BAC Information

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BAC

Clone NameB6Ng01-044L19
Chromosome1 (Build37)
Map Location 75,154,986 - 75,260,984
singlet/doubletdoublet
Overlap geneZfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286
Downstream geneResp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L19.bB6Ng01-044L19.g
ACCDH870406DH870407
length1,160493
definitionDH870406|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L19, 5' end.DH870407|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,154,986 - 75,156,163)(75,260,486 - 75,260,984)
sequence
gaattccaggacaggacagccaaggctacacagagaatccctgaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagagagagaaaggaaggaaaaggaaagaaaagaaaagaaaagaaa
ggaaataaaacaaaattaagaagttagggatacatctcagtggtagaggg
tgtgcttagcatgcccaagggctaggttccgtcctaaataaattcatgag
tgaataaatgaatcatcctcaaagaaaattaattccatgaactgaatata
catacatactatgtatagactggtgttggtggggctcaaacccaagacct
aacttaatgttcggcaagtattctactactgactgatattcttagcgcta
gtcaatggactattaatacagcacattatatgcagggccttcccagaagt
tgggtgtttactttcagagcttagcaacagctctacagctcccattaaaa
ccaccaggatagccaggcagtggtgccgcacacctttaatcccaacactt
gggaggcagaggcaggcagatttctgaatttgtgaccatccaggtctaca
gagtgagttccaggacagttgggactacacagagaaaccctgtctggaaa
aacaaacaaatgacagaaaaacaaaaaacaaaaaaccagcaggatgtaga
cagtaagccactaaagagttctgacttggcaaacactcatttttattaag
ataagctaccataacagctgatatctaaaagaaagttagaagttgcaaaa
tacagagacttactaacaaggacattattcacttctgtaccaagagtgca
gattactgtctggggttagtcacctttacttccactttcctgactacttg
ttctaccatcttcagggaagtggcttgtcacttgctgtttgtttgttaat
ttgtttacaaggctgagtgctggatgtcacaagtattttgaagcagaaac
atttttcatcgaatgcatagtaagaactgatatggtagtccaagcctata
cggccagcacttgaggtttgccacaaatctaaggctagtctggcttcata
gcatgctatcaacaagcaacaaacaacaaacaaactgagctgagcacagt
gctctcttga
tagggaggaacctactatatggtggaggaggcttaggttgagtaggtccc
cggctaagagggggctcttacgccagtatgacgcaaataggcataagagc
cgggggtggagatgtcgtcattgcacgcctgcagttggccgggtcgcctc
aagaggggcaactagaccccgccttggaggtgggtggggagtggcagact
ccgcctaggctcctgggctgactcccaccaacgtcgccgagactctggcc
ggagagagagctcagagccgggaaggatgaggcgcccgcggcggcccggg
ggctccgggggctccgggggctccgggggcctccggctgctggtctgcct
gctgttgctgagcggccgccccgggggctgcagcgccatcagtgcccacg
gtcaggagaaaacttgatgggggcggggggaagcgtcgcaaaagcaagaa
gctcgggtaggataaatgttggaaggcggcgggggggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75154986_75156163
seq2: B6Ng01-044L19.b_47_1206

seq1  GAATTCCAGGACAGGACAGCCAAGGCTACACAGAGAATCCCTGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGACAGCCAAGGCTACACAGAGAATCCCTGAAAGAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  100

seq1  AAGAAAGAGAGAGAAAGGAAGGAAAAGGAAAGAAAAGAAAAGAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAAAGGAAGGAAAAGGAAAGAAAAGAAAAGAAAAGAAA  150

seq1  GGAAATAAAACAAAATTAAGAAGTTAGGGATACATCTCAGTGGTAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACAAAATTAAGAAGTTAGGGATACATCTCAGTGGTAGAGGG  200

seq1  TGTGCTTAGCATGCCCAAGGGCTAGGTTCCGTCCTAAATAAATTCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAGCATGCCCAAGGGCTAGGTTCCGTCCTAAATAAATTCATGAG  250

seq1  TGAATAAATGAATCATCCTCAAAGAAAATTAATTCCATGAACTGAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATGAATCATCCTCAAAGAAAATTAATTCCATGAACTGAATATA  300

seq1  CATACATACTATGTATAGACTGGTGTTGGTGGGGCTCAAACCCAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACTATGTATAGACTGGTGTTGGTGGGGCTCAAACCCAAGACCT  350

seq1  AACTTAATGTTCGGCAAGTATTCTACTACTGACTGATATTCTTAGCGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGTTCGGCAAGTATTCTACTACTGACTGATATTCTTAGCGCTA  400

seq1  GTCAATGGACTATTAATACAGCACATTATATGCAGGGCCTTCCCAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGACTATTAATACAGCACATTATATGCAGGGCCTTCCCAGAAGT  450

seq1  TGGGTGTTTACTTTCAGAGCTTAGCAACAGCTCTACAGCTCCCATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTACTTTCAGAGCTTAGCAACAGCTCTACAGCTCCCATTAAAA  500

seq1  CCACCAGGATAGCCAGGCAGTGGTGCCGCACACCTTTAATCCCAACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGATAGCCAGGCAGTGGTGCCGCACACCTTTAATCCCAACACTT  550

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAATTTGTGACCATCCAGGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAATTTGTGACCATCCAGGTCTACA  600

seq1  GAGTGAGTTCCAGGACAGTTGGGACTACACAGAGAAACCCTGTCTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGTTGGGACTACACAGAGAAACCCTGTCTGGAAA  650

seq1  AACAAACAAATGACAGAAAAACAAAAAACAAAAAACCAGCAGGATGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAATGACAGAAAAACAAAAAACAAAAAACCAGCAGGATGTAGA  700

seq1  CAGTAAGCCACTAAAGAGTTCTGACTTGGCAAACACTCATTTTTATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCCACTAAAGAGTTCTGACTTGGCAAACACTCATTTTTATTAAG  750

seq1  ATAAGCTACCATAACAGCTGATATCTAAAAGAAAGTTAGAAGTTGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTACCATAACAGCTGATATCTAAAAGAAAGTTAGAAGTTGCAAAA  800

seq1  TACAGAGACTTACTAACAAGGACATTATTCACTTCTGTACCAAGAGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGACTTACTAACAAGGACATTATTCACTTCTGTACCAAGAGTGCA  850

seq1  GATTACTGTCTGGGGTTAGTCACCTTTACTTCCACTTTTCCTGACTACTT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATTACTGTCTGGGGTTAGTCACCTTTACTTCCAC-TTTCCTGACTACTT  899

seq1  GTTCTACCATCTTCAGGGAAGTGGCTTGTCCACTTGCTGTTTTGTTTGTT  950
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GTTCTACCATCTTCAGGGAAGTGGCTTGT-CACTTGCTG-TTTGTTTGTT  947

seq1  AATTTGTTTACAAGGCTGAGTGCTGGATGTCACAAGTAATTTTGAAGCAG  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTTGTTTACAAGGCTGAGTGCTGGATGTCACAAGT-ATTTTGAAGCAG  996

seq1  AAACATTTTTTCATCGAAATGCATAGTAAGAACTGGATATGGTAGTCCAA  1050
      ||||| |||||||||| ||||||||||||||||| |||||||||||||||
seq2  AAACA-TTTTTCATCG-AATGCATAGTAAGAACT-GATATGGTAGTCCAA  1043

seq1  GCCTATACGGCCAGCACTTGAGGTTTGCCACAAATCTAAGGCTAGTCTGG  1100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCTATACGGCCAGCACTTGAGGTTTGCCACAAATCTAAGGCTAGTCT-G  1092

seq1  GCTTCATAGCATGGCTATTCCAAACAAAGCAAACAAACAAACAAACAAAA  1150
      |||||||||||| |||||  |||   |||| ||||||| ||||||| |||
seq2  GCTTCATAGCAT-GCTAT--CAA--CAAGC-AACAAAC-AACAAAC-AAA  1134

seq1  CTGAGCTGAGCAACAGTGCTCTCCTTGA  1178
      ||||||||||| |||||||||| |||||
seq2  CTGAGCTGAGC-ACAGTGCTCT-CTTGA  1160

seq1: chr1_75260486_75260984
seq2: B6Ng01-044L19.g_70_568 (reverse)

seq1  CACCCCCCCCCCCGCCGCCTTCCAACATTTATCCTACCCGAGCTTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCCCCGCCGCCTTCCAACATTTATCCTACCCGAGCTTCTTGC  50

seq1  TTTTGCGACGCTTCCCCCCGCCCCCATCAAGTTTTCTCCTGACCGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGACGCTTCCCCCCGCCCCCATCAAGTTTTCTCCTGACCGTGGGC  100

seq1  ACTGATGGCGCTGCAGCCCCCGGGGCGGCCGCTCAGCAACAGCAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGCGCTGCAGCCCCCGGGGCGGCCGCTCAGCAACAGCAGGCAGA  150

seq1  CCAGCAGCCGGAGGCCCCCGGAGCCCCCGGAGCCCCCGGAGCCCCCGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCCGGAGGCCCCCGGAGCCCCCGGAGCCCCCGGAGCCCCCGGGC  200

seq1  CGCCGCGGGCGCCTCATCCTTCCCGGCTCTGAGCTCTCTCTCCGGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGGGCGCCTCATCCTTCCCGGCTCTGAGCTCTCTCTCCGGCCAGA  250

seq1  GTCTCGGCGACGTTGGTGGGAGTCAGCCCAGGAGCCTAGGCGGAGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGGCGACGTTGGTGGGAGTCAGCCCAGGAGCCTAGGCGGAGTCTGC  300

seq1  CACTCCCCACCCACCTCCAAGGCGGGGTCTAGTTGCCCCTCTTGAGGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCACCCACCTCCAAGGCGGGGTCTAGTTGCCCCTCTTGAGGCGA  350

seq1  CCCGGCCAACTGCAGGCGTGCAATGACGACATCTCCACCCCCGGCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCAACTGCAGGCGTGCAATGACGACATCTCCACCCCCGGCTCTTA  400

seq1  TGCCTATTTGCGTCATACTGGCGTAAGAGCCCCCTCTTAGCCGGGGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTTGCGTCATACTGGCGTAAGAGCCCCCTCTTAGCCGGGGACCT  450

seq1  ACTCAACCTAAGCCTCCTCCACCATATAGTAGGTTCCTCCCTAGAATTC  499
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACCTAAGCCTCCTCCACCATATAGTAGGTTCCTCCCTAGAATTC  499