BAC Information

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BAC

Clone NameB6Ng01-042F21
Chromosome1 (Build37)14 (Build37)
Map Location 50,832,392 - 50,832,719112,795,467 - 112,796,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042F21.bB6Ng01-042F21.g
ACCDH868767DH868768
length9651,115
definitionDH868767|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F21, 5' end.DH868768|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,392 - 50,832,719)(112,795,467 - 112,796,581)
sequence
gaattctttgtttagctctgagccccatttttaatgggttatttgatttt
ctggagtccaccttcttgagttctttatatatattggatattagtcccct
acctgatttaggataggtaaagatcctttctcaatctgttggtggtcttt
ttctcttactggcactgtcttttgacttacagaagctttgcaattttatg
aggtcccatttggcgattcttgatcttacagcacaagccattgctgttct
attcaggaatttttcccctgtgcccatatcttttaggtttttccccactt
tctcctctacaagcttcactgtctctgatatccttgtttttaataacaga
atatcactccattgtgtaaatgaatcacattttctgaaaccattctttgg
ttaaggaacttctgagttgtttccagttttgggttgttatgaataaagct
gctatgaacatagtagatcctgatcttaagccgtattacagagtaataat
gttaaagactgcatggtcctgatatagaaagagatatgttgatcaatgga
atcaagcagatacgttgattaattggttgaagaagccaaaaccacacaag
gaaaaattagtcatcttcaacaaatgaagttagtctaactggatgtctgc
aaaaagaaggcaaatagattcatttttgtggtgtattgggctatacacag
acagtcaggtctccagtcgagctgaggtctgaaccctggtagaacctggt
ggtgataattcacttacatgggagggtaggcatttgttgatgtttccttg
taaccctggctcctgttgaagttaccacccccacagcccccacaggagaa
gcatggcttttagtcacttagacaacgtctcaagcttctgatcttcaggc
tagactcctcccaattacctagcaacagcaagataataagcctaccatta
aagggactgtttagc
gaattcaattaaaacggaaattaatcgtgttctttcttataaagaaagaa
agtgttctggaaatagaaccaatattgaaatatggtgaaattcaagttaa
aaatcacattgctcttcacagcagatatgcaaggggaaacttggtacaat
tcaaatgttacattgcaaaatgtatctttctcaacatttataattagttc
actccataatgaataactttgtttttgagcagttcacacagtattcgtat
ttattaaagtgtgtggtagcagattatatgaaaaaatgcataatatttag
gacacagcaactctctgtcaagctctgtgcaatatgattaacatgtatca
ttttacttaatttctacaaaagaactgaaagagtacctatcctgatctca
ttttacaggtgaaaagatgtaatagaaattacaaacacacacacacacac
acatatgtataaatatatatgtatatatatttatatacatataacacata
ttagaaattacatatataagtaatagaaaatatatgtatatgtgtatatt
aaaataataaacttatatgtaacccatatacatctgataatgggttataa
ttacattcatcattcatgccttgtagcttaaaacaaaaaacaagcccttc
cgctcgactcgagactcgagccccgggctaccctgccagcagagtcttgc
ccaacacccgcaagggcccacacgggactccccacgggaccctaagacct
ctggtgagtggaccacagtgcctgccccaatccaatcacgcggaacttga
gactgcggtacatagggaagcaggctacccgggcctgatctggggcacaa
gtcccttctgctcgactcgagactcgagccccgggctaccttgccagcag
agtcttgcccaacacccgcaagggcccacacgggactcctcacgggaccc
taagactctggtgagtggaccacagtgcctgccccaatccaatcgcgcga
acttgaagactgccgtactaaggagcaagctacccggctgatctgggcac
aagttcctttctgctcgactcagactcgagctcggctacctgcagcgagt
tggccaacacccgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832392_50832719
seq2: B6Ng01-042F21.b_40_366 (reverse)

seq1  CAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTCCAAGAT  50
      |||||||| |||| ||| |||||||||| |||||||||| |||  |||||
seq2  CAGAGACAGTGAAGCTTGTAGAGGAGAAAGTGGGGAAAAACCTAAAAGAT  50

seq1  ATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGT  100

seq1  AAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCAAACCTTCTGTA  150
      |||||  ||||| | ||||||||| |||||||| ||||||| ||||||||
seq2  AAGATCAAGAATCGCCAAATGGGACCTCATAAAATTGCAAAGCTTCTGTA  150

seq1  AGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAACAGATTGGGAG  200
      || |||||||||    || ||||| |||||| |||||||||||||| || 
seq2  AGTCAAAAGACAGTGCCAGTAAGAGAAAAAGACCACCAACAGATTGAGAA  200

seq1  AGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGATCCAATATATA  250
      ||||||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGGTAGGGGACTAATATCCAATATATA  250

seq1  TAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAA  300
      ||||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  TAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAA-CCCATTAAAA  299

seq1  ATGGGGCTCAGAGCTGAACAATGAATTC  328
      ||||||||||||||| ||||| ||||||
seq2  ATGGGGCTCAGAGCTAAACAAAGAATTC  327

seq1: chr14_112795467_112796581
seq2: B6Ng01-042F21.g_78_1179 (reverse)

seq1  TGCGGGTGTTGGGCAAGACTCTGCTGGCAGGGTAGCCCGGGGCTCGAGTC  50
      |||||||||||| ||  |||| ||| ||| |||||||  | |||||||||
seq2  TGCGGGTGTTGGCCA--ACTC-GCT-GCA-GGTAGCC--GAGCTCGAGTC  43

seq1  TCGAGTCGAGCAG-AAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCT  99
      | ||||||||||| |||| ||||||| ||||||||||  ||||||||| |
seq2  T-GAGTCGAGCAGAAAGGAACTTGTG-CCCAGATCAG--CCGGGTAGCTT  89

seq1  GCTTCCCTATGTACCGCAGTC-TCAAGTTCCGCGCGATTGGATTGGGGCA  148
      |||  |||  |||| |||||| ||||||| ||||||||||||||||||||
seq2  GCT--CCTTAGTACGGCAGTCTTCAAGTT-CGCGCGATTGGATTGGGGCA  136

seq1  GGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCCG  198
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GGCACTGTGGTCCACTCACCAGA-GTCTTAGGGTCCCGTGAGGAGTCCCG  185

seq1  TGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGG  235

seq1  GGCTCGAGTCTCGAGTCGAGCAGAAGGGACTTGTGCCCCAGATCAGGCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGAGTCTCGAGTCGAGCAGAAGGGACTTGTGCCCCAGATCAGGCCC  285

seq1  GGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGTGATTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGTGATTGGA  335

seq1  TTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTCCCGTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTCCCGTGGG  385

seq1  GAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAGGG  435

seq1  TAGCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGGCTTGTTTTTTGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGGCTTGTTTTTTGTTT  485

seq1  TAAGCTACAAGGCATGAATGATGAATGTAATTATAACCCATTATCAGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACAAGGCATGAATGATGAATGTAATTATAACCCATTATCAGATG  535

seq1  TATATGGGTTACATATAAGTTTATTATTTTAATATACACATATACATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGGTTACATATAAGTTTATTATTTTAATATACACATATACATATA  585

seq1  TTTTCTATTACTTATATATGTAATTTCTAATATGTGTTATATGTATATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTACTTATATATGTAATTTCTAATATGTGTTATATGTATATAA  635

seq1  ATATATATACATATATATTTATACATATGTGTGTGTGTGTGTGTGTTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACATATATATTTATACATATGTGTGTGTGTGTGTGTGTTTGT  685

seq1  AATTTCTATTACATCTTTTCACCTGTAAAATGAGATCAGGATAGGTACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATTACATCTTTTCACCTGTAAAATGAGATCAGGATAGGTACTC  735

seq1  TTTCAGTTCTTTTGTAGAAATTAAGTAAAATGATACATGTTAATCATATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTTTTGTAGAAATTAAGTAAAATGATACATGTTAATCATATT  785

seq1  GCACAGAGCTTGACAGAGAGTTGCTGTGTCCTAAATATTATGCATTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGCTTGACAGAGAGTTGCTGTGTCCTAAATATTATGCATTTTTT  835

seq1  CATATAATCTGCTACCACACACTTTAATAAATACGAATACTGTGTGAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCTGCTACCACACACTTTAATAAATACGAATACTGTGTGAACT  885

seq1  GCTCAAAAACAAAGTTATTCATTATGGAGTGAACTAATTATAAATGTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAAACAAAGTTATTCATTATGGAGTGAACTAATTATAAATGTTGA  935

seq1  GAAAGATACATTTTGCAATGTAACATTTGAATTGTACCAAGTTTCCCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATACATTTTGCAATGTAACATTTGAATTGTACCAAGTTTCCCCTT  985

seq1  GCATATCTGCTGTGAAGAGCAATGTGATTTTTAACTTGAATTTCACCATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTGCTGTGAAGAGCAATGTGATTTTTAACTTGAATTTCACCATA  1035

seq1  TTTCAATATTGGTTCTATTTCCAGAACACTTTCTTTCTTTATAAGAAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTGGTTCTATTTCCAGAACACTTTCTTTCTTTATAAGAAAGA  1085

seq1  ACACGATTAATTTCCGT  1115
      |||||||||||||||||
seq2  ACACGATTAATTTCCGT  1102