BAC Information

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BAC

Clone NameB6Ng01-042O16
Chromosome1 (Build37)
Map Location 61,259,129 - 61,413,193
singlet/doubletdoublet
Overlap genenone
Upstream geneNbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042O16.bB6Ng01-042O16.g
ACCDH869140DH869141
length1,1871,123
definitionDH869140|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O16, 5' end.DH869141|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,259,129 - 61,260,621)(61,412,065 - 61,413,193)
sequence
gaattcactgtgataaatgtcagctgggggttctacctagcacactgcct
gtctggggatagaaagcacagcagctgggacctacgcaggagccaggctt
cctcgagctctgaggaaggttgtttcttacaccaaaccttgatatttcaa
ctccactttgtagagacgggaaatgtggcacagctatgaactgacttgtt
cagatcctctagcctctgccaggctcagtcaagagtctacccagtatggg
tgtaccgtgctcttctcccaggggaatttacagtattcccaggacttatc
cttctcttggaccttagctttacaaaggcagccgagaaggaagatctgag
gaccgaaggtctaacatgtggagaaaggttagcataattccaatgaggaa
attcttctccaaaaagcaaattaaatgagttttttgcaccagaatatttg
gaggcctacaactatatgcagcgtgttgttgttgttgatgttttgttttt
aaacacactcacatctaggaaagcaacaagctctcacaggcaaggcacat
ctgtaaccccaaggacagaagacttccatggtgttgactgtcatttgttt
ccaagtggcatctcatacacagaattttataattcagaaacgtttgcaat
ggcctacacatttttttttttgccttccttttagaaaatcattaagtaaa
tcaagtaatttaaaaccccaagaagtcccacagtgaagcaacctgtttag
atgtatcggatccaaaattttccatacttatttagacccagagcatcttt
ctcacatgagttctatttacatctcacacactcgagaaaatgttggacca
ggtttaggctaacttgggcagcaattctcaggtctctcctaagagcagga
gccaaagcaccattagctcatgggttcccagaagttcagtgtggaggcgc
gaggctctgttggtcctgctcgctctcgtcatgtctcactcgtgagataa
cagtgcgtgcgtgaacatggccgatcacaacaaacggcgatctcacattc
tgactctatttccttacgcttttgaactcctggagccaaggcagcgtgct
tacattgcataggaagttctttcctttactttttgccatgctgctctagc
cgtcagtcaggacctgtgcgttccactctggtaacaa
gaattctttggaaatggttggaacaggatgacagcccgttcacctggatc
cggctgagctgcctggttcaccgcgagctcagagacttgccctgatttga
gattcaacttagaaatccttgggtttttttcaaactatcaggaaacattc
caaagccggggttcaaagtgaaattaccagcacctctttctggagagcgt
gctagcaaagggagtcggaggcagccacactctgaaggcttagggtttct
ctctcagcgctgacccctgctctacagaaaggaagggcagcatcgaggtg
tttatattaggatactttcccataataatgttttctgttcatatctttat
tttcactgctaaaagcattcctatgattttcttgatcctcatagttatgt
tatgtaaacagtacagataatctgggctccagtttacagatgaggaaatc
aagatcctggcaattattttacttttcagtaataactaaaaacatggacc
tacataaggtctgatgctttaagtgcggacatttcctttttaatgctgcc
tcataaactttagataaattgataaaggaaagtccatggaaatgtaaatc
taatttaagtgtcttctttttttttattctaaaaacattttcttggtttc
taaatccaaaagatactcagaaaaagattatgtggttgtatcttttcctt
ccccaacgccaagtgtgaggcaggctctttaaatcattcaagacagctaa
gaaaatctcctatttttaagtttcccaagagaagaagattcctcaacccc
tatgggtaacttttcctggtgtttaacatttctcaaagtcaggaaattct
ttcttgtgtcctaaatccccaatgctgtgacttgagccggcttcctcccg
gttggtcttcggtggagatgctgaacagctgtctgcctcaacctagggaa
catttcaagagaggctgttaagtggcttctgcagcccatcttccacggcc
cagtaatcccatgcctttcactacttcttatagatctcggttcagccctt
taacccttgcctctgtcttctcccacataactcaggttgctgtggaatgg
agggtcggacaggtaaggacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61259129_61260621
seq2: B6Ng01-042O16.b_44_1230

seq1  GAATTCACTGTGATAAATGTCAGCTGGGGGTTCTACCTAGCACACTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGATAAATGTCAGCTGGGGGTTCTACCTAGCACACTGCCT  50

seq1  GTCTGGGGATAGAAAGCACAGCAGCTGGGACCTACGCAGGAGCCAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGATAGAAAGCACAGCAGCTGGGACCTACGCAGGAGCCAGGCTT  100

seq1  CCTCGAGCTCTGAGGAAGGTTGTTTCTTACACCAAACCTTGATATTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGCTCTGAGGAAGGTTGTTTCTTACACCAAACCTTGATATTTCAA  150

seq1  CTCCACTTTGTAGAGACGGGAAATGTGGCACAGCTATGAACTGACTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTTGTAGAGACGGGAAATGTGGCACAGCTATGAACTGACTTGTT  200

seq1  CAGATCCTCTAGCCTCTGCCAGGCTCAGTCAAGAGTCTACCCAGTATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCTAGCCTCTGCCAGGCTCAGTCAAGAGTCTACCCAGTATGGG  250

seq1  TGTACCGTGCTCTTCTCCCAGGGGAATTTACAGTATTCCCAGGACTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGTGCTCTTCTCCCAGGGGAATTTACAGTATTCCCAGGACTTATC  300

seq1  CTTCTCTTGGACCTTAGCTTTACAAAGGCAGCCGAGAAGGAAGATCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGGACCTTAGCTTTACAAAGGCAGCCGAGAAGGAAGATCTGAG  350

seq1  GACCGAAGGTCTAACATGTGGAGAAAGGTTAGCATAATTCCAATGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAAGGTCTAACATGTGGAGAAAGGTTAGCATAATTCCAATGAGGAA  400

seq1  ATTCTTCTCCAAAAAGCAAATTAAATGAGTTTTTTGCACCAGAATATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCCAAAAAGCAAATTAAATGAGTTTTTTGCACCAGAATATTTG  450

seq1  GAGGCCTACAACTATATGCAGCGTGTTGTTGTTGTTGATGTTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTACAACTATATGCAGCGTGTTGTTGTTGTTGATGTTTTGTTTTT  500

seq1  AAACACACTCACATCTAGGAAAGCAACAAGCTCTCACAGGCAAGGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTCACATCTAGGAAAGCAACAAGCTCTCACAGGCAAGGCACAT  550

seq1  CTGTAACCCCAAGGACAGAAGACTTCCATGGTGTTGACTGTCATTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCCCAAGGACAGAAGACTTCCATGGTGTTGACTGTCATTTGTTT  600

seq1  CCAAGTGGCATCTCATACACAGAATTTTATAATTCAGAAACGTTTGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGCATCTCATACACAGAATTTTATAATTCAGAAACGTTTGCAAT  650

seq1  GGCCTACACATTTTTTTTTTTGCCTTCCTTTTAGAAAATCATTAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACACATTTTTTTTTTTGCCTTCCTTTTAGAAAATCATTAAGTAAA  700

seq1  TCAAGTAATTTAAAACCCCAAGAAGTCCCACAGTGAAGCAACCTGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAATTTAAAACCCCAAGAAGTCCCACAGTGAAGCAACCTGTTTAG  750

seq1  ATGTATCGGATCCAAAATTTTCCATACTTATTTAGACCCAGAGCATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCGGATCCAAAATTTTCCATACTTATTTAGACCCAGAGCATCTTT  800

seq1  CTCACATGAGTTCTATTTACATCTCACACACTCGAGAAAATGTTGGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGAGTTCTATTTACATCTCACACACTCGAGAAAATGTTGGACCA  850

seq1  GGTTTAGGCTAACTTGGGCAGCAATTCTCAGGTCTCTCCTAAGAGCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGCTAACTTGGGCAGCAATTCTCAGGTCTCTCCTAAGAGCAGGA  900

seq1  GCCAAAGCACCATTAGCTCATGGGTTCCCAGAAGTTCAGTGTGGAGGCGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCACCATTAGCTCATGGGTTCCCAGAAGTTCAGTGTGGAGGCGC  950

seq1  GAGGCTCTGGTGGTCCTGCTCGCTCTCCGTCATGTCTCACTCGTGAGATA  1000
      ||||||||| |||||||||||||||| |||||||||||||||||||||| 
seq2  GAGGCTCTGTTGGTCCTGCTCGCTCT-CGTCATGTCTCACTCGTGAGAT-  998

seq1  AAACAGTGCGGTGCGGTGAAACAT-GCCGATCACCACCAAACGGGCGAAT  1049
       |||||||| |||| ||| ||||| |||||||| || ||||| |||||  
seq2  -AACAGTGC-GTGC-GTG-AACATGGCCGATCA-CAACAAAC-GGCGA--  1040

seq1  TCTCACATTCTGACTC-ATTTCCTTTACGCTTTTGAAAACTCTGGAGGCC  1098
      |||||||||||||||| |||||| |||||||||||||  | ||||||  |
seq2  TCTCACATTCTGACTCTATTTCC-TTACGCTTTTGAACTC-CTGGAG--C  1086

seq1  AAAGGCAGGCGTGCTTACAATGCAGAGGAAGGTTCCTT-CTTTACTTTTT  1147
       |||||| ||||||||||| |||| ||||| |||| || |||||||||||
seq2  CAAGGCA-GCGTGCTTACATTGCATAGGAA-GTTCTTTCCTTTACTTTTT  1134

seq1  GGGCCATGCCTGGCTCTAGCGTGTCATGTTACAGGGAACACCTGCTGTCC  1197
        |||||||   ||||||||  |||| ||  ||||  ||   |||  |||
seq2  --GCCATGC--TGCTCTAGC-CGTCA-GT--CAGG--ACCTGTGCGTTCC  1174

seq1  ACTCT-GTAGCCCAGGCCCCTCAGCCAACTCGCCCAGCTGGTGCTCTCTC  1246
      ||||| ||| |                                       
seq2  ACTCTGGTAACAA-------------------------------------  1187

seq1  CCAGCACGAGCTGTTTCAGGAAAGGGGAATGAAGACTTTGATTTAGTTCT  1296
                                                        
seq2  --------------------------------------------------  1187

seq1  CCCTCCCAGCCCCCTGTTCTCCCCCCCCCCAAGCCCCCAAACTACCTTCT  1346
                                                        
seq2  --------------------------------------------------  1187

seq1  CTCCTCTCCCAGCCTCTTCTGGTTATTGTGTTGGATAGAGGCGGTGATTG  1396
                                                        
seq2  --------------------------------------------------  1187

seq1  AATTAAGAAAGCTGCTGAAAGCAGAAACGGAACGCACAGGAAAAGGAACA  1446
                                                        
seq2  --------------------------------------------------  1187

seq1  AGAGCCTCACACAGGAGCCTTCCCCTTTGCACTCCACTCTGGAACAA  1493
                                                     
seq2  -----------------------------------------------  1187

seq1: chr1_61412065_61413193
seq2: B6Ng01-042O16.g_68_1190 (reverse)

seq1  AATGTCCTTCACCTGCTCCGACCCTCATCTCAACAGCAACCTGAGTTATG  50
      ||||||||| ||||| ||||||||||   || ||||||||||||||||||
seq2  AATGTCCTT-ACCTG-TCCGACCCTCCATTCCACAGCAACCTGAGTTATG  48

seq1  TGGGAGAAGGCAGAGGC-AGGGTTAAAGGGCTGGAAACCGAGATCTATGA  99
      ||||||||| ||||||| |||||||||||||||  ||||||||||||| |
seq2  TGGGAGAAGACAGAGGCAAGGGTTAAAGGGCTG--AACCGAGATCTATAA  96

seq1  GAAGTAGTGAAAGGCATGGGATTACTGGGGCCGTGGAAGATGGGCTGCAG  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGTAGTGAAAGGCATGGGATTACT-GGGCCGTGGAAGATGGGCTGCAG  145

seq1  -AGCCACTTAACAGCCTTCTCTTTGAAATGTTCCCCTAGGTTGAGGCAGA  198
       ||||||||||||||| |||| |||||||||| |||||||||||||||||
seq2  AAGCCACTTAACAGCC-TCTC-TTGAAATGTT-CCCTAGGTTGAGGCAGA  192

seq1  CAGCTGTTCAGCATCTCCACCGAAGACCAACCGGGAGGAAGCCGGCTCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCAGCATCTCCACCGAAGACCAACCGGGAGGAAGCCGGCTCAA  242

seq1  GTCACAGCATTGGGGATTTAGGACACAAGAAAGAATTTCCTGACTTTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCATTGGGGATTTAGGACACAAGAAAGAATTTCCTGACTTTGAG  292

seq1  AAATGTTAAACACCAGGAAAAGTTACCCATAGGGGTTGAGGAATCTTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAACACCAGGAAAAGTTACCCATAGGGGTTGAGGAATCTTCTT  342

seq1  CTCTTGGGAAACTTAAAAATAGGAGATTTTCTTAGCTGTCTTGAATGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGAAACTTAAAAATAGGAGATTTTCTTAGCTGTCTTGAATGATT  392

seq1  TAAAGAGCCTGCCTCACACTTGGCGTTGGGGAAGGAAAAGATACAACCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCCTGCCTCACACTTGGCGTTGGGGAAGGAAAAGATACAACCAC  442

seq1  ATAATCTTTTTCTGAGTATCTTTTGGATTTAGAAACCAAGAAAATGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTTTCTGAGTATCTTTTGGATTTAGAAACCAAGAAAATGTTTT  492

seq1  TAGAATAAAAAAAAAGAAGACACTTAAATTAGATTTACATTTCCATGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAAAAAAAGAAGACACTTAAATTAGATTTACATTTCCATGGAC  542

seq1  TTTCCTTTATCAATTTATCTAAAGTTTATGAGGCAGCATTAAAAAGGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTATCAATTTATCTAAAGTTTATGAGGCAGCATTAAAAAGGAAA  592

seq1  TGTCCGCACTTAAAGCATCAGACCTTATGTAGGTCCATGTTTTTAGTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGCACTTAAAGCATCAGACCTTATGTAGGTCCATGTTTTTAGTTAT  642

seq1  TACTGAAAAGTAAAATAATTGCCAGGATCTTGATTTCCTCATCTGTAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAAGTAAAATAATTGCCAGGATCTTGATTTCCTCATCTGTAAAC  692

seq1  TGGAGCCCAGATTATCTGTACTGTTTACATAACATAACTATGAGGATCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCAGATTATCTGTACTGTTTACATAACATAACTATGAGGATCAA  742

seq1  GAAAATCATAGGAATGCTTTTAGCAGTGAAAATAAAGATATGAACAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCATAGGAATGCTTTTAGCAGTGAAAATAAAGATATGAACAGAAA  792

seq1  ACATTATTATGGGAAAGTATCCTAATATAAACACCTCGATGCTGCCCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTATGGGAAAGTATCCTAATATAAACACCTCGATGCTGCCCTTC  842

seq1  CTTTCTGTAGAGCAGGGGTCAGCGCTGAGAGAGAAACCCTAAGCCTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTAGAGCAGGGGTCAGCGCTGAGAGAGAAACCCTAAGCCTTCAG  892

seq1  AGTGTGGCTGCCTCCGACTCCCTTTGCTAGCACGCTCTCCAGAAAGAGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCTGCCTCCGACTCCCTTTGCTAGCACGCTCTCCAGAAAGAGGT  942

seq1  GCTGGTAATTTCACTTTGAACCCCGGCTTTGGAATGTTTCCTGATAGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAATTTCACTTTGAACCCCGGCTTTGGAATGTTTCCTGATAGTTT  992

seq1  GAAAAAAACCCAAGGATTTCTAAGTTGAATCTCAAATCAGGGCAAGTCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACCCAAGGATTTCTAAGTTGAATCTCAAATCAGGGCAAGTCTC  1042

seq1  TGAGCTCGCGGTGAACCAGGCAGCTCAGCCGGATCCAGGTGAACGGGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCGCGGTGAACCAGGCAGCTCAGCCGGATCCAGGTGAACGGGCTG  1092

seq1  TCATCCTGTTCCAACCATTTCCAAAGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  TCATCCTGTTCCAACCATTTCCAAAGAATTC  1123