BAC Information

Click to search

BAC

Clone NameB6Ng01-044E23
Chromosome1 (Build37)
Map Location 170,026,295 - 170,027,272
singlet/doubletsinglet
Overlap genenone
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genePbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044E23.bB6Ng01-044E23.g
ACCDH870100DH870101
length430974
definitionDH870100|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E23, 5' end.DH870101|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttcagtttgtatttttcttattgcttctatttccattttcatgtcttaaa
tgatttattcatttcctacaactgtttggtttttttttcctggcattctt
taaaggatttattcactttcttcaattgtttatttgtgtttttctatatt
tcattaaggggttcatttatttcctctttaaggacctctatcatcttcat
ataagtatttttaagatctttttccttaggtttcagctatcatcttcata
taagtatttttaagatctctttccttaggtttcagctattctgggcctgc
tatggtagaataactatgctctagtggaggcatataatccaggttgttat
tgattatgttcttatgctggcatctaagcatctgggtttggtgtgattat
agggtctaggtgatggtttatgggaggtca

gaattctctgtagtcaataacgctgagatgcggaagacagctgagtgacc
tctggttgcatctgtgcctcttggtttattgagggattcaagacttgatg
gtaaaaatcatcatattggttttcaaagctgcatttctgtaagtttgtat
aaactggaaagaatattgcttcacttgtgcaacgcggaaagaccatccag
tgcacattaagtctatatgatcttggttgaaggaagacattttgacaacg
gagaccactgagatgatgcaggggaagggagaagggttgatttggatgcc
atgggttacaagacccagctagatctttttttccaccaggagagacttta
gggcaagaacatgaagaagcatggtgataaaaagactgtcaccaagtgtg
cactttaagaccttcatgaaaattgcattcaagattgacagtggtccagc
ctaccctccccagctccatccacagcctcaccaatgcaggatacttatgc
ttccaaaggggtcatcttatggatggaggcagcacataatgaagaaacta
gagtgaaagagatttgtgtttctaagcttatatgagacacgccaacattt
caggacacacctagagctgaatccagggtgagtaactgggcaagaatctg
tctcaagttgtatacacaaatctgttgcaggagatttcaacctcctccct
tgatatttcagaattctttgcaatcaagagcaaggatgtatgatatgacc
atcagctacaatgggcccctgatgctgaagtggcagccaaaagcactgcc
aagcagtgtaggttcatctctaggctcaaaataccacggagagaggaagc
agcgttagattggaactgcaattaaggccgagacagggtggaaaatgtgt
acaacaagacttaaatatatattatttatgtgtgcttggcttcatggtgt
gtgtgtgtgtgtgtgtggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170026295_170027272
seq2: B6Ng01-044E23.g_70_1043 (reverse)

seq1  CACACACACACACACACACACACACACACCATGAAGCCAAGCACACCATA  50
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CACACAC-CACACACACACACACACACACCATGAAGCCAAGCACA-CATA  48

seq1  AATAATATATATTTAAGTCTTGTTGTACACCATTTTCCACCCTGTCTTCG  100
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  AATAATATATATTTAAGTCTTGTTGTACA-CATTTTCCACCCTGTC-TCG  96

seq1  GCCTTAATTGCAGTTCCAATCTAACGCTGCTTCCTCTCTCCGTGGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTGCAGTTCCAATCTAACGCTGCTTCCTCTCTCCGTGGTATTT  146

seq1  TGAGCCTAGAGATGAACCTACACTGCTTGGCAGTGCTTTTGGCTGCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGAGATGAACCTACACTGCTTGGCAGTGCTTTTGGCTGCCACT  196

seq1  TCAGCATCAGGGGCCCATTGTAGCTGATGGTCATATCATACATCCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCAGGGGCCCATTGTAGCTGATGGTCATATCATACATCCTTGCT  246

seq1  CTTGATTGCAAAGAATTCTGAAATATCAAGGGAGGAGGTTGAAATCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGCAAAGAATTCTGAAATATCAAGGGAGGAGGTTGAAATCTCCT  296

seq1  GCAACAGATTTGTGTATACAACTTGAGACAGATTCTTGCCCAGTTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGATTTGTGTATACAACTTGAGACAGATTCTTGCCCAGTTACTCA  346

seq1  CCCTGGATTCAGCTCTAGGTGTGTCCTGAAATGTTGGCGTGTCTCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATTCAGCTCTAGGTGTGTCCTGAAATGTTGGCGTGTCTCATATA  396

seq1  AGCTTAGAAACACAAATCTCTTTCACTCTAGTTTCTTCATTATGTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGAAACACAAATCTCTTTCACTCTAGTTTCTTCATTATGTGCTGC  446

seq1  CTCCATCCATAAGATGACCCCTTTGGAAGCATAAGTATCCTGCATTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCATAAGATGACCCCTTTGGAAGCATAAGTATCCTGCATTGGTG  496

seq1  AGGCTGTGGATGGAGCTGGGGAGGGTAGGCTGGACCACTGTCAATCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGATGGAGCTGGGGAGGGTAGGCTGGACCACTGTCAATCTTGA  546

seq1  ATGCAATTTTCATGAAGGTCTTAAAGTGCACACTTGGTGACAGTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTTTCATGAAGGTCTTAAAGTGCACACTTGGTGACAGTCTTTTT  596

seq1  ATCACCATGCTTCTTCATGTTCTTGCCCTAAAGTCTCTCCTGGTGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGCTTCTTCATGTTCTTGCCCTAAAGTCTCTCCTGGTGGAAAA  646

seq1  AAAGATCTAGCTGGGTCTTGTAACCCATGGCATCCAAATCAACCCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTAGCTGGGTCTTGTAACCCATGGCATCCAAATCAACCCTTCTC  696

seq1  CCTTCCCCTGCATCATCTCAGTGGTCTCCGTTGTCAAAATGTCTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTGCATCATCTCAGTGGTCTCCGTTGTCAAAATGTCTTCCTTC  746

seq1  AACCAAGATCATATAGACTTAATGTGCACTGGATGGTCTTTCCGCGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGATCATATAGACTTAATGTGCACTGGATGGTCTTTCCGCGTTGC  796

seq1  ACAAGTGAAGCAATATTCTTTCCAGTTTATACAAACTTACAGAAATGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAAGCAATATTCTTTCCAGTTTATACAAACTTACAGAAATGCAG  846

seq1  CTTTGAAAACCAATATGATGATTTTTACCATCAAGTCTTGAATCCCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAACCAATATGATGATTTTTACCATCAAGTCTTGAATCCCTCAA  896

seq1  TAAACCAAGAGGCACAGATGCAACCAGAGGTCACTCAGCTGTCTTCCGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGAGGCACAGATGCAACCAGAGGTCACTCAGCTGTCTTCCGCA  946

seq1  TCTCAGCGTTATTGACTACAGAGAATTC  978
      ||||||||||||||||||||||||||||
seq2  TCTCAGCGTTATTGACTACAGAGAATTC  974


| Home | SequenceCutter | Blast | Download |