BAC Information

Click to search

BAC

Clone NameB6Ng01-046B14
Chromosome1 (Build37)
Map Location 4,510,105 - 4,511,199
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC664792, LOC619785, Rp1h, Sox17
Downstream geneLOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B14.bB6Ng01-046B14.g
ACCDH871365DH871366
length9981,076
definitionDH871365|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B14, 5' end.DH871366|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatttatatcaatacccatctagtttcttaagttctttatatac
tttgaatgttagttctctatctgatgtgtagttggtaaaaatttcttccc
attctttaggcttcccattctttaggcttccactttgtccaaatgacagt
gtcctttgccatgcagaagtgtctcaatttctgaggtctcatgtattaat
tgttgatgctagcgctagtgcttgtgctaatagtgttctgttcaaaaact
cgtttttgtgaaaataagttcaaagctgttctcactttctcttctatcag
gttcagtgtacctggtttatgttgaggtctttgaaccatttggtattgag
atttgtgccaactggggtatggatctgtttgggtttttctacatgcagct
gtccagtttgaccagcaccacttgtttaagatgctttcttttgtccactg
tgtatgtctgacttctttatcaaaaaccaggttccataagtgtgtgaact
tatgtctgggttttcagttccgttgactgaagtgtttatttctgttcaac
accatgctggtcttataactatagctctatagtacaacatggaatcagga
ctgattatccctcaaactgtttttttattcagcattgttttaataatcct
gggttttttatgtttctatatgaaactgaaaattgtcctttcaaaatctg
tgaataattgtgttgggattttgatggggattgcactgaatctagaattt
gtttttggtagaatgagctcttttacatatatatcctgccgatccatgag
catggaaatttttttcattttctgatatcttctttgatttcatcttaatg
tcttgaggttttattatacaagtctttcttttcttggtttgagtacctct
aagatattttatattatttgatgctattgtaaaagatgttgttccctgat
ttcttcttggattgttatttgtatataaggctactggggttttgtttg
gaattccatacactcatattacagttctgttcacttcctgctcttctctt
aatccatagccttcctagcctgaagaagtttgcctagcctcagtgttatg
gacttaatgagtgggggctgcaaggaagcaaaggagggagggaagtgaga
tgtgtcctgggttaacctttctgggctctttctgcacctgggttggccct
ccctgggagggctcccactagagttattcattctcctgctgatgtgtcag
cctttgtgaaggcactcccttgaatggtggttgacgctaacagaatgatt
tgaagatttactgggttgggttagacggtggtgtttgcacaactgcatag
aaggcccagtgttggtgtcaaaagatctcactagagagactacctcttta
aagaggagaggctcagggcaatttcccctgggacacttgtaacatgcagt
agggctaaaatgtggaattctacagtttcaaccttatgccatcattgact
gtgcaatgatacttatccactcttgctggctcctctgccctgaccaattc
cactgttacataaattacccagagttgactgctacagcttccactgtagg
actgcttgcttagggcagtttaaaagcagaggtgctgctatagataaatc
acttgacagttcacagaggactgaattctgaggaatataactagctagtg
ggagaaatgcacaagtccactattccttctctacaattctaggacctaaa
accatagggaaaactcagcctaaccatatttgtggctactcagatctgtt
attctaacctagacattgctttttcaaagtcaatgtgctatggctccaca
gtatctcgatcctccttggagtaacaagcttggacctttgttcatctgcc
tgagctattgacctgcactcagggtcacccgctggtggaggttcctgtcc
taacatcagtagctttttgactggcagagtgacagctgtgctctttcctt
agcagctcatacctctgggctaagtctgctaatgcataagccatattcaa
gacatgaaaagtctactctattcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4510105_4511199
seq2: B6Ng01-046B14.g_68_1143 (reverse)

seq1  GAGGAATAGAAAGTATGACTTTTCATTGTCTTG-ATATGTGCTTATGCAT  49
      |||||||||  |||| ||||||||| ||||||| ||||| ||||||||| 
seq2  GAGGAATAG--AGTA-GACTTTTCA-TGTCTTGAATATG-GCTTATGCA-  44

seq1  TTAGCAGGACTTAGCCCAAGAGGTATGAGGCTGGCTGAGGGAAAGGGCAC  99
      |||||| |||||||||| |||||||||| ||| ||| | |||||| ||||
seq2  TTAGCA-GACTTAGCCC-AGAGGTATGA-GCT-GCT-AAGGAAAGAGCAC  89

seq1  AGCTGTCACCTCCTGCCAGTCAAAAAAGCTACTGATGTTTAGGGACAGGA  149
      |||||||||   ||||||||| |||||||||||||||||   ||||||||
seq2  AGCTGTCAC--TCTGCCAGTC-AAAAAGCTACTGATGTT--AGGACAGGA  134

seq1  ACCTCCACCAGCGGGTGACCCTGGAGTGCAGGTCAATAGGCTCAGGCAGA  199
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  ACCTCCACCAGCGGGTGACCCT-GAGTGCAGGTCAATA-GCTCAGGCAGA  182

seq1  TGAACAAAGGTCCAAGCTTGTTACTCC-AGGAGGATCGAGATACTGTGGG  248
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TGAACAAAGGTCCAAGCTTGTTACTCCAAGGAGGATCGAGATACTGT-GG  231

seq1  AGCCATAGCACATTGACTTTTGAAAAAGCAATGTCTAGGTTAGAATAACA  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCCATAGCACATTGAC-TTTGAAAAAGCAATGTCTAGGTTAGAATAACA  280

seq1  GATTCTGAGTAGCCACAAATATGGTTAGGCTGAGTTTTCCCTATGGTTTT  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TCTGAGTAGCCACAAATATGGTTAGGCTGAGTTTTCCCTATGGTTTT  329

seq1  AGGTCCTAGAATTGTAGAGAAGGAATAGTGGACTTGTGCATTTCTCCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTAGAATTGTAGAGAAGGAATAGTGGACTTGTGCATTTCTCCCAC  379

seq1  TAGCTAGTTATATTCCTCAGAATTCAGTCCTCTGTGAACTGTCAAGTGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTTATATTCCTCAGAATTCAGTCCTCTGTGAACTGTCAAGTGAT  429

seq1  TTATCTATAGCAGCACCTCTGCTTTTAAACTGCCCTAAGCAAGCAGTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATAGCAGCACCTCTGCTTTTAAACTGCCCTAAGCAAGCAGTCCT  479

seq1  ACAGTGGAAGCTGTAGCAGTCAACTCTGGGTAATTTATGTAACAGTGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAAGCTGTAGCAGTCAACTCTGGGTAATTTATGTAACAGTGGAA  529

seq1  TTGGTCAGGGCAGAGGAGCCAGCAAGAGTGGATAAGTATCATTGCACAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGGGCAGAGGAGCCAGCAAGAGTGGATAAGTATCATTGCACAGT  579

seq1  CAATGATGGCATAAGGTTGAAACTGTAGAATTCCACATTTTAGCCCTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGCATAAGGTTGAAACTGTAGAATTCCACATTTTAGCCCTACT  629

seq1  GCATGTTACAAGTGTCCCAGGGGAAATTGCCCTGAGCCTCTCCTCTTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTACAAGTGTCCCAGGGGAAATTGCCCTGAGCCTCTCCTCTTTAA  679

seq1  AGAGGTAGTCTCTCTAGTGAGATCTTTTGACACCAACACTGGGCCTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGTCTCTCTAGTGAGATCTTTTGACACCAACACTGGGCCTTCTA  729

seq1  TGCAGTTGTGCAAACACCACCGTCTAACCCAACCCAGTAAATCTTCAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGTGCAAACACCACCGTCTAACCCAACCCAGTAAATCTTCAAAT  779

seq1  CATTCTGTTAGCGTCAACCACCATTCAAGGGAGTGCCTTCACAAAGGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTTAGCGTCAACCACCATTCAAGGGAGTGCCTTCACAAAGGCTG  829

seq1  ACACATCAGCAGGAGAATGAATAACTCTAGTGGGAGCCCTCCCAGGGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGCAGGAGAATGAATAACTCTAGTGGGAGCCCTCCCAGGGAGG  879

seq1  GCCAACCCAGGTGCAGAAAGAGCCCAGAAAGGTTAACCCAGGACACATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCAGGTGCAGAAAGAGCCCAGAAAGGTTAACCCAGGACACATCT  929

seq1  CACTTCCCTCCCTCCTTTGCTTCCTTGCAGCCCCCACTCATTAAGTCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTCCCTCCTTTGCTTCCTTGCAGCCCCCACTCATTAAGTCCAT  979

seq1  AACACTGAGGCTAGGCAAACTTCTTCAGGCTAGGAAGGCTATGGATTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGGCTAGGCAAACTTCTTCAGGCTAGGAAGGCTATGGATTAAG  1029

seq1  AGAAGAGCAGGAAGTGAACAGAACTGTAATATGAGTGTATGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCAGGAAGTGAACAGAACTGTAATATGAGTGTATGGAATTC  1076