BAC Information

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BAC

Clone NameB6Ng01-043E20
Chromosome1 (Build37)
Map Location 88,280,835 - 88,451,387
singlet/doubletdoublet
Overlap geneNmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82
Downstream geneCops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E20.bB6Ng01-043E20.g
ACCDH869408DH869409
length1,0601,159
definitionDH869408|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E20, 5' end.DH869409|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,450,323 - 88,451,387)(88,280,835 - 88,282,338)
sequence
gaattcaatccccagaaaccacattgtagaacaagagaaccaacttccac
aagtcatcattggactccacttgagtacccacacacatacacaaatcaaa
taaatgtaatttaaatgtttgaaatagggcataagttttagaagttatga
cctaggagctggagagacagctcaacagttaaggcagatactgatcttga
agagaatttgagttcggttctagcactcatgtcaagcacctgacagcctc
ctatagctttgcctccagggaatcctatgctgtcttttggccaacataat
aggacagaactaatacccatgacatgacatgcacacacaccacaaaagtg
gaaaaaaaaagcagttaaggtgtactgggaatgttttgtacattcaggct
actataatgaagtacacacacaaaaaaaattgtttttagacatggtacta
gaaaaatggctcatcagttaagaacatttgctacttttgcagaagaacca
ggtttggcaactcctaaccacctataactgcagttccagggggaatctga
tgatcctttcttgggcaccagtatgagcctacaaacactcaggtgcgtgt
gagcgcgcgagcgagagcgcacgcacaaataaattgataggagggttggg
gcagataaggtggctcagtgagtgaaggcgcttgctgccaaacctgatga
cctgagttcagtctagtttctggaactcacatgtcaggaaggggagaact
aagactccgcccatcagttgtcctctggcttcctcacatgcagcataaca
ctcacatataaacgcacagaatagacaaataaaatgagaaagcttttaga
gatgtgtgtgttcagatacatgcatattggagaacaactttgagttcccc
aaggccaacataataggacaaactgatacacgtgacatgacatgcatacc
cacacacaaaatgaggggaaaaagcagctaagtgtactgggaatattttg
tacattcaggctatataatgagtacaacagataaggtgtctttatacaca
acagaaatgc
gaattccaggatgtccagggctacacagagaaaccctgtcttgaaaacag
agagagagagagaagccagctgactatagactgaaaacatgagccataaa
aatcttgtttatttgtttttcagtgggagttttattgtgtagcccaggct
agctctagcttcaaactcctgatcttccagtcctcacttcccaggtgtgc
cagtgtgcccaactctctgccctttaagttgtctttgtcatataaaactg
aatcatgaaatagctctctaccatctcctcccctggacacctggtgccct
gagaagcccaggacaccagttagcaggttgtctgcagggtcactgggcag
tccctagctgtggacaccaggtctctcaagacaagacccagcaacttgca
gcaggacacagttcatccattaatggggtccttcctcagcaccaggttgt
ccctgggactcagggtggcatgaaatgtcagggaaatactgcccttgacc
acctagtcccctttgcggagcttcatgtcctcatttgattttcattgctt
caaactcctgatcttccagtcctcacttcccaggtgtgccagtgtgccca
actccatgaccaaagctaccttggggatgaaagggtttattcagcttata
gtccatcatcaagggaaactaaggcaggaacctggagacaggaacctgga
ggcaggaacctggagacaggaactggagcggaagccccaggggaaatctg
gcttactggcttgctcagcttattttcttagacaacctgggaccacctgc
ccagaagtggcactgcccttggtgggttgggccctgtgacatcagtcatt
aatcatgaaaatgtcccacagacaagtccacaggtcagtccgatggatgt
aattcttcggctgatgttccctctctcagtgactctagtttctgtcaagc
tgacaaagactaaccaacaccctgtctctgcacagccgggtatggtcttt
agtcagttcctgctgcttcttccagatcttccctggcttacaagaactta
gcaagtgtgtccccaggcagccaaggtagcctgtctgtcagtgagaaagg
caggattggcgcttgcgcatagtgacctatctgtttcagagcaaagctaa
ggaactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88450323_88451387
seq2: B6Ng01-043E20.b_47_1106 (reverse)

seq1  GCATTTCTGTTGTGTAT-AAGACACCCTATCTGTTGTACTTCATTATATT  49
      ||||||||||||||||| |||||||| |||||||||||| |||||||| |
seq2  GCATTTCTGTTGTGTATAAAGACACCTTATCTGTTGTAC-TCATTATA-T  48

seq1  AGCCTGAATGTACAAAATATTCCCAGTACACCTTAGCTGCTTTTTTCCCC  99
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  AGCCTGAATGTACAAAATATTCCCAGTACA-CTTAGCTGC-TTTTTCCCC  96

seq1  TCATTTTTGTGTGTGGGTATGCATGTCATGTCACGTGTATCAGTTTTGTC  149
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCA-TTTTGTGTGTGGGTATGCATGTCATGTCACGTGTATCAG-TTTGTC  144

seq1  CTATTATGTTGGCCTTGGGGAACTCAAAGTTGTTCTCCAATATGCATGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTTGGCCTTGGGGAACTCAAAGTTGTTCTCCAATATGCATGTA  194

seq1  TCTGAACACACACATCTCTAAAAGCTTTCTCATTTTATTTGTCTATTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACACACACATCTCTAAAAGCTTTCTCATTTTATTTGTCTATTCTG  244

seq1  TGCGTTTATATGTGAGTGTTATGCTGCATGTGAGGAAGCCAGAGGACAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTATATGTGAGTGTTATGCTGCATGTGAGGAAGCCAGAGGACAAC  294

seq1  TGATGGGCGGAGTCTTAGTTCTCCCCTTCCTGACATGTGAGTTCCAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCGGAGTCTTAGTTCTCCCCTTCCTGACATGTGAGTTCCAGAAA  344

seq1  CTAGACTGAACTCAGGTCATCAGGTTTGGCAGCAAGCGCCTTCACTCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGAACTCAGGTCATCAGGTTTGGCAGCAAGCGCCTTCACTCACT  394

seq1  GAGCCACCTTATCTGCCCCAACCCTCCTATCAATTTATTTGTGCGTGCGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCTTATCTGCCCCAACCCTCCTATCAATTTATTTGTGCGTGCGC  444

seq1  TCTCGCTCGCGCGCTCACACGCACCTGAGTGTTTGTAGGCTCATACTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTCGCGCGCTCACACGCACCTGAGTGTTTGTAGGCTCATACTGGT  494

seq1  GCCCAAGAAAGGATCATCAGATTCCCCCTGGAACTGCAGTTATAGGTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAAAGGATCATCAGATTCCCCCTGGAACTGCAGTTATAGGTGGT  544

seq1  TAGGAGTTGCCAAACCTGGTTCTTCTGCAAAAGTAGCAAATGTTCTTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTGCCAAACCTGGTTCTTCTGCAAAAGTAGCAAATGTTCTTAAC  594

seq1  TGATGAGCCATTTTTCTAGTACCATGTCTAAAAACAATTTTTTTTGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCCATTTTTCTAGTACCATGTCTAAAAACAATTTTTTTTGTGTG  644

seq1  TGTACTTCATTATAGTAGCCTGAATGTACAAAACATTCCCAGTACACCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCATTATAGTAGCCTGAATGTACAAAACATTCCCAGTACACCTT  694

seq1  AACTGCTTTTTTTTTCCACTTTTGTGGTGTGTGTGCATGTCATGTCATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTTTTTTTCCACTTTTGTGGTGTGTGTGCATGTCATGTCATGG  744

seq1  GTATTAGTTCTGTCCTATTATGTTGGCCAAAAGACAGCATAGGATTCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTTCTGTCCTATTATGTTGGCCAAAAGACAGCATAGGATTCCCT  794

seq1  GGAGGCAAAGCTATAGGAGGCTGTCAGGTGCTTGACATGAGTGCTAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAGCTATAGGAGGCTGTCAGGTGCTTGACATGAGTGCTAGAAC  844

seq1  CGAACTCAAATTCTCTTCAAGATCAGTATCTGCCTTAACTGTTGAGCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAAATTCTCTTCAAGATCAGTATCTGCCTTAACTGTTGAGCTGT  894

seq1  CTCTCCAGCTCCTAGGTCATAACTTCTAAAACTTATGCCCTATTTCAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCTCCTAGGTCATAACTTCTAAAACTTATGCCCTATTTCAAAC  944

seq1  ATTTAAATTACATTTATTTGATTTGTGTATGTGTGTGGGTACTCAAGTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTACATTTATTTGATTTGTGTATGTGTGTGGGTACTCAAGTGG  994

seq1  AGTCCAATGATGACTTGTGGAAGTTGGTTCTCTTGTTCTACAATGTGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATGATGACTTGTGGAAGTTGGTTCTCTTGTTCTACAATGTGGTT  1044

seq1  TCTGGGGATTGAATTC  1065
      ||||||||||||||||
seq2  TCTGGGGATTGAATTC  1060

seq1: chr1_88280835_88282338
seq2: B6Ng01-043E20.g_67_1225

seq1  GAATTCCAGGATGTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATGTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAACAG  50

seq1  AGAGAGAGAGAGAAGCCAGCTGACTATAGACTGAAAACATGAGCCATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAGCCAGCTGACTATAGACTGAAAACATGAGCCATAAA  100

seq1  AATCTTGTTTATTTGTTTTTCAGTGGGAGTTTTATTGTGTAGCCCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTTATTTGTTTTTCAGTGGGAGTTTTATTGTGTAGCCCAGGCT  150

seq1  AGCTCTAGCTTCAAACTCCTGATCTTCCAGTCCTCACTTCCCAGGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGCTTCAAACTCCTGATCTTCCAGTCCTCACTTCCCAGGTGTGC  200

seq1  CAGTGTGCCCAACTCTCTGCCCTTTAAGTTGTCTTTGTCATATAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCCCAACTCTCTGCCCTTTAAGTTGTCTTTGTCATATAAAACTG  250

seq1  AATCATGAAATAGCTCTCTACCATCTCCTCCCCTGGACACCTGGTGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAAATAGCTCTCTACCATCTCCTCCCCTGGACACCTGGTGCCCT  300

seq1  GAGAAGCCCAGGACACCAGTTAGCAGGTTGTCTGCAGGGTCACTGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCAGGACACCAGTTAGCAGGTTGTCTGCAGGGTCACTGGGCAG  350

seq1  TCCCTAGCTGTGGACACCAGGTCTCTCAAGACAAGACCCAGCAACTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCTGTGGACACCAGGTCTCTCAAGACAAGACCCAGCAACTTGCA  400

seq1  GCAGGACACAGTTCATCCATTAATGGGGTCCTTCCTCAGCACCAGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACACAGTTCATCCATTAATGGGGTCCTTCCTCAGCACCAGGTTGT  450

seq1  CCCTGGGACTCAGGGTGGCATGAAATGTCAGGGAAATACTGCCCTTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGACTCAGGGTGGCATGAAATGTCAGGGAAATACTGCCCTTGACC  500

seq1  ACCTAGTCCCCTTTGCGGAGCTTCATGTCCTCATTTGATTTTCATTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTCCCCTTTGCGGAGCTTCATGTCCTCATTTGATTTTCATTGCTT  550

seq1  CAAACTCCTGATCTTCCAGTCCTCACTTCCCAGGTGTGCCAGTGTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTGATCTTCCAGTCCTCACTTCCCAGGTGTGCCAGTGTGCCCA  600

seq1  ACTCCATGACCAAAGCTACCTTGGGGATGAAAGGGTTTATTCAGCTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGACCAAAGCTACCTTGGGGATGAAAGGGTTTATTCAGCTTATA  650

seq1  GTCCATCATCAAGGGAAACTAAGGCAGGAACCTGGAGACAGGAACCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATCAAGGGAAACTAAGGCAGGAACCTGGAGACAGGAACCTGGA  700

seq1  GGCAGGAACCTGGAGACAGGAACTGGAGCGGAAGCCCCAGGGGAAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACCTGGAGACAGGAACTGGAGCGGAAGCCCCAGGGGAAATCTG  750

seq1  GCTTACTGGCTTGCTCAGCTTATTTTCTTAGACAACCTGGGACCACCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGGCTTGCTCAGCTTATTTTCTTAGACAACCTGGGACCACCTGC  800

seq1  CCAGAAGTGGCACTGCCCTTGGTGGGTTGGGCCCTGTGACATCAGTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTGGCACTGCCCTTGGTGGGTTGGGCCCTGTGACATCAGTCATT  850

seq1  AATCATGAAAATGTCCCACAGACAAGTCCACAGGTCAGTCCGATGGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAAAATGTCCCACAGACAAGTCCACAGGTCAGTCCGATGGATGT  900

seq1  AATTCTTCGGCTGATGTTCCCTCTCTCAGGTGACTCTAGTTTCTGTCAAG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATTCTTCGGCTGATGTTCCCTCTCTCA-GTGACTCTAGTTTCTGTCAAG  949

seq1  CTGACAAAGACTAACCAACACCCTGTCTCTGCACAGCCGTGTATGGTCCT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CTGACAAAGACTAACCAACACCCTGTCTCTGCACAGCCGGGTATGGT-CT  998

seq1  TAAGTCAGTTCCTGCTGCTTCTTCCAGATCTCCCCTGGCTAACAGGATC-  1049
      | ||||||||||||||||||||||||||||| |||||||| ||| || | 
seq2  TTAGTCAGTTCCTGCTGCTTCTTCCAGATCTTCCCTGGCTTACAAGAACT  1048

seq1  TAGCATGTGTTCCCCCAGGGCAGCCAGGGTAGCCTGTCTGCAGGTGAGAA  1099
      ||||| ||||  ||||| |||||||| |||||||||||||   |||||||
seq2  TAGCAAGTGTGTCCCCA-GGCAGCCAAGGTAGCCTGTCTGTCAGTGAGAA  1097

seq1  AGGCCAGGAGT-GCGC-TGCGCATAGGTTGGCCCTATCTGTTTCAG-GAC  1146
      ||| ||||| | |||| |||||||||    | |||||||||||||| |  
seq2  AGG-CAGGATTGGCGCTTGCGCATAG---TGACCTATCTGTTTCAGAGCA  1143

seq1  AAGCAAAGGACCTGTCCTTGACAGCTTGGAGCAGGACCATGAGAAGATCA  1196
      |||| ||||| |||||                                  
seq2  AAGCTAAGGAACTGTC----------------------------------  1159

seq1  GAGAGAAAGCAGGGTTTGGGAGTGGTGCAGATAATCTGAAACCAAGTGGT  1246
                                                        
seq2  --------------------------------------------------  1159

seq1  TGACTTTGTTGTACACACAGATGAAAACACAGCAAGCTCCCTTCAAAACG  1296
                                                        
seq2  --------------------------------------------------  1159

seq1  TGACTTGGGCAAGCAAGCACACCTTTTATTTTTGCAAGCAAGGAACCAAA  1346
                                                        
seq2  --------------------------------------------------  1159

seq1  GCCTCTTAGAAAGCCAGGGTGATTTGCTTGTTGCCACAAGGAAACATGGT  1396
                                                        
seq2  --------------------------------------------------  1159

seq1  GACAAAGGCTGAGGTCAGGTCCAGGTCCCCTGGATCCCTGGGAACCCCTA  1446
                                                        
seq2  --------------------------------------------------  1159

seq1  CCACCTGACAGCTTGATCAGGCCCGAATCTCGGTGCAGAATGAGAGCCAG  1496
                                                        
seq2  --------------------------------------------------  1159

seq1  GAACTGTC  1504
              
seq2  --------  1159