BAC Information

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BAC

Clone NameB6Ng01-046E17
Chromosome1 (Build37)
Map Location 162,288,434 - 162,430,329
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046E17.bB6Ng01-046E17.g
ACCDH871504DH871505
length1,1091,052
definitionDH871504|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E17, 5' end.DH871505|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,288,434 - 162,289,556)(162,429,261 - 162,430,329)
sequence
gaattctttaaaatttgaaaatttcccaatatccaaaaatcaggtcaaag
atcaaagatgataccctgagtagcgctgatctctcaacattgtaaaatcc
catacaattaaaccattcttccattcaagtcttagttccacccaacacct
tgctacaggattctggggtaggaagacaagtcagacattgcttctaatgg
tatggattattcaagtccttgacaaaaagtggaaaatgaaatggaatgag
attgagcttacaagccatctcacaggaaaatgagtctcattagtttacag
ttgtaactcatatatcaaagaaatagagtatgaaataaaagacacaacat
aattgactggcactgtggtaggtggttcaaattataaatctataggaatg
tgaaagagaaaaagattactgaaaaatattgtagacttgctaagtggttg
tgtatgtgttttcacgaatgtctgacttgatgaaggatgctataatattg
ttattgttcttgcttgttttatgcaaaagagaatggtccccaaagcaact
tgaggatactctgaatggacttaacagtatcccattttcagtgtgatgcc
ttgactaatggaagaactgctctactgctttttggtaaggcagtctctgc
cttacatcagcactaacaggtagctcagaaggcagccattttattaccat
acattttatttgtttgaagagcactgtatagacagaaacctgaaacttgt
tggcagtagtctcaaatatatccatatctatagtttaataagtttaataa
gtatatataaagaatatatatttaaataatattgaatatatcacatataa
actatattaaaatatataaatatattattttaataagtttaatatatatg
tatgtatagtaaactaaaatattaatgccacaccatatatacaacttgat
gtatgtaatggatattttatgtcacttgacagaagtagagtattagaaaa
gggaacttgattgaaactgcctcctacagttgcttgtaagtaagactctg
tgcattttctgatagaatgggaagggtccatccatatgggtgtgtccctc
tgattcagg
gaattctccctggaatcactattgcttagcttctctcatacatgcacact
cctatgtcctccttggcttcttgagtacttaagagtcagaaattccatta
gttaatatgctaactcttccttagtattgagcactaatttcactcagccc
tcattttctagcctagtggccaatttgtaactttagctttctcttctttc
atgtgggtttcgaatctatccctgggtcattgctaatttaacttaaaagt
aggtacctagacaggaatattgtctttgtgttgacaaacttcataacaaa
tgttaattgtgctgaaattcttgcctctcaactggtgaaagctctcgacc
agagcccaggatgaggggctctctcctctaatgtctctatcagttttctt
tcctttctatcctgctctgtgctgtgtcattaaatgttgacaaggtagtg
atttaatttcctttaattttctttattcttccccttatttctaattatct
tttgtcctcttcatttttcttttttaaaattcatcttttgtttcttgttc
atttccatctcatttctcaaaaatacaaaacaaacaaacaaaatcaaaaa
cctctgccattattagcactctggctgtgtgatcctaccagtgtcgattg
actgtgcccaacttagaactttctgtgaatggacaaacaatatgaactct
tgtgcatgggcttctttcactgtagagagtttctctggacaggtgattgt
tgtcagttgaatgccagactgttctgttctttgtatcatgcttaccatta
tctccactacacctcgaattgccactgaaagttccttctctcagattttg
accacagtagtacaatcctcttggggacaagtcaccctggttaagaacaa
agggtagttttctatttctaggattataggatgtagtatgcatcattttt
gactgactgataatgtttcatcattagagctacttctattttctgatagt
acataggcatcttgactgttctagcatgatcatagctgctataattcctc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162288434_162289556
seq2: B6Ng01-046E17.b_46_1154

seq1  GAATTCTTTAAAATTTGAAAATTTCCCAATATCCAAAAATCAGGTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTTGAAAATTTCCCAATATCCAAAAATCAGGTCAAAG  50

seq1  ATCAAAGATGATACCCTGAGTAGCGCTGATCTCTCAACATTGTAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGATGATACCCTGAGTAGCGCTGATCTCTCAACATTGTAAAATCC  100

seq1  CATACAATTAAACCATTCTTCCATTCAAGTCTTAGTTCCACCCAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTAAACCATTCTTCCATTCAAGTCTTAGTTCCACCCAACACCT  150

seq1  TGCTACAGGATTCTGGGGTAGGAAGACAAGTCAGACATTGCTTCTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGGATTCTGGGGTAGGAAGACAAGTCAGACATTGCTTCTAATGG  200

seq1  TATGGATTATTCAAGTCCTTGACAAAAAGTGGAAAATGAAATGGAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTATTCAAGTCCTTGACAAAAAGTGGAAAATGAAATGGAATGAG  250

seq1  ATTGAGCTTACAAGCCATCTCACAGGAAAATGAGTCTCATTAGTTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTTACAAGCCATCTCACAGGAAAATGAGTCTCATTAGTTTACAG  300

seq1  TTGTAACTCATATATCAAAGAAATAGAGTATGAAATAAAAGACACAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTCATATATCAAAGAAATAGAGTATGAAATAAAAGACACAACAT  350

seq1  AATTGACTGGCACTGTGGTAGGTGGTTCAAATTATAAATCTATAGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGGCACTGTGGTAGGTGGTTCAAATTATAAATCTATAGGAATG  400

seq1  TGAAAGAGAAAAAGATTACTGAAAAATATTGTAGACTTGCTAAGTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGAAAAAGATTACTGAAAAATATTGTAGACTTGCTAAGTGGTTG  450

seq1  TGTATGTGTTTTCACGAATGTCTGACTTGATGAAGGATGCTATAATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTTTCACGAATGTCTGACTTGATGAAGGATGCTATAATATTG  500

seq1  TTATTGTTCTTGCTTGTTTTATGCAAAAGAGAATGGTCCCCAAAGCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCTTGCTTGTTTTATGCAAAAGAGAATGGTCCCCAAAGCAACT  550

seq1  TGAGGATACTCTGAATGGACTTAACAGTATCCCATTTTCAGTGTGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATACTCTGAATGGACTTAACAGTATCCCATTTTCAGTGTGATGCC  600

seq1  TTGACTAATGGAAGAACTGCTCTACTGCTTTTTGGTAAGGCAGTCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAATGGAAGAACTGCTCTACTGCTTTTTGGTAAGGCAGTCTCTGC  650

seq1  CTTACATCAGCACTAACAGGTAGCTCAGAAGGCAGCCATTTTATTACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATCAGCACTAACAGGTAGCTCAGAAGGCAGCCATTTTATTACCAT  700

seq1  ACATTTTATTTGTTTGAAGAGCACTGTATAGACAGAAACCTGAAACTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATTTGTTTGAAGAGCACTGTATAGACAGAAACCTGAAACTTGT  750

seq1  TGGCAGTAGTCTCAAATATATCCATATCTATAGTTTAATAAGTTTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTAGTCTCAAATATATCCATATCTATAGTTTAATAAGTTTAATAA  800

seq1  GTATATATAAAGAATATATATTTAAATAATATTGAATATATCACATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATAAAGAATATATATTTAAATAATATTGAATATATCACATATAA  850

seq1  ACTATATTAAAATATATAAATATATTAATTTAATAAGTTTAATATATATG  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTATATTAAAATATATAAATATATTATTTTAATAAGTTTAATATATATG  900

seq1  TATGTATAGTAAACTAAAATATTAATGCCACACAATATATACAACTTGAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATGTATAGTAAACTAAAATATTAATGCCACACCATATATACAACTTGAT  950

seq1  GTATGTAATGGATAATTTTATGTCAACTTGACAGAAGTTAGAGTTATTTA  1000
      ||||||||||||| |||||||||| |||||||||||| ||||| ||||  
seq2  GTATGTAATGGAT-ATTTTATGTC-ACTTGACAGAAG-TAGAG-TATT--  994

seq1  AGAAAAGGGAACCTGAATTGAAAACTGCCTCC-ACAGGTTGGCTTGTAGG  1049
      |||||||||||| || |||| ||||||||||| ||||  | ||||||| |
seq2  AGAAAAGGGAACTTG-ATTG-AAACTGCCTCCTACAG--TTGCTTGTAAG  1040

seq1  TAAGACTCTGGTGCATTTTCTTGATAGATGGGGAAGGGCCCAGTCTATTG  1099
      ||||||||| |||||||||| |||||||  |||||||| ||| || | | 
seq2  TAAGACTCT-GTGCATTTTC-TGATAGAATGGGAAGGGTCCA-TCCA-TA  1086

seq1  TGGGTGGTGTCACCCTGATTCAGG  1123
      ||||| ||||| | ||||||||||
seq2  TGGGT-GTGTCCCTCTGATTCAGG  1109

seq1: chr1_162429261_162430329
seq2: B6Ng01-046E17.g_66_1117 (reverse)

seq1  AAGAGGAAATATATAGCAGCTATGATCATGCTAGAAACAGTCCAAAGAAT  50
      ||||||||   ||||||||||||||||||||||| |||||||  ||||  
seq2  AAGAGGAA--TTATAGCAGCTATGATCATGCTAG-AACAGTC--AAGA--  43

seq1  TGCCTATTGGTAACTATCCAGGAAAATAGAAGTAGCTCTAAATGATGGAA  100
      |||||||  || ||||||   |||||||||||||||||| ||||||| ||
seq2  TGCCTAT--GT-ACTATC--AGAAAATAGAAGTAGCTCT-AATGATGAAA  87

seq1  CATTATCAGTCAGTCATAAAATGATGCATACTACAATCCTATTAATCCTA  150
      |||||||||||||||| ||||||||||||||||| |||||| ||||||||
seq2  CATTATCAGTCAGTCA-AAAATGATGCATACTAC-ATCCTA-TAATCCTA  134

seq1  GAAATAGAAAACTACCCTTTGTTCTTAACCAGGGTGACTTGTCCCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAAACTACCCTTTGTTCTTAACCAGGGTGACTTGTCCCCAAGA  184

seq1  GGATGGTACTACTGGTGGTCAAAATCTGAGGGAAGGAACTGTCAGTGGCA  250
      |||| |||||||| |||||||||||||||| ||||||||| |||||||||
seq2  GGATTGTACTACT-GTGGTCAAAATCTGAGAGAAGGAACTTTCAGTGGCA  233

seq1  ATTCGAGGTGTAGTGGAGATAATGGTAAGCATGATACAAAGAACAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAGGTGTAGTGGAGATAATGGTAAGCATGATACAAAGAACAGAACA  283

seq1  GTCTGGCATTCAACTGACAACAATCACCTGTCCAGAGAAACTCTCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCATTCAACTGACAACAATCACCTGTCCAGAGAAACTCTCTACAG  333

seq1  TGAAAGAAGCCCATGCACAAGAGTTCATATTGTTTGTCCATTCACAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGCCCATGCACAAGAGTTCATATTGTTTGTCCATTCACAGAAA  383

seq1  GTTCTAAGTTGGGCACAGTCAATCGACACTGGTAGGATCACACAGCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGTTGGGCACAGTCAATCGACACTGGTAGGATCACACAGCCAGA  433

seq1  GTGCTAATAATGGCAGAGGTTTTTGATTTTGTTTGTTTGTTTTGTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATAATGGCAGAGGTTTTTGATTTTGTTTGTTTGTTTTGTATTTT  483

seq1  TGAGAAATGAGATGGAAATGAACAAGAAACAAAAGATGAATTTTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGAGATGGAAATGAACAAGAAACAAAAGATGAATTTTAAAAAA  533

seq1  GAAAAATGAAGAGGACAAAAGATAATTAGAAATAAGGGGAAGAATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAAGAGGACAAAAGATAATTAGAAATAAGGGGAAGAATAAAGA  583

seq1  AAATTAAAGGAAATTAAATCACTACCTTGTCAACATTTAATGACACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGGAAATTAAATCACTACCTTGTCAACATTTAATGACACAGCA  633

seq1  CAGAGCAGGATAGAAAGGAAAGAAAACTGATAGAGACATTAGAGGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGATAGAAAGGAAAGAAAACTGATAGAGACATTAGAGGAGAGA  683

seq1  GCCCCTCATCCTGGGCTCTGGTCGAGAGCTTTCACCAGTTGAGAGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCATCCTGGGCTCTGGTCGAGAGCTTTCACCAGTTGAGAGGCAAG  733

seq1  AATTTCAGCACAATTAACATTTGTTATGAAGTTTGTCAACACAAAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGCACAATTAACATTTGTTATGAAGTTTGTCAACACAAAGACAA  783

seq1  TATTCCTGTCTAGGTACCTACTTTTAAGTTAAATTAGCAATGACCCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGTCTAGGTACCTACTTTTAAGTTAAATTAGCAATGACCCAGGG  833

seq1  ATAGATTCGAAACCCACATGAAAGAAGAGAAAGCTAAAGTTACAAATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCGAAACCCACATGAAAGAAGAGAAAGCTAAAGTTACAAATTGG  883

seq1  CCACTAGGCTAGAAAATGAGGGCTGAGTGAAATTAGTGCTCAATACTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGCTAGAAAATGAGGGCTGAGTGAAATTAGTGCTCAATACTAAG  933

seq1  GAAGAGTTAGCATATTAACTAATGGAATTTCTGACTCTTAAGTACTCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTAGCATATTAACTAATGGAATTTCTGACTCTTAAGTACTCAAG  983

seq1  AAGCCAAGGAGGACATAGGAGTGTGCATGTATGAGAGAAGCTAAGCAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGAGGACATAGGAGTGTGCATGTATGAGAGAAGCTAAGCAATA  1033

seq1  GTGATTCCAGGGAGAATTC  1069
      |||||||||||||||||||
seq2  GTGATTCCAGGGAGAATTC  1052