BAC Information

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BAC

Clone NameB6Ng01-046P02
Chromosome1 (Build37)
Map Location 14,088,784 - 14,224,719
singlet/doubletdoublet
Overlap geneEya1
Upstream genePrdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P02.bB6Ng01-046P02.g
ACCDH871953DH871954
length1,1051,140
definitionDH871953|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P02, 5' end.DH871954|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,088,784 - 14,089,897)(14,223,569 - 14,224,719)
sequence
gaattcctcttggcctggcctgactccatcagtgttcccaattagcctag
tagcctttggtatcaaatgctaagaaaatcagatgatgttccattttgtt
cagatgacacttaaatgcagtgtataaactgagcatgctgtagggacctg
ccatgctaagttttcaactacctttctatgctgcattgtctttatagtga
gacccatggtgttttttaaaaaggccattctgactttgctaaattgaaaa
acagggaaatgaaggcaaagctccaggcacaaatttccagcctgtatccc
actcagtcatccttctctttagtaaatccaaaacacagagatattgctcc
aaagcctgtgtttgaaccacgagctgcatgtatgctgctctgcgcacaca
ctgtctatgggtagattgtctttcctggggccccagggcaggctcagcct
tcctgagccagacatcagtttctgtcggaaagcagagacacaaagccccc
tttaatgcccctgcaatgagcggtaagatgaaacatgcctgctgatgggt
aacctatctgtccccaaagacactgttcctcagaacccagcatttgttgg
ctctgggtggaggcttttagcatttgcaggatggtaggagatttggccca
tagcccttctgttgattgtctccatcccgagccagaataatcaattacca
gttccctttcttcatctcttcactaattatttttgcatatttccctctga
ttcttgggaatcagagatgatgggtatcattttcatatcactgagattcc
ttaacagcataaagacagtcacaaacacttctgcccttagtaggacttca
aatgtgggagtactctttttcttagccaaagaatgacaggagaaaatagt
gatttatagaacaaatgattatttatgaatgaaatatgacatagcttatt
tccaaagggcacatttgatgcatatttttcctttcctatgttagacgaac
atagacagcaacaatagctgctatatgtgttcctgtccctggtccattct
ggagtatggcgagctcttgtgatgccttttcccatctcgctttagccaca
aggta
gaattctacctttcccatgccatagcctttctctttaattttaccctctt
gtgtttgcttgagtgtccatgaattttcagcccttaaagacagagcttgg
tccagttggtgcaatcatgtattctagctccttggtgctgcagctaggcc
tgtgaacacaacctgtaaccagtatttcttaaaggaaaggaactctcttc
agaatattttcacacccagagctcagtgtgggtgaacctgaacaattgca
gagggtttagggaaacttgagcagtgggtgttttttagaagattaaatta
gctgagctgtttgagcagttggtggtttagcagattaaattagctgagct
gttttgcacaagttgcaggaagaagacattagaatcagtagagctggctt
agagctacaagcatttaattccacctcagagaacacaaaggaagagattt
ttacaaagctagcttgcatcacttttaatatcatcttcttctaaatttct
aagttgtgaatatatacatatttcaatatttaaggatgtcatactattaa
tcttttaaaatcattttcttctaccaggagaaaaattttgcataaatttt
ttttctgttttgctcaaagaactcagtaaaccatatttaactatagttta
ttttaaaaaaaaagtgatgaaacgttttcaattgtattttgtattttaga
gacaaatatacatcaaaaatataatgtagtaaacagtaaaaagtgtatgg
taataaaacccaagttagatacagattttgaggacaaaaaaaaagcattc
tggaaatccatatatagaagttaccatgtgacaagatgcagctagatgtc
tttagctcttctcagataggctcttcccaaagctggggagccccaggttt
atcattgctcttacagtgaacgacttagcctataagatgctgcatctaat
gctaactcttcaaaagaatgcttcatattgaagccatggtggagactgcc
ccatgttctttaagtgggaacaaccagaattcacacatttgtggaatgtt
tcttaaatgaaagctaactttcctcgaaatcaacttgatctgtctgacta
ctaaacattcaatgggagcccattgttcccttgcttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14088784_14089897
seq2: B6Ng01-046P02.b_47_1151

seq1  GAATTCCTCTTGGCCTGGCCTGACTCCATCAGTGTTCCCAATTAGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGCCTGGCCTGACTCCATCAGTGTTCCCAATTAGCCTAG  50

seq1  TAGCCTTTGGTATCAAATGCTAAGAAAATCAGATGATGTTCCATTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTGGTATCAAATGCTAAGAAAATCAGATGATGTTCCATTTTGTT  100

seq1  CAGATGACACTTAAATGCAGTGTATAAACTGAGCATGCTGTAGGGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACACTTAAATGCAGTGTATAAACTGAGCATGCTGTAGGGACCTG  150

seq1  CCATGCTAAGTTTTCAACTACCTTTCTATGCTGCATTGTCTTTATAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAAGTTTTCAACTACCTTTCTATGCTGCATTGTCTTTATAGTGA  200

seq1  GACCCATGGTGTTTTTTAAAAAGGCCATTCTGACTTTGCTAAATTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGGTGTTTTTTAAAAAGGCCATTCTGACTTTGCTAAATTGAAAA  250

seq1  ACAGGGAAATGAAGGCAAAGCTCCAGGCACAAATTTCCAGCCTGTATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATGAAGGCAAAGCTCCAGGCACAAATTTCCAGCCTGTATCCC  300

seq1  ACTCAGTCATCCTTCTCTTTAGTAAATCCAAAACACAGAGATATTGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCATCCTTCTCTTTAGTAAATCCAAAACACAGAGATATTGCTCC  350

seq1  AAAGCCTGTGTTTGAACCACGAGCTGCATGTATGCTGCTCTGCGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGTGTTTGAACCACGAGCTGCATGTATGCTGCTCTGCGCACACA  400

seq1  CTGTCTATGGGTAGATTGTCTTTCCTGGGGCCCCAGGGCAGGCTCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGGGTAGATTGTCTTTCCTGGGGCCCCAGGGCAGGCTCAGCCT  450

seq1  TCCTGAGCCAGACATCAGTTTCTGTCGGAAAGCAGAGACACAAAGCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCCAGACATCAGTTTCTGTCGGAAAGCAGAGACACAAAGCCCCC  500

seq1  TTTAATGCCCCTGCAATGAGCGGTAAGATGAAACATGCCTGCTGATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCCCTGCAATGAGCGGTAAGATGAAACATGCCTGCTGATGGGT  550

seq1  AACCTATCTGTCCCCAAAGACACTGTTCCTCAGAACCCAGCATTTGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCTGTCCCCAAAGACACTGTTCCTCAGAACCCAGCATTTGTTGG  600

seq1  CTCTGGGTGGAGGCTTTTAGCATTTGCAGGATGGTAGGAGATTTGGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTGGAGGCTTTTAGCATTTGCAGGATGGTAGGAGATTTGGCCCA  650

seq1  TAGCCCTTCTGTTGATTGTCTCCATCCCGAGCCAGAATAATCAATTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTCTGTTGATTGTCTCCATCCCGAGCCAGAATAATCAATTACCA  700

seq1  GTTCCCTTTCTTCATCTCTTCACTAATTATTTTTGCATATTTCCCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTTCTTCATCTCTTCACTAATTATTTTTGCATATTTCCCTCTGA  750

seq1  TTCTTGGGAATCAGAGATGATGGGTATCATTTTCATATCACTGAGATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGAATCAGAGATGATGGGTATCATTTTCATATCACTGAGATTCC  800

seq1  TTAACAGCATAAAGACAGTCACAAACACTTCTGCCCTTAGTAGGACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCATAAAGACAGTCACAAACACTTCTGCCCTTAGTAGGACTTCA  850

seq1  AATGTGGGAGTACTCTTTTTCTTAGCCAAAGAATGACAGGAGAAAATAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGAGTACTCTTTTTCTTAGCCAAAGAATGACAGGAGAAAATAGT  900

seq1  GATTTATAGAACAAAATGATTATTTATGAATGAAATAATGACATAGCTTA  950
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  GATTTATAGAAC-AAATGATTATTTATGAATGAAAT-ATGACATAGCTTA  948

seq1  TTTCCAAAGGGCACATTTGATGCAATATTTTTTCCTTTCCTATGTTAAAG  1000
      ||||||||||||||||||||||| ||| ||||||||||||||||||  ||
seq2  TTTCCAAAGGGCACATTTGATGC-ATA-TTTTTCCTTTCCTATGTT--AG  994

seq1  ACAAAAACAAATAGACAAGCAAACAATAAGGCTGCTATATGTG-TCCTGT  1049
      || |    | |||||| ||| |||||||  ||||||||||||| ||||||
seq2  ACGA----ACATAGAC-AGC-AACAATA--GCTGCTATATGTGTTCCTGT  1036

seq1  CCCCTGGTCCA-TCT-GAGTATGGC-AGCTC-TGTGATGCCTTTTCCCAT  1095
       |||||||||| ||| ||||||||| ||||| ||||||||||||||||||
seq2  -CCCTGGTCCATTCTGGAGTATGGCGAGCTCTTGTGATGCCTTTTCCCAT  1085

seq1  CT-GCTATAGCAACAAGGTA  1114
      || ||| |||| ||||||||
seq2  CTCGCTTTAGCCACAAGGTA  1105

seq1: chr1_14223569_14224719
seq2: B6Ng01-046P02.g_66_1205 (reverse)

seq1  TTCTAAGCAAGGAGAACAATGGGCTCCAAATGAATGTTTTAAGTAGTCAG  50
      |||||||||||| |||||||||||||| | |||||||||  |||||||||
seq2  TTCTAAGCAAGG-GAACAATGGGCTCCCATTGAATGTTT--AGTAGTCAG  47

seq1  ACAGATTCAAAGTTGTATTTTCGAGGAAAGTTTAGCCTTCCATTTTAAGA  100
      ||||||   ||||||   |||||||||||| ||||| |||   |||||||
seq2  ACAGAT--CAAGTTG--ATTTCGAGGAAAG-TTAGCTTTC--ATTTAAGA  90

seq1  AACATTCCAC-AATGTGTGGAATCTGGGTGGTCCCCACCTAAAGAACATG  149
      |||||||||| |||||||| | ||| ||| || ||||| |||||||||||
seq2  AACATTCCACAAATGTGTGAATTCT-GGTTGTTCCCACTTAAAGAACATG  139

seq1  GGGCAGTCTCCACCATGGCTTCAATATGAAGCATTCTTTTGAAGAGGTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGCAGTCTCCACCATGGCTTCAATATGAAGCATTCTTTTGAAGA-GTTA  188

seq1  GCATTAGATGCAGCATCTTATAGGCTAAGTCCTTCACTGTAAGAGCAATG  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCATTAGATGCAGCATCTTATAGGCTAAGTCGTTCACTGTAAGAGCAATG  238

seq1  ATAAACCTGGGGCTCCCCAGCTTTGGGAAGAGCCTATCTGAGAAGAGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTGGGGCTCCCCAGCTTTGGGAAGAGCCTATCTGAGAAGAGCTA  288

seq1  AAGACATCTAGCTGCATCTTGTCACATGGTAACTTCTATATATGGATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTAGCTGCATCTTGTCACATGGTAACTTCTATATATGGATTTC  338

seq1  CAGAATGCTTTTTTTTTGTCCTCAAAATCTGTATCTAACTTGGGTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCTTTTTTTTTGTCCTCAAAATCTGTATCTAACTTGGGTTTTAT  388

seq1  TACCATACACTTTTTACTGTTTACTACATTATATTTTTGATGTATATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATACACTTTTTACTGTTTACTACATTATATTTTTGATGTATATTTG  438

seq1  TCTCTAAAATACAAAATACAATTGAAAACGTTTCATCACTTTTTTTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAATACAAAATACAATTGAAAACGTTTCATCACTTTTTTTTTAA  488

seq1  AATAAACTATAGTTAAATATGGTTTACTGAGTTCTTTGAGCAAAACAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTATAGTTAAATATGGTTTACTGAGTTCTTTGAGCAAAACAGAA  538

seq1  AAAAAATTTATGCAAAATTTTTCTCCTGGTAGAAGAAAATGATTTTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTATGCAAAATTTTTCTCCTGGTAGAAGAAAATGATTTTAAAA  588

seq1  GATTAATAGTATGACATCCTTAAATATTGAAATATGTATATATTCACAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATAGTATGACATCCTTAAATATTGAAATATGTATATATTCACAAC  638

seq1  TTAGAAATTTAGAAGAAGATGATATTAAAAGTGATGCAAGCTAGCTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTAGAAGAAGATGATATTAAAAGTGATGCAAGCTAGCTTTGT  688

seq1  AAAAATCTCTTCCTTTGTGTTCTCTGAGGTGGAATTAAATGCTTGTAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCTTCCTTTGTGTTCTCTGAGGTGGAATTAAATGCTTGTAGCT  738

seq1  CTAAGCCAGCTCTACTGATTCTAATGTCTTCTTCCTGCAACTTGTGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGCTCTACTGATTCTAATGTCTTCTTCCTGCAACTTGTGCAAA  788

seq1  ACAGCTCAGCTAATTTAATCTGCTAAACCACCAACTGCTCAAACAGCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGCTAATTTAATCTGCTAAACCACCAACTGCTCAAACAGCTCA  838

seq1  GCTAATTTAATCTTCTAAAAAACACCCACTGCTCAAGTTTCCCTAAACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTAATCTTCTAAAAAACACCCACTGCTCAAGTTTCCCTAAACCC  888

seq1  TCTGCAATTGTTCAGGTTCACCCACACTGAGCTCTGGGTGTGAAAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTGTTCAGGTTCACCCACACTGAGCTCTGGGTGTGAAAATATT  938

seq1  CTGAAGAGAGTTCCTTTCCTTTAAGAAATACTGGTTACAGGTTGTGTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGAGTTCCTTTCCTTTAAGAAATACTGGTTACAGGTTGTGTTCA  988

seq1  CAGGCCTAGCTGCAGCACCAAGGAGCTAGAATACATGATTGCACCAACTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTAGCTGCAGCACCAAGGAGCTAGAATACATGATTGCACCAACTG  1038

seq1  GACCAAGCTCTGTCTTTAAGGGCTGAAAATTCATGGACACTCAAGCAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCTCTGTCTTTAAGGGCTGAAAATTCATGGACACTCAAGCAAAC  1088

seq1  ACAAGAGGGTAAAATTAAAGAGAAAGGCTATGGCATGGGAAAGGTAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGTAAAATTAAAGAGAAAGGCTATGGCATGGGAAAGGTAGAAT  1138

seq1  TC  1151
      ||
seq2  TC  1140