BAC Information

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BAC

Clone NameB6Ng01-046I01
Chromosome2 (Build37)1 (Build37)
Map Location 100,610,346 - 100,610,76612,768,274 - 12,769,289
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046I01.bB6Ng01-046I01.g
ACCDH871644DH871645
length1,0101,020
definitionDH871644|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I01, 5' end.DH871645|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,610,346 - 100,610,766)(12,768,274 - 12,769,289)
sequence
gaattctttgtttagctctgtacttcatttttaatagggttttttgattt
tctggagtccaacatcttgagttctttgtatatattggatattagtccac
tatcagatttaggattggtaaagatcctctcccaatctattggtagcctt
tttgtcttattaacagtatctttagctgtacagaagctttgcaattttat
gaggtcccatttgtcgattcacgatcttatagcacaagccaatgctgttc
tgtttaggaattttttccctgtgcccatatcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggaggtccttgat
tcacttagacttgagctttgtacaaagagatgagaatggatcaattctgg
ctggggaaatggctgagcagttaggagcactgactgcacttctgaaggtc
ctgagttcaaatcccagcaaccacatagtggcttacaaccacacggaaca
agatctgacaccctcttctggagtgtctgaaaacagctacagtgtactta
catataataaagtttgagttatttttatattcagctattgcactgaagct
gtttaccaggcttaggagttctctggtggaatttttagggtcacttatat
atactatcatatcatctgcaaatagtgatattttgactttttcatttcaa
tttgcatcctcttgatctcctttaattgtctagttcctctggccaggatt
tcaggtactatattgaacaggaaggaagaaagtgggcagccttgtctagt
cccttattttagtgggattgcttcaagtttctctccatttagtttaatat
tggctattggtttattgtaaaattgcttttgttatgtttagtatgggcct
tgaattcctgatctttccaagactttatcatgaatgagtgttggattttg
ccaaatgcttttctcagcatataaagagatgatcatgtggttttttgtct
ttgtttatat
gaattcttggagctggagttatgggagattgtgaactgcctagtctgggt
gctagaaagggcagcaagcactactgagaccagcctctcgatttgtagct
atcctttccccatggatgtgtgctaactaagcagtgttctcttactgctt
cagaaaatggaataagcagcaagaaaggaaaaaaaaaataaactaaagaa
ttttgcagggagctttcacgcctttaacatggaaggcacccaggacattt
tgaacatctcactggctgtacgcaactataggtatggccgtacccaagtg
caggaatgctgggaattctggtgaaggagcttctactgggtgttgctgtc
tgctccacacaggtacgggtccaccaatccttcatgcttaatttgtgtgt
gtatactgtgacatgtgcagtccttaagttctgtgtataactctatttat
gcccaggcacatagaatcttaagtaatgaagaaatgtatttacacataga
ttcatgaatcatgaaaaactataatcactggtcaacattaaacaaccttg
ggcactaaaaacatgcttttcaaagacttgttgtagctcagttgcagagg
gcatgtttaccatgctttaaggttcagagatcaaatcctgggcctacaga
caagcaatatagaattctaaagatttaatttttgagacaaagcctcgcta
tgtagtagagattgccctgaaacatactaggtggttagcccaggctagcc
tcatttcaggctctgggattacagcatgtaccatgactcagctcagaagt
ggggaatcaacccggacactattgcatattgtcagaaagattctgctgaa
gggaccctgttatagctgtcttcgtatgaaggctatgccatttgcttggc
aaatatagaattggatgctcccagtcagctaatgggatggaacacagggc
ccccaatcgaggatactaaaaagtacccaagaatctgaacgggtctgcaa
cctattaggagaccaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100610346_100610766
seq2: B6Ng01-046I01.b_642_1056 (reverse)

seq1  ATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCA  50
      |||||||||||  ||     |||||||||||||||||||| ||| |||| 
seq2  ATATAAACAAAGACA-----AAAAACCACATGATCATCTCTTTATATGCT  45

seq1  GA-AAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGG  99
      || ||||||||||| ||| ||||||||| |||||||||| ||||| ||||
seq2  GAGAAAAGCATTTGGCAAAATCCAACACTCATTCATGAT-AAAGTCTTGG  94

seq1  AAAGATCAGGAATTCAAGGCCCATACCTAAACATAATAAAAGCAA-TCTA  148
      ||||||||||||||||||||||||| |||||||||| |||||||| | ||
seq2  AAAGATCAGGAATTCAAGGCCCATA-CTAAACATAACAAAAGCAATTTTA  143

seq1  CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA  198
      ||  |||||| ||||||| || ||| ||||||||||||| || |||||||
seq2  CAATAAACCAATAGCCAATATTAAACTAAATGGAGAGAAACTTGAAGCAA  193

seq1  TCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT  248
      |||||||||||| |||||||||||||||||||||||||||| ||| ||| 
seq2  TCCCACTAAAATAAGGGACTAGACAAGGCTGCCCACTTTCTTCCTTCCTG  243

seq1  TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGA  298
      ||||| ||||||| |||| |  | ||||||| || | |||||  ||||||
seq2  TTCAATATAGTACCTGAAATCCTGGCCAGAGGAACTAGACAATTAAAGGA  293

seq1  GATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTG  348
      ||||||| |||| |||||| |||| ||  |||||||||||||||| ||||
seq2  GATCAAGAGGATGCAAATT-GAAATGAAAAAGTCAAAATATCACTATTTG  342

seq1  CAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAA  392

seq1  CTCCTAAACCTGATAAACAGCTT  421
      ||||||| |||| ||||||||||
seq2  CTCCTAAGCCTGGTAAACAGCTT  415

seq1: chr1_12768274_12769289
seq2: B6Ng01-046I01.g_67_1086 (reverse)

seq1  ATTGTTGGTCCTCCTATAGGGTTGCAGACCCGTTCAGCTCCTTGGGTACT  50
      ||||||||| ||||||   |||||||||||||||||| | ||||||||||
seq2  ATTGTTGGT-CTCCTAATAGGTTGCAGACCCGTTCAGATTCTTGGGTACT  49

seq1  TTCTCTAGT-TCCTCGATTGGGGGCCCTGTGTTCCAT-CCAATAGCTGAC  98
      |  | |||| ||||||||||||||||||||||||||| ||| ||||||||
seq2  T--TTTAGTATCCTCGATTGGGGGCCCTGTGTTCCATCCCATTAGCTGAC  97

seq1  TGTGAGCATCCAATTCTATATTTGCCAGGC-ACTGGCATAGCC-TCATAC  146
      || |||||||||||||||||||||||| || | |||||||||| ||||||
seq2  TGGGAGCATCCAATTCTATATTTGCCAAGCAAATGGCATAGCCTTCATAC  147

seq1  G-AGACAGCTATAACAGGGTCCCTTCAGCAGAATCTTTCTGAC-ATATGC  194
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGACAGCTATAACAGGGTCCCTTCAGCAGAATCTTTCTGACAATATGC  197

seq1  AATAGTGTCCGGGTTGATTCCCCACTTCTGAGCTGAGTCATGGTACATGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTCCGGGTTGATTCCCCACTTCTGAGCTGAGTCATGGTACATGC  247

seq1  TGTAATCCCAGAGCCTGAAATGAGGCTAGCCTGGGCT-ACCACCTAGTAT  293
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAATCCCAGAGCCTGAAATGAGGCTAGCCTGGGCTAACCACCTAGTAT  297

seq1  GTTTCAGGGCAATCTCTACTACATAGCGAGGCTTTGTCTCAAAAATTAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGCAATCTCTACTACATAGCGAGGCTTTGTCTCAAAAATTAAA  347

seq1  TCTTTAGAATTCTATATTGCTTGTCTGTAGGCCCAGGATTTGATCTCTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAATTCTATATTGCTTGTCTGTAGGCCCAGGATTTGATCTCTGA  397

seq1  ACCTTAAAGCATGGTAAACATGCCCTCTGCAACTGAGCTACAACAAGTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAGCATGGTAAACATGCCCTCTGCAACTGAGCTACAACAAGTCT  447

seq1  TTGAAAAGCATGTTTTTAGTGCCCAAGGTTGTTTAATGTTGACCAGTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGCATGTTTTTAGTGCCCAAGGTTGTTTAATGTTGACCAGTGAT  497

seq1  TATAGTTTTTCATGATTCATGAATCTATGTGTAAATACATTTCTTCATTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTTCATGATTCATGAATCTATGTGTAAATACATTTCTTCATTA  547

seq1  CTTAAGATTCTATGTGCCTGGGCATAAATAGAGTTATACACAGAACTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATTCTATGTGCCTGGGCATAAATAGAGTTATACACAGAACTTAA  597

seq1  GGACTGCACATGTCACAGTATACACACACAAATTAAGCATGAAGGATTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCACATGTCACAGTATACACACACAAATTAAGCATGAAGGATTGG  647

seq1  TGGACCCGTACCTGTGTGGAGCAGACAGCAACACCCAGTAGAAGCTCCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCGTACCTGTGTGGAGCAGACAGCAACACCCAGTAGAAGCTCCTT  697

seq1  CACCAGAATTCCCAGCATTCCTGCACTTGGGTACGGCCATACCTATAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAATTCCCAGCATTCCTGCACTTGGGTACGGCCATACCTATAGTT  747

seq1  GCGTACAGCCAGTGAGATGTTCAAAATGTCCTGGGTGCCTTCCATGTTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACAGCCAGTGAGATGTTCAAAATGTCCTGGGTGCCTTCCATGTTAA  797

seq1  AGGCGTGAAAGCTCCCTGCAAAATTCTTTAGTTTATTTTTTTTTTCCTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGAAAGCTCCCTGCAAAATTCTTTAGTTTATTTTTTTTTTCCTTT  847

seq1  CTTGCTGCTTATTCCATTTTCTGAAGCAGTAAGAGAACACTGCTTAGTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTTATTCCATTTTCTGAAGCAGTAAGAGAACACTGCTTAGTTA  897

seq1  GCACACATCCATGGGGAAAGGATAGCTACAAATCGAGAGGCTGGTCTCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATCCATGGGGAAAGGATAGCTACAAATCGAGAGGCTGGTCTCAG  947

seq1  TAGTGCTTGCTGCCCTTTCTAGCACCCAGACTAGGCAGTTCACAATCTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTGCTGCCCTTTCTAGCACCCAGACTAGGCAGTTCACAATCTCC  997

seq1  CATAACTCCAGCTCCAAGAATTC  1016
      |||||||||||||||||||||||
seq2  CATAACTCCAGCTCCAAGAATTC  1020