BAC Information

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BAC

Clone NameB6Ng01-044J03
Chromosome1 (Build37)9 (Build37)
Map Location 90,162,089 - 90,163,2813,306,107 - 3,307,034
singlet/doubletsingletsinglet
Overlap gene6430706D22Rik, LOC100038822
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J03.bB6Ng01-044J03.g
ACCDH870286DH870287
length1,1341,117
definitionDH870286|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J03, 5' end.DH870287|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,162,089 - 90,163,281)(3,306,107 - 3,307,034)
sequence
gaattcttttttaagctcatcatagttatccttcccacagcctggagagc
ctatgcatggtgctgaaatagctgtactgggccacactgccttaccagta
ggttcagaattgtgctcttgaaggccagagctcagctgagaatggctggg
gctccgtgacgggctgccctctggagagggacagctccttagaagacagc
tctttgttttgacagactttccatttcccctcaggtcttctaaagcttca
cctggcctttctgtcttttctctgccgaaaggtgaactgggcctgcaggt
ttctacatcctgacggctgcctgggctcttagaaccacttctgtacacat
cgacagcccaagactctgtggggtcagtcaggcgaggctgtttcccagaa
gacaggcaatattcctgatgaagcttgtcaaatttgattttaatctctct
ataccacttctctactggacttggaagcatccttggtctgggaaccacct
tgacgggtgaaattagccactgtaatgtcatcaccctattttctcgctca
cggtttaagtccaagtccttctgcggcatcatctggagctccttccaagc
tggactggatttatggacttggcgtttgcttccttcaagagaaacgcttt
tcagttctaagcctgtcttgtggggagcaacgtgcagtaaattcccgtag
tctcttaatattccggcctctttcccgggctctgagcaggacgcaggccc
cttcctggcactcctcttgcgtgagggtctcctccggagcttccagctct
ggttgatgtaggtcttggtggagatgatgcaggatggctttgagcgcagc
agcctactcatggaatgcatcatgccttcatacaaatcgctgattgtcac
attgcaaaggtcatcaacctcaaaggactggctgcttacgctgtgctgct
ggtcccaagtaaaggagaggccatcactctagccacaatggccatatcag
ctgggcaagggtatgagggaccctggactctagagacaagcagattattc
agaccaccagagctctttgcagagatagcatcctgcatcctaaggaagaa
atgacaagtcagagaaaccaccacttcatccacc
gaattctatactgaggaaattcaaatggctgagaaactcctaaagaaatg
ttcaacattcttagggaaatgcacatcaaatcaaccctggtattccacct
cacaccagtcagaatggctaagataaaaaactaagctgacagcagatgct
ggtgaggatgtggagaaatgtgtgggattgcaatctggtacaaccactct
ggaaatcagttttctggttcctcagaaaattggagattctactacctgag
gatccagctataccactcctgggcatgtatccagaagatgctccaacaag
taatgaggacacatgctcctctgtgtcattagcagctatatttattatag
ctagaagttgcaagtaacacagatgtccttcaacagaggactggatacag
ataaaggggtaccacttagctattaaaaacactgactacttgaaatttgt
ggacaaatggatggatctagaaaatatcatcctgagtgaggtaactcagt
cacaaaagaacacacatgatatgtactcactgttaagtggatactaggca
aatggcatgaactatccatgattcaactcatataccacatgaagctgaac
tggaaagaacaccaaagggagtatgctttagtacctcttagactttgaca
aatgctttaattcaagaataatctcacaagtgccaagagttttgatggcc
aaaattgcacaggtccatgcaggaggaatgacaaatggctttagaacaca
tggaagatggtcaactggttagttagcacaaccactatgggtgcaccttg
gttaagaacccatggattgtgtcctgaagatgtcatgctgttgttatctg
tttctactctgcatgctgtaaccacttccttcttaatctaagaaatataa
ggattagcaatggtcttgccactcctcaccattcagtatcttggcactca
caataataatacacatatgtagcagagacttccttgactgacagacttct
ctgggacagatgttatctactcctgtagaggtttgctttctcaaatcggg
aattgagtgcctgggaaaggaagccacatttcatagtttcttgaaggtgg
atgagatgaagattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90162089_90163281
seq2: B6Ng01-044J03.b_45_1178

seq1  GAATTCTTTTTTAAGCTCATCATAGTTATCCTTCCCACAGCCTGGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTAAGCTCATCATAGTTATCCTTCCCACAGCCTGGAGAGC  50

seq1  CTATGCTTGGTGCTGAAATAGCTGTACTGGGCCACACTGCCTTACCAGTA  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATGGTGCTGAAATAGCTGTACTGGGCCACACTGCCTTACCAGTA  100

seq1  GGTTCAGAATTGTGCTCTTGAAGGCCAGAGCTCAGCTGAGAATGGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAATTGTGCTCTTGAAGGCCAGAGCTCAGCTGAGAATGGCTGGG  150

seq1  GCTCCGTGACGGGCTGCCCTCTGGAGAGGGACAGCTCCTTAGAAGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTGACGGGCTGCCCTCTGGAGAGGGACAGCTCCTTAGAAGACAGC  200

seq1  TCTTTGTTTTGACAGACTTTCCATTTCCCCTCAGGTCTTCTAAAGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTGACAGACTTTCCATTTCCCCTCAGGTCTTCTAAAGCTTCA  250

seq1  CCTGGCCTTTCTGTCTTTTCTCTGCCGAAAGGTGAACTGGGCCTGCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTTCTGTCTTTTCTCTGCCGAAAGGTGAACTGGGCCTGCAGGT  300

seq1  TTCTACATCCTGACGGCTGCCTGGGCTCTTAGAACCACTTCTGTACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATCCTGACGGCTGCCTGGGCTCTTAGAACCACTTCTGTACACAT  350

seq1  CGACAGCCCAAGACTCTGTGGGGTCAGTCAGGCGAGGCTGTTTCCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCCCAAGACTCTGTGGGGTCAGTCAGGCGAGGCTGTTTCCCAGAA  400

seq1  GACAGGCAATATTCCTGATGAAGCTTGTCAAATTTGATTTTAATCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAATATTCCTGATGAAGCTTGTCAAATTTGATTTTAATCTCTCT  450

seq1  ATACCACTTCTCTACTTGACTTGGAAGCATCCTTGGTCTGGGAACCACCT  500
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATACCACTTCTCTACTGGACTTGGAAGCATCCTTGGTCTGGGAACCACCT  500

seq1  TGACGGGTGAAATTAGCCACTGTAATGTCATCACCCTATTTTCTCGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGGTGAAATTAGCCACTGTAATGTCATCACCCTATTTTCTCGCTCA  550

seq1  CGGTTTAAGTCCAAGTCCTTCTGCGGCATCATCTGGAGCTCCTTCCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTAAGTCCAAGTCCTTCTGCGGCATCATCTGGAGCTCCTTCCAAGC  600

seq1  TGGACTGGATTTATGGACTTGGCGTTTGCTTCCTTCAAGAGAAACGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGATTTATGGACTTGGCGTTTGCTTCCTTCAAGAGAAACGCTTT  650

seq1  TCAGTTCTAAGCCTGTCTTGTGGGGAGCAACGTGCAGTAAATTCCCGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTAAGCCTGTCTTGTGGGGAGCAACGTGCAGTAAATTCCCGTAG  700

seq1  TCTCTTAATATTCCGGCCTCTTTCCCGGGCTCTGAGCAGGACGCAGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATATTCCGGCCTCTTTCCCGGGCTCTGAGCAGGACGCAGGCCC  750

seq1  CTTCCTGGCACTCCTCTGGGAGGGCTTGCTCCGGGGGCAGTGTGTCCTGT  800
      |||||||||||||||                                   
seq2  CTTCCTGGCACTCCT-----------------------------------  765

seq1  TCTTGTGCAGCCCCTGCTTGCGTGAGGGTCTCCTCCGGAGCTTCCAGCTC  850
                      ||||||||||||||||||||||||||||||||||
seq2  ----------------CTTGCGTGAGGGTCTCCTCCGGAGCTTCCAGCTC  799

seq1  TGGTTGATGTAGGTCTTGGTGGAGATGATGCAGGATGGCTTTGAGCGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATGTAGGTCTTGGTGGAGATGATGCAGGATGGCTTTGAGCGCAG  849

seq1  CAGCCTACTCATGGAATGCATCATGCCTTCATACAAATCGCTGATTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACTCATGGAATGCATCATGCCTTCATACAAATCGCTGATTGTCA  899

seq1  CATTGCAAAGGTCATCAACCTCAAAGGACTGGCTGCTTACGCTGTTGCTG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATTGCAAAGGTCATCAACCTCAAAGGACTGGCTGCTTACGCTG-TGCTG  948

seq1  CTGGTCCCAAGT-AAGGAGAGGCCATCACTTCTAGCCACAATGGCCATAT  1049
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CTGGTCCCAAGTAAAGGAGAGGCCATCAC-TCTAGCCACAATGGCCATAT  997

seq1  CAGCTGGGCAAGGGTATGAGGGACCCTGGCCTCTAGAGGACAAAGCAGAT  1099
      ||||||||||||||||||||||||||||| ||||||| ||| ||||||||
seq2  CAGCTGGGCAAGGGTATGAGGGACCCTGGACTCTAGA-GAC-AAGCAGAT  1045

seq1  ACTTCAGGACCACCAGAGCTCTTTGCAGAGATAGCATCCTGGCATCCTAG  1149
        |||| ||||||||||||||||||||||||||||||||| |||||||| 
seq2  TATTCA-GACCACCAGAGCTCTTTGCAGAGATAGCATCCT-GCATCCTAA  1093

seq1  GAGAGAAATAGACAAAGTCAAGAGAAACCACCATTCAATCCACC  1193
      |  |||||| ||| ||||| ||||||||||||| |  |||||||
seq2  GGAAGAAAT-GAC-AAGTC-AGAGAAACCACCACTTCATCCACC  1134

seq1: chr9_3306107_3307034
seq2: B6Ng01-044J03.g_250_1185

seq1  AATCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATT  50
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AATCTGGTACAACCACTCTGGAAATCAGTTTTCTGGTTCCTCAGAAAATT  50

seq1  GGAGATAGTACTACCTGAGGACCCAGCTATACCACTCCTGGGCATGTATC  100
      ||||||  ||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGATTCTACTACCTGAGGATCCAGCTATACCACTCCTGGGCATGTATC  100

seq1  CAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTGTGTTCATA  150
      ||||||||||||||||| ||||| |||||||||||||| ||||||   ||
seq2  CAGAAGATGCTCCAACAAGTAATGAGGACACATGCTCCTCTGTGTCATTA  150

seq1  GCAGCCATATTTATAATAGCCAGAAGCTGCAAGTAACCCAGATGTCCTTC  200
      ||||| |||||||| ||||| ||||| |||||||||| ||||||||||||
seq2  GCAGCTATATTTATTATAGCTAGAAGTTGCAAGTAACACAGATGTCCTTC  200

seq1  AACAGAGGAATGGATACAGAAAATGTGGTACTACTTAGCTATTAAAAACA  250
      ||||||||| |||||||||| || | ||||| ||||||||||||||||||
seq2  AACAGAGGACTGGATACAGATAAAGGGGTACCACTTAGCTATTAAAAACA  250

seq1  CTGACTACATGAAATTTGTGGACAAATGGATGGATCAAGAAAATATCATC  300
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CTGACTACTTGAAATTTGTGGACAAATGGATGGATCTAGAAAATATCATC  300

seq1  CTGAGTGAGGTAACTCAGTCACAAAAGAACACACATGATATGTACTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAGGTAACTCAGTCACAAAAGAACACACATGATATGTACTCACT  350

seq1  GATAAGTGAATATTAGGCAAAGAG-----------CATGATTCAACTCAT  389
      | |||||| ||| ||||||||  |           |||||||||||||||
seq2  GTTAAGTGGATACTAGGCAAATGGCATGAACTATCCATGATTCAACTCAT  400

seq1  GGACCACATAAAGCTGAAGAGGAAAGAACACCAAAGAGTGGATGCTTTAG  439
        ||||||| ||||||||  |||||||||||||||| | | |||||||||
seq2  ATACCACATGAAGCTGAACTGGAAAGAACACCAAAGGGAGTATGCTTTAG  450

seq1  TACTACTTAGACCTTGACAAATGTTTTATTTCAAGAGTAATGTGACAAAT  489
      |||  ||||||| |||||||||| |||| ||||||| |||| | |||| |
seq2  TACCTCTTAGACTTTGACAAATGCTTTAATTCAAGAATAATCTCACAAGT  500

seq1  GCCAAGAGTTTTGATGGCCAAATTTGCACAGGTACATGCAGGAGGAATGA  539
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  GCCAAGAGTTTTGATGGCCAAAATTGCACAGGTCCATGCAGGAGGAATGA  550

seq1  CAAATGGCTTTAGAACTCATGGAAGATGGCCCACTG----CTTAGCACAA  585
      |||||||||||||||| |||||||||||| | ||||     |||||||||
seq2  CAAATGGCTTTAGAACACATGGAAGATGGTCAACTGGTTAGTTAGCACAA  600

seq1  CCACTATGGGTGCACCTTGGTTAAGGTCCCATGGACTGTGTCCTGAAGAT  635
      |||||||||||||||||||||||||  |||||||| ||||||||||||||
seq2  CCACTATGGGTGCACCTTGGTTAAGAACCCATGGATTGTGTCCTGAAGAT  650

seq1  GTCATGC---TGTTATCTGTTTCTACTCTGCTTGCTGTCACCACTTCCCC  682
      |||||||   ||||||||||||||||||||| |||||| |||||||||  
seq2  GTCATGCTGTTGTTATCTGTTTCTACTCTGCATGCTGTAACCACTTCCTT  700

seq1  CTTAATCTAAGAAATATATGAAAACTGCAAATGGTCTTGCCACTCCTCAC  732
      ||||||||||||||||||  |  | |   |||||||||||||||||||||
seq2  CTTAATCTAAGAAATATA--AGGATTAGCAATGGTCTTGCCACTCCTCAC  748

seq1  TATGCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCAGGGGA  782
       || ||||||||||||||||||||||||||||||||||||||||| | ||
seq2  CATTCAGTATCTTGGCACTCACAATAATAATACACATATGTAGCA-GAGA  797

seq1  CTTCCTTGACTGACAGACTTCTCTGGGAGAGGGTGCATCTACTCCTGTAG  832
      |||||||||||||||||||||||||||| ||     ||||||||||||||
seq2  CTTCCTTGACTGACAGACTTCTCTGGGACAGATGTTATCTACTCCTGTAG  847

seq1  AGGTTTGCTGACCCAGGTATGGGGGATACTGGGTGGCTGGGAATGGGAAG  882
      |||||||||  | ||   || ||| ||  || ||| |||||||  |||||
seq2  AGGTTTGCTTTCTCA--AATCGGGAAT--TGAGTGCCTGGGAA-AGGAAG  892

seq1  CAACCTTTCATATGTAAATGAGTGGGGGATGAGATGAAGAATTCTG  928
      | || |||||||  |   |||  || ||||||||||||| ||||||
seq2  CCACATTTCATAGTTTCTTGA-AGGTGGATGAGATGAAG-ATTCTG  936