BAC Information

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BAC

Clone NameB6Ng01-042J09
Chromosome1 (Build37)
Map Location 48,436,091 - 48,437,190
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666869, LOC546734
Downstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J09.bB6Ng01-042J09.g
ACCDH868916DH868917
length1,0941,032
definitionDH868916|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J09, 5' end.DH868917|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacttaacagaataatattttacatcttcatctatggaacagaa
tgttctccaaaatagaacaaattataagctccaaaagacaaacatacaaa
ataattaaaatatatctttgtacattagactacgatagaatagcatttga
aataatcagtaagaagaaactaagaaacaacacaattgcagattgaagaa
tgtacctttgaagactgaatccttgaatacttcatgaaagaatttgaaat
attcctcaaaccaaataaaaatgatcaaacagtctatcaacaactataac
gttaatccagtgaagggcaagaatgaaaatgtatagatataaatacaaac
atttttttttaaatcatagagattgcaaacaacctgattgtgcttttcaa
agtttagaaaaagacagaaaaatcagacacaatatattaccagatattag
aaagagtaggatagagattgataaaacggataatataacaacatatacct
cacagcagtatgactgctggaacaaaggcacccaagtgcctacctccagg
actcatgtccttgccacgagcaaaggagggatgggaaagatggaatacac
agtggaaatatgggagcaaaaatggagccaaatgattagtgcactgtgga
aggagctggcactggagacatgacaccagtgaggaacaggcagataagag
gaattgggctaggctggtgaggaccatgtctgggtctatggttctactga
ggtctcacttctgggtaaatttctgtgcctgttttgccactgaaagcctt
ctggagatcagtagactgggctgctgcctgagactatgttgaagttagtg
cccatcctgacgccaagggaaacaaactgatccgagtatcctgccctgcc
acctgaagccatggcccatgttgccactgagggccatgtctgagtctggt
gctcttatcacagccagttgttgattcctgcggcctctagttacactgtg
tactgaagctatgtgagctgatatgactctgcaccttgtctggcagcatt
ggagtgctctgtttggcatgggtatgggaaagctggcttgcatg
gaattcctaaaagtattaccatctatgatttccatttgtattacagaaat
agagtaataaaatccacatggtattcacataacaacagacacctagataa
atggactctaactgaagtcccagccataaatctacatacaactggtttct
tataaagaatccataaatacacaatggaataagacagcatcttcaacaaa
tcaggttatttaaactgtatatctttgagtagaagactgcaaatagatcc
atttttatcatgcagcacaaataatcaattttaagtaggtcaaagacctt
aacataaaatcagataccctgaacctggtagtaaataaagtaggtaataa
atttgaacacattggcataaaacaactttcttaataaaacaccagtagtg
cagagactaagatcgacaattaataaaggacatcttatgaaactcaaatg
tgtctataagtcaaaggacaccattgatagaacaaaagagaaacttacag
aatgggagatgaattttaccaattccatatccaatagcggaataatatta
aaaatatgtaagaactccagaaaccagatatcaaaaaattatacatccaa
aagatggaccatctagtgattgccatatgcagggatccatcccataatca
gcctccaaacgctgacactattgcacacactagcaaaattttgctgaaag
gacccagatatagctctctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgatcacagtcagctattggatggatcacatggcccccaa
tgcaggagctagagaaagtacccaaggagctaaagggaactgcaacccta
taggtggaacaacaatatgaactaaccagtaccccggagctcttgtctct
agctgcatatgcatcaaaagatggcctagtcggccatcactgcaaagaga
ggcccactggacttgccactttagatgccccagtacagggaacgcagggt
caaaaaagggggagtgggttgggtaaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48436091_48437190
seq2: B6Ng01-042J09.b_45_1138

seq1  GAATTCCACTTAACAGAATAATATTTTACATCTTCATCTATGGAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAACAGAATAATATTTTACATCTTCATCTATGGAACAGAA  50

seq1  TGTTCTCCAAAATAGAACAAATTATAAGCTCCAAAAGACAAACATACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCAAAATAGAACAAATTATAAGCTCCAAAAGACAAACATACAAA  100

seq1  ATAATTAAAATATATCTTTGTACATTAGACTACGATAGAATAGCATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAATATATCTTTGTACATTAGACTACGATAGAATAGCATTTGA  150

seq1  AATAATCAGTAAGAAGAAACTAAGAAACAACACAATTGCAGATTGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAGTAAGAAGAAACTAAGAAACAACACAATTGCAGATTGAAGAA  200

seq1  TGTACCTTTGAAGACTGAATCCTTGAATACTTCATGAAAGAATTTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTGAAGACTGAATCCTTGAATACTTCATGAAAGAATTTGAAAT  250

seq1  ATTCCTCAAACCAAATAAAAATGATCAAACAGTCTATCAACAACTATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAAACCAAATAAAAATGATCAAACAGTCTATCAACAACTATAAC  300

seq1  GTTAATCCAGTGAAGGGCAAGAATGAAAATGTATAGATATAAATACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCAGTGAAGGGCAAGAATGAAAATGTATAGATATAAATACAAAC  350

seq1  ATTTTTTTTTAAATCATAGAGATTGCAAACAACCTGATTGTGCTTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAAATCATAGAGATTGCAAACAACCTGATTGTGCTTTTCAA  400

seq1  AGTTTAGAAAAAGACAGAAAAATCAGACACAATATATTACCAGATATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAAAAGACAGAAAAATCAGACACAATATATTACCAGATATTAG  450

seq1  AAAGAGTAGGATAGAGATTGATAAAACGGATAATATAACAACATATACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGGATAGAGATTGATAAAACGGATAATATAACAACATATACCT  500

seq1  CACAGCAGTATGACTGCTGGAACAAAGGCACCCAAGTGCCTACCTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGTATGACTGCTGGAACAAAGGCACCCAAGTGCCTACCTCCAGG  550

seq1  ACTCATGTCCTTGCCACGAGCAAAGGAGGGATGGGAAAGATGGAATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTCCTTGCCACGAGCAAAGGAGGGATGGGAAAGATGGAATACAC  600

seq1  AGTGGAAATATGGGAGCAAAAATGGAGCCAAATGATTAGTGCACTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAATATGGGAGCAAAAATGGAGCCAAATGATTAGTGCACTGTGGA  650

seq1  AGGAGCTGGCACTGGAGACATGACACCAGTGAGGAACAGGCAGATAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGGCACTGGAGACATGACACCAGTGAGGAACAGGCAGATAAGAG  700

seq1  GAATTGGGCTAGGCTGGTGAGGACCATGTCTGGGTCTATGGTTCTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGCTAGGCTGGTGAGGACCATGTCTGGGTCTATGGTTCTACTGA  750

seq1  GGTCTCACTTCTGGGTAAATTTCTGTGCCTGTTTTGCCACTGAAAGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACTTCTGGGTAAATTTCTGTGCCTGTTTTGCCACTGAAAGCCTT  800

seq1  CTGGAGATCAGTAGACTGGGCTGCTGCCTGAGACTATGTTGAAGTTAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATCAGTAGACTGGGCTGCTGCCTGAGACTATGTTGAAGTTAGTG  850

seq1  CCCATCCTGACGCCAAGGGAAACAAACTGATCCGAGTATCCTGCCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGACGCCAAGGGAAACAAACTGATCCGAGTATCCTGCCCTGCC  900

seq1  ACCTGAAGCCATGGCCCATGTTGCCACTGAGGGCCATGTCTGAGTCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGCCATGGCCCATGTTGCCACTGAGGGCCATGTCTGAGTCTGGT  950

seq1  GCTCTTATCACAGCCAGGTGTTGATTCCTGCGACCTCTAGTTACCACTGT  1000
      ||||||||||||||||| |||||||||||||| |||||||||| ||||||
seq2  GCTCTTATCACAGCCAGTTGTTGATTCCTGCGGCCTCTAGTTA-CACTGT  999

seq1  GTTACCTGAAGCTATGTGAGCTGATATGACTCTGCACCTTGTCTGGGCAG  1050
      ||   ||||||||||||||||||||||||||||||||||||||| |||||
seq2  GT--ACTGAAGCTATGTGAGCTGATATGACTCTGCACCTTGTCT-GGCAG  1046

seq1  CATTGGAGTTGGCTCTGTTTGGCATGGGTATGGGAAAGCTGGCTTGCATG  1100
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGT--GCTCTGTTTGGCATGGGTATGGGAAAGCTGGCTTGCATG  1094