BAC Information

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BAC

Clone NameB6Ng01-046L09
Chromosome1 (Build37)
Map Location 191,762,492 - 191,904,750
singlet/doubletdoublet
Overlap genenone
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
Downstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L09.bB6Ng01-046L09.g
ACCDH871790DH871791
length1,124942
definitionDH871790|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L09, 5' end.DH871791|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,762,492 - 191,763,641)(191,903,806 - 191,904,750)
sequence
gaattcatgaagtttctccatgttgactgaacaaacccagcgagagccaa
gcaaaaggcacacaaccagatacaccttgcaagttacaagcactgcaagc
tacaagcacaggcatatagagccctgggggtgaagagaggatcagagggc
ttccagaggttatggtgggtggacactacattgtcagattgcactaacaa
cagtagctttgcaaattggagatagtataataatgtctttaaaaattgta
agggcaaaacatttgcaacctgaaattttctatcctctaaaatcaccact
cagaataaatgtattttctgactgggaggtctcaaaatgtatacttatgt
gcctttctctcccacagcaaaccaactctgccacctctagggtgtagcat
agcaaagcaggaaaatacagggaagagaatggtgcagcatttgggacaca
aaggatgaaagggaaggaagatcctacgtcattaactgtgagtaacatct
gcagaacacaactaggaccaagagaggaaaccagggtattgctctgtgtt
ccctaagagactgtgtacacttgtggggaacaatgtggggtgaacattta
gaaaatattgcacataaaatcatagcagtaatgttggaagaaacaagcac
tcaggactttcagtgtgtgtaaccatagtccattgtagtctagagtttat
tcatctaagatactctcagttatgagatgtgccaatgttttgtgagccac
tgacaaggtaaatgacttactgttggtcccatgtgttgctttgaaatgtc
tcccacctatgctgatggggtgagtacattggttccacttctggttgcat
ttgctatgagagggagtctttctatgttctcatcggcaagcaacacagtc
tcatctaccacatacaagaatctttctctgcaagtcgcttttatttttcc
tgtggcaataatttgctttactataacaattatactcccttttcttttct
ggctatgtacacaaaatatatcctagtctttgaaataattacatttattt
ttgcatctgatggcatttgtgtgtctatagacgtatgtcatcaaagcatc
tatcatctactatatctatctatc
gaattcacccagaaagggccacttagcttccccttccacaagattcagat
taatggggaggcaagcgcccacccacatcaaggaaagcccaggcctacgc
attgcaagtgcctcgcaggaaagaaggcctaagaaaaccctggcagaggc
ttgaagcctgatgaaggaagggggttaagtgaacatttttagaataaaag
caacctaagaggagaagagcggaggtactggcctacaagatcacatagca
cactctcgtggcccatgtcacaaagacactgacagaggaagaggaaggag
gaaagggcctttcaagttttaagtttcttcgttcaaaaaagaaaaaggaa
gtatcggagagacagagctgcaggtcatttttgtctgtttagggagacga
tgctggtgtcattggattccaagcagcgcagcactgaagagacttgcaac
caacccatagccagcctgaatcgccaccgtggcagggagaagggcctatg
agctgagcccaagagccgggcacagctggacaaggatgtttattcaaggg
actcatgctgcccgtgtgcccctggcccaaatgaccaagatacagttggc
gttatccacgtggggctgttccttgatgattactccaatctcaagagaaa
aggaggaaaaaaaaaaacaaaaaacaaaaaaccaaccctacccttcctga
ggaacactctggattcaatgccaacccgagacagctgctgatgttgaaca
acaatgtcaaggacctactgtcccttcctgcccctcctccgccgccacag
aaaggactgtgaaaagaccaagagctggtgggcagccagcaagaactaaa
gaacttacagctggcaaaaccacctgtgccttgtcaaattccagccaaac
aatcctctcccagagtctggctaagagcgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191762492_191763641
seq2: B6Ng01-046L09.b_43_1166

seq1  GAATTCATGAAGTTTCTCCATGTTGACTGAACAAACCCAGCGAGAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGTTTCTCCATGTTGACTGAACAAACCCAGCGAGAGCCAA  50

seq1  GCAAAAGGCACACAACCAGATACACCTTGCAAGTTACAAGCACTGCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGCACACAACCAGATACACCTTGCAAGTTACAAGCACTGCAAGC  100

seq1  TACAAGCACAGGCATATAGAGCCCTGGGGGTGAAGAGAGGATCAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCACAGGCATATAGAGCCCTGGGGGTGAAGAGAGGATCAGAGGGC  150

seq1  TTCCAGAGGTTATGGTGGGTGGACACTACATTGTCAGATTGCACTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGTTATGGTGGGTGGACACTACATTGTCAGATTGCACTAACAA  200

seq1  CAGTAGCTTTGCAAATTGGAGATAGTATAATAATGTCTTTAAAAATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTTTGCAAATTGGAGATAGTATAATAATGTCTTTAAAAATTGTA  250

seq1  AGGGCAAAACATTTGCAACCTGAAATTTTCTATCCTCTAAAATCACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAACATTTGCAACCTGAAATTTTCTATCCTCTAAAATCACCACT  300

seq1  CAGAATAAATGTATTTTCTGACTGGGAGGTCTCAAAATGTATACTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAATGTATTTTCTGACTGGGAGGTCTCAAAATGTATACTTATGT  350

seq1  GCCTTTCTCTCCCACAGCAAACCAACTCTGCCACCTCTAGGGTGTAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCTCCCACAGCAAACCAACTCTGCCACCTCTAGGGTGTAGCAT  400

seq1  AGCAAAGCAGGAAAATACAGGGAAGAGAATGGTGCAGCATTTGGGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAGGAAAATACAGGGAAGAGAATGGTGCAGCATTTGGGACACA  450

seq1  AAGGATGAAAGGGAAGGAAGATCCTACGTCATTAACTGTGAGTAACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAAAGGGAAGGAAGATCCTACGTCATTAACTGTGAGTAACATCT  500

seq1  GCAGAACACAACTAGGACCAAGAGAGGAAACCAGGGTATTGCTCTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACACAACTAGGACCAAGAGAGGAAACCAGGGTATTGCTCTGTGTT  550

seq1  CCCTAAGAGACTGTGTACACTTGTGGGGAACAATGTGGGGTGAACATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGAGACTGTGTACACTTGTGGGGAACAATGTGGGGTGAACATTTA  600

seq1  GAAAATATTGCACATAAAATCATAGCAGTAATGTTGGAAGAAACAAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTGCACATAAAATCATAGCAGTAATGTTGGAAGAAACAAGCAC  650

seq1  TCAGGACTTTCAGTGTGTGTAACCATAGTCCATTGTAGTCTAGAGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTTTCAGTGTGTGTAACCATAGTCCATTGTAGTCTAGAGTTTAT  700

seq1  TCATCTAAGATACTCTCAGTTATGAGATGTGCCAATGTTTTGTGAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAGATACTCTCAGTTATGAGATGTGCCAATGTTTTGTGAGCCAC  750

seq1  TGACAAGGTAAATGACTTACTGTTGGTCCCATGTGTTGCTTTGAAATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTAAATGACTTACTGTTGGTCCCATGTGTTGCTTTGAAATGTC  800

seq1  TCCCACCTATGCTGATGGGGTGAGTACATTGGTTCCACTTCTGGTTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTATGCTGATGGGGTGAGTACATTGGTTCCACTTCTGGTTGCAT  850

seq1  TTGCTATGAGAGGGAGTCTTTTCTATGTTCTCATCGGCAAGCAACACAGT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCTATGAGAGGGAGTC-TTTCTATGTTCTCATCGGCAAGCAACACAGT  899

seq1  CTCATCTACCACATACAAGAATCTTTCCCTGCAAGTCGCTTTTATTTTTC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCATCTACCACATACAAGAATCTTTCTCTGCAAGTCGCTTTTATTTTTC  949

seq1  CTGTGGCAAATATTTGCTTTACTAATAACAAATTTATACTCCCCTTTTCT  1000
      |||||||||  |||||||||||| |||||||  ||||||| |||||||||
seq2  CTGTGGCAATAATTTGCTTTACT-ATAACAA--TTATACT-CCCTTTTCT  995

seq1  TTTCTGGCTATGTACACAAAAATTATAATCCTAGTTCTTTTGAAAATAAT  1050
      |||||||||||||||||||||  ||| ||||||| |||||   |||||| 
seq2  TTTCTGGCTATGTACACAAAA--TAT-ATCCTAG-TCTTT--GAAATAA-  1038

seq1  TTTACATTTATTTTTGCATCTGATGGGCATATGTGTGTCATAATAGACCA  1100
       ||||||||||||||||||||||| ||||| ||||||||   ||||||  
seq2  -TTACATTTATTTTTGCATCTGAT-GGCATTTGTGTGTC--TATAGAC--  1082

seq1  TAATGTCAATTTAAAAAGCATCTATCTATCTATCTATTTATCTATCTATC  1150
        ||||||      |||||||||||| ||||| |||  ||||||||||||
seq2  GTATGTCA----TCAAAGCATCTATC-ATCTA-CTA--TATCTATCTATC  1124

seq1: chr1_191903806_191904750
seq2: B6Ng01-046L09.g_68_1009 (reverse)

seq1  CCCCCCCCCCCCCCGCTTCTTAGCCAGACTCTGGGGAGAGGATTGTTTTG  50
      |||||||||||||||| ||||||||||||||| |||||||||||| ||||
seq2  CCCCCCCCCCCCCCGC-TCTTAGCCAGACTCT-GGGAGAGGATTG-TTTG  47

seq1  GCTGGAATTTGACAAGGCACAGGTGGTTTTGCCAGCTGTAAGTTCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTTGACAAGGCACAGGTGGTTTTGCCAGCTGTAAGTTCTTTAG  97

seq1  TTCTTGCTGGCTGCCCACCAGCTCTTGGTCTTTTCACAGTCCTTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTGGCTGCCCACCAGCTCTTGGTCTTTTCACAGTCCTTTCTGTG  147

seq1  GCGGCGGAGGAGGGGCAGGAAGGGACAGTAGGTCCTTGACATTGTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGAGGAGGGGCAGGAAGGGACAGTAGGTCCTTGACATTGTTGTTC  197

seq1  AACATCAGCAGCTGTCTCGGGTTGGCATTGAATCCAGAGTGTTCCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGCAGCTGTCTCGGGTTGGCATTGAATCCAGAGTGTTCCTCAGG  247

seq1  AAGGGTAGGGTTGGTTTTTTGTTTTTTGTTTTTTTTTTTCCTCCTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGGGTTGGTTTTTTGTTTTTTGTTTTTTTTTTTCCTCCTTTTCT  297

seq1  CTTGAGATTGGAGTAATCATCAAGGAACAGCCCCACGTGGATAACGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATTGGAGTAATCATCAAGGAACAGCCCCACGTGGATAACGCCAA  347

seq1  CTGTATCTTGGTCATTTGGGCCAGGGGCACACGGGCAGCATGAGTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTTGGTCATTTGGGCCAGGGGCACACGGGCAGCATGAGTCCCTT  397

seq1  GAATAAACATCCTTGTCCAGCTGTGCCCGGCTCTTGGGCTCAGCTCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACATCCTTGTCCAGCTGTGCCCGGCTCTTGGGCTCAGCTCATAG  447

seq1  GCCCTTCTCCCTGCCACGGTGGCGATTCAGGCTGGCTATGGGTTGGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCCCTGCCACGGTGGCGATTCAGGCTGGCTATGGGTTGGTTGC  497

seq1  AAGTCTCTTCAGTGCTGCGCTGCTTGGAATCCAATGACACCAGCATCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTCAGTGCTGCGCTGCTTGGAATCCAATGACACCAGCATCGTC  547

seq1  TCCCTAAACAGACAAAAATGACCTGCAGCTCTGTCTCTCCGATACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAACAGACAAAAATGACCTGCAGCTCTGTCTCTCCGATACTTCCT  597

seq1  TTTTCTTTTTTGAACGAAGAAACTTAAAACTTGAAAGGCCCTTTCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTGAACGAAGAAACTTAAAACTTGAAAGGCCCTTTCCTCCT  647

seq1  TCCTCTTCCTCTGTCAGTGTCTTTGTGACATGGGCCACGAGAGTGTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTCTGTCAGTGTCTTTGTGACATGGGCCACGAGAGTGTGCTA  697

seq1  TGTGATCTTGTAGGCCAGTACCTCCGCTCTTCTCCTCTTAGGTTGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTGTAGGCCAGTACCTCCGCTCTTCTCCTCTTAGGTTGCTTTT  747

seq1  ATTCTAAAAATGTTCACTTAACCCCCTTCCTTCATCAGGCTTCAAGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAAATGTTCACTTAACCCCCTTCCTTCATCAGGCTTCAAGCCTC  797

seq1  TGCCAGGGTTTTCTTAGGCCTTCTTTCCTGCGAGGCACTTGCAATGCGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGTTTTCTTAGGCCTTCTTTCCTGCGAGGCACTTGCAATGCGTA  847

seq1  GGCCTGGGCTTTCCTTGATGTGGGTGGGCGCTTGCCTCCCCATTAATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGCTTTCCTTGATGTGGGTGGGCGCTTGCCTCCCCATTAATCTG  897

seq1  AATCTTGTGGAAGGGGAAGCTAAGTGGCCCTTTCTGGGTGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTGGAAGGGGAAGCTAAGTGGCCCTTTCTGGGTGAATTC  942