BAC Information

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BAC

Clone NameB6Ng01-047C08
Chromosome1 (Build37)
Map Location 152,484,327 - 152,485,464
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C08.bB6Ng01-047C08.g
ACCDH872088DH872089
length1,1581,120
definitionDH872088|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C08, 5' end.DH872089|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacctgaggaatactgaatggctgagaaacacctgaaaaaatg
tttagcatccttaatcattagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattgaggtgacagc
agatactggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatggtactaccgtcgggtcccgcaatacctctcctgggc
atatatccagaagatgtcccaactagtaagaaagaaacatgctccactat
gttcatagcagcattatttataatagccagatgctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtatatttacacaatg
gagtactactcagctattcaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtcaggtaacccaatcacaaa
agaactcaaatgatatgaactaactgataagtggatattagcccagaaac
ttagaatacccaagatataagttacaatttgcaaaacacatgaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagaca
aaaggatggaccatctagagactgccatatccagggatccatcccataat
cagcctctaaatgctgacaccattgcatacactagcaagattttatcgaa
aggacccttgttgagactatgccagggcctaccaaacacataagtggatg
ctcacagtcagcttatgggatggattacaggccccccaatggaagaacta
gagaaagtacccaggagctaaagggatctgcaaccctttaggtggacact
ttatgaactaccagtacccagagctcttgactctagctgcatatgtatca
aagatgctacttgtcatcactggaaagaggaggctcatggtcgtgcactt
attggcccagttcgagagaacccagccaaaagtgggactgggtgggtagg
ggaagctg
gaattcattttctagagaatatttgaatacatttgatttttctcattgcc
tctttaaaacttctaactgatctttgccaactcttgtttaatctagattg
atgatattcccttcacttgtcttcaggttgccaaacttgacacatcactg
gcggctaatcaaaaattacttccaccaggaaatatttctcaacaacttgc
ttcattctggatagtgaaattcattacttatagttacagtttgaaatgtg
ctctgctgataagtttgaaaaattaagttgatgtttttagactctggaga
gtcagtgacatgtgctacgcttcagaagaggactgtatagtagcaaagct
agatcagtgtatttgattgtaggattaacatgtcttgcctggagcaagcc
acagacttagtttatgatagaagataattcaagaaataaatgtctatacc
attcaattcagaatttgctacaaagacgtatattccatgcagagagctga
caggtgcatccaaaaccaacattcagatgtgtaaaatctaatgtaattgc
tgtaaaaggtgtgtacaaatatcaagacatcacatcatgagcaggagaag
cagaggcaagctcgaggcttggtcatgttccactttccacctcattgctg
tttcaagtggtttgcttgactcacatctggttgcatctcccatgccattt
tatttccttgagagtgagagcaaatgttcttgagggattttgatccagcg
tatggcttgaaagtttagcctaacctttctgggtttctgctgtttggatt
gaaaggagaagaggtcactgttccctgccacaggctgtgagctgtgctga
ggtctactgctttcattactcgccatggttagtagtacctgtgcctcttt
cagataaatcttgctattctatgtcatgcagaatgaacattgtaaagatt
taattttgtatatgtgtttataaatcaacacaaacatgccatgtactatt
ttcttttggactcttcagaatacgtataatgtatgtatatattactgctg
ttaatttattgatgttacaatgaggcatctggacactgataggaaattca
taattaaaactggcctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152484327_152485464
seq2: B6Ng01-047C08.g_68_1187

seq1  GAATTCATTTTCTAGAGAATATTTGAATACATTTGATTTTTCTCATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTAGAGAATATTTGAATACATTTGATTTTTCTCATTGCC  50

seq1  TCTTTAAAACTTCTAACTGATCTTTGCCAACTCTTGTTTAATCTAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAACTTCTAACTGATCTTTGCCAACTCTTGTTTAATCTAGATTG  100

seq1  ATGATATTCCCTTCACTTGTCTTCAGGTTGCCAAACTTGACACATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTCCCTTCACTTGTCTTCAGGTTGCCAAACTTGACACATCACTG  150

seq1  GCGGCTAATCAAAAATTACTTCCACCAGGAAATATTTCTCAACAACTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTAATCAAAAATTACTTCCACCAGGAAATATTTCTCAACAACTTGC  200

seq1  TTCATTCTGGATAGTGAAATTCATTACTTATAGTTACAGTTTGAAATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGGATAGTGAAATTCATTACTTATAGTTACAGTTTGAAATGTG  250

seq1  CTCTGCTGATAAGTTTGAAAAATTAAGTTGATGTTTTTAGACTCTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGATAAGTTTGAAAAATTAAGTTGATGTTTTTAGACTCTGGAGA  300

seq1  GTCAGTGACATGTGCTACGCTTCAGAAGAGGACTGTATAGTAGCAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGACATGTGCTACGCTTCAGAAGAGGACTGTATAGTAGCAAAGCT  350

seq1  AGATCAGTGTATTTGATTGTAGGATTAACATGTCTTGCCTGGAGCAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTGTATTTGATTGTAGGATTAACATGTCTTGCCTGGAGCAAGCC  400

seq1  ACAGACTTAGTTTATGATAGAAGATAATTCAAGAAATAAATGTCTATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTAGTTTATGATAGAAGATAATTCAAGAAATAAATGTCTATACC  450

seq1  ATTCAATTCAGAATTTGCTACAAAGACGTATATTCCATGCAGAGAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTCAGAATTTGCTACAAAGACGTATATTCCATGCAGAGAGCTGA  500

seq1  CAGGTGCATCCAAAACCAACATTCAGATGTGTAAAATCTAATGTAATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCATCCAAAACCAACATTCAGATGTGTAAAATCTAATGTAATTGC  550

seq1  TGTAAAAGGTGTGTACAAATATCAAGACATCACATCATGAGCAGGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGGTGTGTACAAATATCAAGACATCACATCATGAGCAGGAGAAG  600

seq1  CAGAGGCAAGCTCGAGGCTTGGTCATGTTCCACTTTCCACCTCATTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGCTCGAGGCTTGGTCATGTTCCACTTTCCACCTCATTGCTG  650

seq1  TTTCAAGTGGTTTGCTTGACTCACATCTGGTTGCATCTCCCATGCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGGTTTGCTTGACTCACATCTGGTTGCATCTCCCATGCCATTT  700

seq1  TATTTCCTTGAGAGTGAGAGCAAATGTTCTTGAGGGATTTTGATCCAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTGAGAGTGAGAGCAAATGTTCTTGAGGGATTTTGATCCAGCG  750

seq1  TATGGCTTGAAAGTTTAGCCTAACCTTTCTGGGTTTCTGCTGTTTGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTGAAAGTTTAGCCTAACCTTTCTGGGTTTCTGCTGTTTGGATT  800

seq1  GAAAGGAGAAGAGGTCACTGTTCCCTGCCACAGGCTGTGAGCTGTGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAAGAGGTCACTGTTCCCTGCCACAGGCTGTGAGCTGTGCTGA  850

seq1  GGTCTACTGCTTTCATTACTCGCCATGGTTAGTTAGTACCTGTGCCTCTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTCTACTGCTTTCATTACTCGCCATGGTTAG-TAGTACCTGTGCCTCTT  899

seq1  TCAAGATAAATCTTGCTATTCTATGTCATGCAGAATGAACATTGTAAAGA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-AGATAAATCTTGCTATTCTATGTCATGCAGAATGAACATTGTAAAGA  948

seq1  TTTAATTTTGTTATATTGTGTTTTATAAACCAACACAAACATGCCATGTA  1000
      |||||||||| |||| |||| |||||||| ||||||||||||||||||||
seq2  TTTAATTTTG-TATA-TGTG-TTTATAAATCAACACAAACATGCCATGTA  995

seq1  CTATTTTCTTTTGGACTC-TCAGAATACGTAATTAATGTTATTGTTATTA  1049
      |||||||||||||||||| ||||||||||||  ||||| |||   ||   
seq2  CTATTTTCTTTTGGACTCTTCAGAATACGTA--TAATG-TATGTATA---  1039

seq1  TTATTACTGCTGTTATTTTATTTGATGTTTACAAATGAGGGCATCTGGAC  1099
       |||||||||||||| |||| |||||| |||| ||||| |||||||||||
seq2  -TATTACTGCTGTTAATTTA-TTGATG-TTAC-AATGA-GGCATCTGGAC  1084

seq1  ACTGATAAAGAATATTCATAATATAAAATTTGCCTCTAT  1138
      ||||||  || | ||||||||| ||||| | ||||||||
seq2  ACTGAT--AGGAAATTCATAAT-TAAAACTGGCCTCTAT  1120