BAC Information

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BAC

Clone NameB6Ng01-042O03
Chromosome1 (Build37)
Map Location 100,861,956 - 100,862,916
singlet/doubletsinglet
Overlap genenone
Upstream genePam, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042O03.bB6Ng01-042O03.g
ACCDH869116DH869117
length1,209972
definitionDH869116|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O03, 5' end.DH869117|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgtgatcccttttattaatggctcaattggacataacctagt
cctattattaaaaactagacaaaagatagcaaatttgcctccattttcct
tgtacatgaatatttcatttgttttaccttcatttattttaggaagtttt
atgcccatcctttctagctgtctccccctcccactccccctcccatatac
actctcccttctccccttttccacctgatactttttttaccacttgccac
accccacaggcccattccaatgaaaagtttaattctattttcttctccag
agatatttaggtgtccccctagtctcttcatctctatataacctctctgg
aaccacagagtataggttgtttatcatttacttaacagctaatgtcaggt
ataattgaatctgttttataattagcttactggttctcagttactgcact
caggtttttttctacttccttccatttacctgaaaatttcatgaaaaatt
ttttaacatctcagtaacactccattgggtaaatgtaccacattttcctt
atcaatttttctaatttgtttctaatttatagcttttatgaaaagatcag
caagaaacagggttaaacaagtgcccttatagtagaatgaagtatccttt
gggtaaaagcctaagagtgttatagctagatcataaggtagattgatttt
caactttttgacaaactgtcatgcaggtttccatacaggctataaaattt
gcatgccagctagcaatggagcagtgttttcattattacatatccttacc
aacatgagctatcacttatgttgttgaagttagccattcagactggtata
agatgaaatctcaaagtagtttttattttcacttccttgatggtaggtat
gttgattagtctataaaagtttcgtagccattttagtttcctctataaga
atttggttagaactgtactccattttaattgattattttgggatttttta
atactagttcatacatttttttaaatatttggaatagacctttatcaaat
ggtaaagacttcaatcaaagctgatggttctacaatataggtctctagaa
tctttcagtcaaggtcactttaatctatcttatggcgatctacggatctt
cgaacttctggcactgtacatcgatcttacgtaatggcatagactgatcg
tgacaattg
gaattccacttgatattttcaaatagatgttttatatacaaaaatgtaat
ccaaaaataaatggaatgtttaggaagtatagagagtccccaatttaggg
atacaagcattttctgttagcatttgctaagttgatgtataggtggatgc
taagagtacattttgaagtgataggtatataggcccagaggagtgagtta
aagtactagagactgttttctttaaaccattaacttaatttaattcattt
ggactgtaaatagtgcgagcaaaatgccttactgaacaaaggcatttatc
aagagtacccttgtttgaatagttatgatttacatggcaattatttacaa
aacacatatttacatggttcctaattgcacattaggaaattatgtgtgag
agatgtaattttaacatctcagaaacaacctccttatatagactgaatta
cattcaggaacatgtctggagacataatgggacaatctaataactagcag
gtgatcctgaagtggcttgctgcagattattatataatctgccacaggtg
agcccttattaagcaaagctgtgagggactcattttaggaaagtttcctg
ctataaagatgcttttcctgttattattaaacatatatatcactaagcag
gagtacacccttttggagcagatctctgcagatccacgaagatggactat
cttgtagtgatgctatatagacaaatagatgacataagtattaatgatga
tcttataagaattcctaaaattatatctgtgattattaagctctttatta
atggaactgctattcttcttcttcttcttcttcttcttttttttgttttg
ctattattcttctgatagtcaacgctgcattgagaactttgtcagtctcc
aaagtatcaccagttaattgttcttagatggtacagacttctcctccaca
gagctattccagaggttttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100861956_100862916
seq2: B6Ng01-042O03.g_68_1026

seq1  GAATTCCACTTGATATTTTCAAATAGATGTTTTATATACAAAAATGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGATATTTTCAAATAGATGTTTTATATACAAAAATGTAAT  50

seq1  CCAAAAATAAATGGAATGTTTAGGAAGTATAGAGAGTCCCCAATTTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAAATGGAATGTTTAGGAAGTATAGAGAGTCCCCAATTTAGGG  100

seq1  ATACAAGCATTTTCTGTTAGCATTTGCTAAGTTGATGTATAGGTGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCATTTTCTGTTAGCATTTGCTAAGTTGATGTATAGGTGGATGC  150

seq1  TAAGAGTACATTTTGAAGTGATAGGTATATAGGCCCAGAGGAGTGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTACATTTTGAAGTGATAGGTATATAGGCCCAGAGGAGTGAGTTA  200

seq1  AAGTACTAGAGACTGTTTTCTTTAAACCATTAACTTAATTTAATTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAGAGACTGTTTTCTTTAAACCATTAACTTAATTTAATTCATTT  250

seq1  GGACTGTAAATAGTGCGAGCAAAATGCCTTACTGAACAAAGGCATTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAAATAGTGCGAGCAAAATGCCTTACTGAACAAAGGCATTTATC  300

seq1  AAGAGTACCCTTGTTTGAATAGTTATGATTTACATGGCAATTATTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCCTTGTTTGAATAGTTATGATTTACATGGCAATTATTTACAA  350

seq1  AACACATATTTACATGGTTCCTAATTGCACATTAGGAAATTATGTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATTTACATGGTTCCTAATTGCACATTAGGAAATTATGTGTGAG  400

seq1  AGATGTAATTTTAACATCTCAGAAACAACCTCCTTATATAGACTGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAATTTTAACATCTCAGAAACAACCTCCTTATATAGACTGAATTA  450

seq1  CATTCAGGAACATGTCTGGAGACATAATGGGACAATCTAATAACTAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGAACATGTCTGGAGACATAATGGGACAATCTAATAACTAGCAG  500

seq1  GTGATCCTGAAGTGGCTTGCTGCAGATTATTATATAATCTGCCACAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTGAAGTGGCTTGCTGCAGATTATTATATAATCTGCCACAGGTG  550

seq1  AGCCCTTATTAAGCAAAGCTGTGAGGGACTCATTTTAGGAAAGTTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTATTAAGCAAAGCTGTGAGGGACTCATTTTAGGAAAGTTTCCTG  600

seq1  CTATAAAGATGCTTTTCCTGTTATTATTAAACATATATATCACTAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGATGCTTTTCCTGTTATTATTAAACATATATATCACTAAGCAG  650

seq1  GAGTACACCCTTTTGGAGCAGATCTCTGCAGATCCACGAAGATGGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACCCTTTTGGAGCAGATCTCTGCAGATCCACGAAGATGGACTAT  700

seq1  CTTGTAGTGATGCTATATAGACAAATAGATGACATAAGTATTAATGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTGATGCTATATAGACAAATAGATGACATAAGTATTAATGATGA  750

seq1  TCTTATAAGAATTCCTAAAATTATATCTGTGATTATTAAGCTCTTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAGAATTCCTAAAATTATATCTGTGATTATTAAGCTCTTTATTA  800

seq1  ATGGAACTGCTATTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTGTTTT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGAACTGCTATTCTTCTTCTTCTTCTTCTTCTTC-TTTTTTTTGTTTT  849

seq1  GCTATTATTCTTCTGATAGTCAACGCTGCATTGAGAACTTTGTCAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATTCTTCTGATAGTCAACGCTGCATTGAGAACTTTGTCAGTCTC  899

seq1  CAAAGTATCACCAGTTAATTGTTCTTAGATGGTACAGACTTCTCCTCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATCACCAGTTAATTGTTCTTAGATGGTACAGACTTCTCCTCCAC  949

seq1  AGAGCTTATTC  961
      ||||| |||||
seq2  AGAGC-TATTC  959