BAC Information

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BAC

Clone NameB6Ng01-047C24
Chromosome1 (Build37)13 (Build37)
Map Location 50,832,131 - 50,832,71927,730,533 - 27,731,481
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C24.bB6Ng01-047C24.g
ACCDH872118DH872119
length884936
definitionDH872118|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C24, 5' end.DH872119|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,131 - 50,832,719)(27,730,533 - 27,731,481)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgatttctttatatatattggatattagtccc
ttatacaatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcacatttatcgattctcgatcttatagcacaagccactgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggctttttcctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcagttctc
atttttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttatcaaagatcaagt
gaccataggtgtgtgggttaatctctggatcttcaattctgttccattgc
tctacttgtctgtcactataccaataccatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggtttgttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgactttggcaagacagccattt
ttacacattgatcctgccattccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagactt
gaattctgatctcatcattttgccagtctctgatctcatctatggagcca
gtctctgttaacatatttacttagcacattcatgatatccaagagagaag
atgggcattgcagtgaatcagaaggaatacatggaatgagtctaaagtgt
gataatttaagagggggaggaacaaacagcaacaccactatattagcttc
tcatagacccctgaatgctgagaatcatacatagcttttatttaaatcat
atgtaaaggtttctggtgcagaagtttattcactggaatggctggtttag
aaatgaaacagtttctatgttcatgaagactgtatgttttctgttaaagg
ccagttaatatcaagaaggatatattataaatggttttagtgttgacgtg
ggcatccatagaatgtctcttttttgcaacaaatatgcatttgtgttgtc
tgttgtcacacatttctttaatgatttcccccttctgatttagctaagtt
catcatcatcatcagactcctatgatcaatttgtaagtaccacatttatt
tccatttttccccaaaagctttcgtgataattacagtacctgaacttata
tgagaaatcagcaaagacatatccagaggtgcattgtgatatttctctct
tatattatcatacatgaagcctttctggcagtaaaaaggaaagtgagaac
ggggaaacttgcaaaacttaattttaattaaaattacaattgtaaactaa
aagtatacttagtgttgtgactagggaaggcctcctatatatgaatttaa
ctttgaaggtgaaaaaaaaacattggcattttcacttagttcactgaaga
tccccaagtaggtgaactgcattataacagtttgtgtagagatagaagca
ttcaaatgaaacatatcagagagaaacactattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832131_50832719
seq2: B6Ng01-047C24.b_43_632 (reverse)

seq1  TAAAAACTGCATGGTGCTGGTATAGAGACATACAAGTAGACCAATGGAAT  50
      |||||||||||||||  |||||||| |||| ||||||||| |||||||| 
seq2  TAAAAACTGCATGGTATTGGTATAGTGACAGACAAGTAGAGCAATGGAAC  50

seq1  AAAATTGAAGACCCAGAAATGAACCCACACATCTATGGTCACTTAATTTT  100
      | ||||||||| ||||| || |||||||||| |||||||||||| || ||
seq2  AGAATTGAAGATCCAGAGATTAACCCACACACCTATGGTCACTTGATCTT  100

seq1  TGACAGGGGAGCTAAAGCCATTCAGTGGAAAAAAGACAGCATTTTCAACA  150
      ||| | |||||||||| |||| ||||||||||||||||||||||||||||
seq2  TGATAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACA  150

seq1  AATGGTGCTGGCACAACTGGCGGTTATCATGCAGAAGAATGTGAAATGAT  200
      ||||||||||||||||||||||||||||||| |||| |||| ||| ||||
seq2  AATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAAAATGAGAACTGAT  200

seq1  TCATTCCTATCTCCTTGTAGTAATGCCAAATCTAAGTGGATTAAGGAACT  250
       |||| ||||||||||||| ||| | ||||||||||||||||||||||||
seq2  CCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACT  250

seq1  CCACTTAAAACCAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAA  300
      |||| |||||||||||||||||||||||||||||||||| || || ||||
seq2  CCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGAAAAA  300

seq1  GCCTCCAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATG  350
      ||||| |||||||||| |||||||||||||||||||||||||||||| ||
seq2  GCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACAGCAGTG  350

seq1  GCTTGTGCTGTAAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCA  400
      ||||||||| |||||| |||||| || ||||| || |||||||| |||||
seq2  GCTTGTGCTATAAGATCGAGAATCGATAAATGTGACCTCATAAAATTGCA  400

seq1  AACCTTCTGTAAGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAA  450
      || |||||| || |||||||||||| ||||||||||||||||||||||||
seq2  AAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAA  450

seq1  CAGATTGGGAGAGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGA  500
      |||||||||| ||||||||||||||||| ||||   ||| |||||||| |
seq2  CAGATTGGGAAAGGATCTTTACCTATCCCAAATTGTATAAGGGACTAATA  500

seq1  TCCAATATATATAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAA  550
      |||||||||||||||||| | ||||||||||| |||||||||||||||||
seq2  TCCAATATATATAAAGAAATCAAGAAGGTGGACTCCAGAAAATCAAATAA  550

seq1  CCCCATT-AAAAATGGGGCTCAGAGCTGAACAATGAATTC  589
      ||||||| ||||||||||||||||||||||||| ||||||
seq2  CCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  590

seq1: chr13_27730533_27731481
seq2: B6Ng01-047C24.g_65_1000 (reverse)

seq1  AATAAATTAGTGTTTTCTTCCCTCT-TGATATGGTTTCCATTTGGATTGC  49
      |||||  ||||||||      |||| |||||||  || ||||| || |||
seq2  AATAA--TAGTGTTT------CTCTCTGATATG--TTTCATTT-GAATGC  39

seq1  TTCTATCTCCTACACAAACTGGTTATAATGCAGTTCAACCTACTTGGGGA  99
      |||||||| ||||||||||| ||||||||||||||| |||||||||||||
seq2  TTCTATCT-CTACACAAACT-GTTATAATGCAGTTC-ACCTACTTGGGGA  86

seq1  TCTTCAGTGAACTAAGTGAAAAATGCCAATG-TTTTTTGTCACCTTCAAA  148
      |||||||||||||||||| |||||||||||| |||||| |||||||||||
seq2  TCTTCAGTGAACTAAGTG-AAAATGCCAATGTTTTTTTTTCACCTTCAAA  135

seq1  GTTAAATTCATATATAGGAGGCCTTCCCTAGTCACAACACTAAGTATACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCATATATAGGAGGCCTTCCCTAGTCACAACACTAAGTATACT  185

seq1  TTTAGTTTACAATTGTAATTTTAATTAAAATTAAAGTTTTGCAAGTTTCC  248
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAGTTTACAATTGTAATTTTAATTAAAATT-AAGTTTTGCAAGTTTCC  234

seq1  CCGTTCTCACTTTCCTTTTTACTGCCAG-AAGGCTTCATGTATGATAATA  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCGTTCTCACTTTCCTTTTTACTGCCAGAAAGGCTTCATGTATGATAATA  284

seq1  TAAGAGAGAAATATCACAATGCACCTCTGGATATGTCTTTGCTGATTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAAATATCACAATGCACCTCTGGATATGTCTTTGCTGATTTCT  334

seq1  CATATAAGTTCAGGTACTGTAATTATCACGAAAGCTTTTGGGGAAAAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGTTCAGGTACTGTAATTATCACGAAAGCTTTTGGGGAAAAATG  384

seq1  GAAATAAATGTGGTACTTACAAATTGATCATAGGAGTCTGATGATGATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGTGGTACTTACAAATTGATCATAGGAGTCTGATGATGATGA  434

seq1  TGAACTTAGCTAAATCAGAAGGGGGAAATCATTAAAGAAATGTGTGACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGCTAAATCAGAAGGGGGAAATCATTAAAGAAATGTGTGACAA  484

seq1  CAGACAACACAAATGCATATTTGTTGCAAAAAAGAGACATTCTATGGATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACACAAATGCATATTTGTTGCAAAAAAGAGACATTCTATGGATG  534

seq1  CCCACGTCAACACTAAAACCATTTATAATATATCCTTCTTGATATTAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTCAACACTAAAACCATTTATAATATATCCTTCTTGATATTAACT  584

seq1  GGCCTTTAACAGAAAACATACAGTCTTCATGAACATAGAAACTGTTTCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAACAGAAAACATACAGTCTTCATGAACATAGAAACTGTTTCAT  634

seq1  TTCTAAACCAGCCATTCCAGTGAATAAACTTCTGCACCAGAAACCTTTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACCAGCCATTCCAGTGAATAAACTTCTGCACCAGAAACCTTTAC  684

seq1  ATATGATTTAAATAAAAGCTATGTATGATTCTCAGCATTCAGGGGTCTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTAAATAAAAGCTATGTATGATTCTCAGCATTCAGGGGTCTAT  734

seq1  GAGAAGCTAATATAGTGGTGTTGCTGTTTGTTCCTCCCCCTCTTAAATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTAATATAGTGGTGTTGCTGTTTGTTCCTCCCCCTCTTAAATTA  784

seq1  TCACACTTTAGACTCATTCCATGTATTCCTTCTGATTCACTGCAATGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTTAGACTCATTCCATGTATTCCTTCTGATTCACTGCAATGCCC  834

seq1  ATCTTCTCTCTTGGATATCATGAATGTGCTAAGTAAATATGTTAACAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCTCTTGGATATCATGAATGTGCTAAGTAAATATGTTAACAGAG  884

seq1  ACTGGCTCCATAGATGAGATCAGAGACTGGCAAAATGATGAGATCAGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCCATAGATGAGATCAGAGACTGGCAAAATGATGAGATCAGAAT  934

seq1  TC  949
      ||
seq2  TC  936