGATCTTTGG  450

seq1  TACACGTAAAAATGGCATTTAGCAATCAAGACTATCTGTATAAAATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTAAAAATGGCATTTAGCAATCAAGACTATCTGTATAAAATGGAA  500

seq1  ATGTATGACAGTCAAAATCACTCTAAGTATATGTCCAAGAATAACATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGACAGTCAAAATCACTCTAAGTATATGTCCAAGAATAACATATA  550

seq1  TTTGCAGGAAGAGATCTTGAATTCCTGGTCATAAGAAGTTGTTGCTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGAAGAGATCTTGAATTCCTGGTCATAAGAAGTTGTTGCTAAGA  600

seq1  TATGGATAGAAACTGTTGACCAAAGAAATTATACTGTAAAGACAGAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATAGAAACTGTTGACCAAAGAAATTATACTGTAAAGACAGAGCAA  650

seq1  TAGGCAGGTTCAAAGGGAAAGTATCATTCTTAGTAATGATTCAGTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGTTCAAAGGGAAAGTATCATTCTTAGTAATGATTCAGTTTTAA  700

seq1  T-CCCCCCCGTTGTACC-AATCTACACACACATACAAACACACACACACA  748
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCGTTGTACCAAATCTACACACACATACAAACACACACACACA  750

seq1  TACACACACACACACACACACACACACACACACACACACACAGGAATGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACACACAGGAATGAG  800

seq1  CAT-AAAGAAATAGAAATGTAAAGACTTGCTGTAAACTTGGTAATTTTAT  847
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAATAGAAATGTAAAGACTTGCTGTAAACTTGGTAATTTTAT  850

seq1  CTTAAGTTTCAAGGGTAATTTGAAACACAAAATCATGGAAATATTTGTTA  897
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTAAG-TTCAAGGTTAATTTGAAACACAAAATCATGGAAATATTTGTTA  899

seq1  ACTGTCTCTTAAAGAATATAAACTTCTCTTTTACTCGACTGTCGTTGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTAAAGAATATAAACTTCTCTTTTACTCGACTGTCGTTGATA  949

seq1  AAGTAACTAAATACAAAATGATTGCTCTT-AGGTTTGATATATTTGATTT  996
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  AAGTAACTAAATACAAAATGATTGCTCTTAAGGTTTGATATA-TTGATTT  998

seq1  CATGGAGGAATGTATAGTCTTCATTAAAAGT-ATCA-CATAAGTA-TGCA  1043
      ||||||||||||||||||||||||||||||| |||| ||| |||| ||||
seq2  CATGGAGGAATGTATAGTCTTCATTAAAAGTAATCACCATTAGTATTGCA  1048

seq1  GTTGTGAAGAAAA-TCTTAG-ACTGTTTTCTGTTAATGTGCCAGAAT-AC  1090
      ||||||||||||| |||||| |||||||||||||| || | |||||| ||
seq2  GTTGTGAAGAAAATTCTTAGAACTGTTTTCTGTTATTGGGGCAGAATAAC  1098

seq1  CT-GAGACTAGATA-ACTTACCAGATAAAGGGTTTTATGTAACTTATA-G  1137
      || ||||||||||| ||||||||||| ||||||||||||||||||||| |
seq2  CTGGAGACTAGATACACTTACCAGAT-AAGGGTTTTATGTAACTTATATG  1147

seq1  T-TCTG-GAAGCTGGGAATCCAA-GGCTAGCCACAGATT-GGGTGAGGTT  1183
      | |||| || ||||||||||||| |||||||||  |||| ||| ||||||
seq2  TCTCTGAGAGGCTGGGAATCCAAGGGCTAGCCAAGGATTGGGGGGAGGTT  1197

seq1  CT  1185
      ||
seq2  CT  1199