BAC Information

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BAC

Clone NameB6Ng01-047A22
Chromosome1 (Build37)
Map Location 177,893,291 - 177,894,162
singlet/doubletsinglet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104
Downstream geneB020018G12Rik, Cep170, Sdccag8, LOC666235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047A22.b
ACCDH872027
length869
definitionDH872027|Mus musculus domesticus DNA, BAC clone: B6Ng01-047A22, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatatcatttcccccgacattctcgctttttgaactaatgctgaa
atgaatccaaggatgatgtaaaacaagaacatgtttgtcagaagacagac
tgataccctcaaaaccctggtatcagaagacaaggaacaaggggacagaa
atgagtgtttttcagaagtcttgaaggctggcatgaaatggaggtgcctg
tgctcagctgcctggataggtcttatagaggatatgtcagggcagatgct
tggttctgtctgcatcttctccccccttcctctaattccagaattcccca
atattaaaggaaagggctcacctcatgttattcttcttaaaaccagtgct
gatgggtcagcagaaaagattctaaaaccagtaagaatcaggagacaaga
accaagtcgtaaaatgtgtttgcagtcattaaaaactaactcctaggcca
gaacaacattctctgtcagagctcatagatacaaaagtcttaaatttaat
atacagggctaagatgtagttagctagatattacatgtcattcagagaac
attttaaataagtgtgctttttatttctccttaataaaagaaaagatgta
gtaaattgttgtctttcctctagtccttcctgcatttggtctgaagccat
gtgtgtctgtgactgagctatacgctcagcggctccctcccggtggcatt
ggccatggcacgttgcttggagggagacttgagtttggacaagcttgaac
agaacggttgttggtgggctgtatggatttagtctaacgcgaataccagt
ccctcctcaacacgtacttcactagctttatgatgctcctgttgctctca
cctctgcctggttgatgac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177893291_177894162
seq2: B6Ng01-047A22.b_46_914

seq1  GAATTCATATCATTTCCCCAAGACATTCTCACTTTTTGAACTAATGCTGA  50
      |||||||||||||||||||  ||||||||| |||||||||||||||||||
seq2  GAATTCATATCATTTCCCC-CGACATTCTCGCTTTTTGAACTAATGCTGA  49

seq1  GATGAATCCAAGGATGATGTAAAACAAGAACATGTTTGTCAGAAGACAGA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCCAAGGATGATGTAAAACAAGAACATGTTTGTCAGAAGACAGA  99

seq1  CTGATACCCTCAAAACCCTGGTATCAGAAGACAAGGAACAAGGGGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCCTCAAAACCCTGGTATCAGAAGACAAGGAACAAGGGGACAGA  149

seq1  AATGAGTGTTTTTCAGAAGTCTTGAAGGCTGGCATGAAATGGAGGTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGTTTTTCAGAAGTCTTGAAGGCTGGCATGAAATGGAGGTGCCT  199

seq1  GTGCTCAGCTGCCTGGATAGGTCTTAGAGAGGATATGTCAGGGCAGATGC  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGCTCAGCTGCCTGGATAGGTCTTATAGAGGATATGTCAGGGCAGATGC  249

seq1  TTGGTTCTGTCTGCATCTTCTCCCCCCTTCCTCTAATTCCAGAATTCAGC  300
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TTGGTTCTGTCTGCATCTTCTCCCCCCTTCCTCTAATTCCAGAATTCCCC  299

seq1  AATATTAAAGGAAAGGGCTCACCTCATGTTATTCTTCTTAAAACCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAGGAAAGGGCTCACCTCATGTTATTCTTCTTAAAACCAGTGC  349

seq1  TGATGGGTCAGCAGAAAAGATTCTAAAACCAGTAAGAATCAGGAGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTCAGCAGAAAAGATTCTAAAACCAGTAAGAATCAGGAGACAAG  399

seq1  AACCAAGTCGTAAAATGTGTTTGCAGTCATTAAAAACTAACTCCTAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTCGTAAAATGTGTTTGCAGTCATTAAAAACTAACTCCTAGGCC  449

seq1  AGAACAACATTCTCTGTCAGAGCTCATAGATACAAAAGTCTTAAATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACATTCTCTGTCAGAGCTCATAGATACAAAAGTCTTAAATTTAA  499

seq1  TATACAGTGCTAAGATGTTGTTAGCTAGATATTACATGTCATTCAGAGAA  550
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TATACAGGGCTAAGATGTAGTTAGCTAGATATTACATGTCATTCAGAGAA  549

seq1  CATTTTAAATAAGTGTGCTTTTTATTTCTCCTTAATAAAAGAAAAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATAAGTGTGCTTTTTATTTCTCCTTAATAAAAGAAAAGATGT  599

seq1  AGTAAATTGTTGTCTTTCCTCTAGTCCTTCCTGCATTTGGTCTGAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAAATTGTTGTCTTTCCTCTAGTCCTTCCTGCATTTGGTCTGAAGCCA  649

seq1  TGTGTGTCTGTTAGTGAGCTATACGCTCAGCGGCTCCCTCCCGGTGGCAT  700
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGACTGAGCTATACGCTCAGCGGCTCCCTCCCGGTGGCAT  699

seq1  TGGCCATGGCAGGTTGCTTGGAGGGAGACTTGAGTTTGGACAGGCTTGAA  750
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TGGCCATGGCACGTTGCTTGGAGGGAGACTTGAGTTTGGACAAGCTTGAA  749

seq1  CAGTTCGGTTGTTTGGTGGGCTGTATGGATTTGGCATAAGGCGAATACCA  800
      |||  |||||| |||||||||||||||||||| |  ||| ||||||||||
seq2  CAGAACGGTTG-TTGGTGGGCTGTATGGATTTAGTCTAACGCGAATACCA  798

seq1  GTCCCTCTCAAACACGTCCTTCAGTTGCTTAATGATGCTCCTGTTGTCTC  850
      |||||||   ||||||| ||||| | |||| ||||||||||||||| |||
seq2  GTCCCTCCTCAACACGTACTTCACTAGCTTTATGATGCTCCTGTTG-CTC  847

seq1  TCACATCTGCCTGGTTGATGAC  872
      |||| |||||||||||||||||
seq2  TCACCTCTGCCTGGTTGATGAC  869