BAC Information

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BAC

Clone NameB6Ng01-047F15
Chromosome1 (Build37)
Map Location 133,249,111 - 133,378,698
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042826, LOC100042821
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F15.bB6Ng01-047F15.g
ACCDH872239DH872240
length1,1671,028
definitionDH872239|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F15, 5' end.DH872240|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,249,111 - 133,250,321)(133,377,642 - 133,378,698)
sequence
gaattccagtgccgtactctctgcagaggacagagtgttgaaaaagcata
ggcctctaacctagaaagctagtttatccctctggcctgaaaaaggggaa
aataccagctttgttgctggttatgtgctaaacagataatacacttcaca
catatctggtactgtgtagacttgaagctaacaccaatcacaagcatcct
ccaatctactgacctctacctttcagcttctcacatttcttttcctgaaa
tattacccttcactttcacctgctggaattggactcactctttaagatcc
atattaaattctcagactctgggaagccaaccagccctgcattcctggtc
ccacttgaactcaactgcattcatcctcatatgacccccaatacacgcag
tcattccgaggcctgcaatttcatatcaccccacccagaatgcaggtatc
ttagagttttccagcatcttattcctgtttacaatttttcctagtaggtc
ttattcatggaaaacattcaataaagttgactgatggataccacaggcaa
agactcaagcttttcaggaaatcatctagtgggctgagtgctgacccatg
tgttctgctgcatagtctaagaacatcagggagcaatacctctatcaccc
ttctgtagcttctctgtgccaatgagtcagggtcaaacatacaatgtgcc
ctccggttttaccatgctttcagctaacccaggagacatggaaagggcct
tggtcatctacatatttgtaggggaaaactcagccttcaaaaagaagccg
tatctggcaggttaattgaaatttgagtatttcccatgagaattccaaca
gtagagagacacacagtttgtttataccagaaataaatgctatacaaata
ctataaatgctacacaaatactataaaacttgggagaaataatttttaga
aaatattgaagaacagagcatctcagtgtatgcatagtcatagctcatga
tcctacggctggattctctctcgataattctagagaaactagaacaaaaa
aaaatgagtgcttcgtatccttcaattcttacaggagaaagaaaaaaact
gttctctataaaaccttatgggacaggttcttcatgtcagtccagtaatg
atcacagacttaggtat
gaattccattgaactttaaaagttaaaaggctggacttgaaatgcatgat
gcgtaactatagcaaaccacagtgagtagctagaaagtatagacaacttc
tggtcactcaatggctacagattaattgacttgaatatattaatgtctgt
taatggtctaatcatttggcttctctgtctgatgtgagatagagagtaat
ttgcccaggttgcatcctcctggaacccccccccccacacacacacctgt
cactgtcctcagatgatcattggtttaacttgatctagattaagtaagtt
aaatatatatcactacttattatttaatactaacaattacacaccatcag
ggtattaataaaaagatacatctttaatttgaacctgataaaagatgggt
gtcttcagagggcctgctatggcatttcctccaagtacattctctgaaaa
ggaccaggcctggatataaaaccattgcacttcctcattgctttatgtat
aaaaagacaatctcatttcccctttttttcttattctagataccacattt
atctggctactccaaaagatcatgaaagaacagaaattttttatcttaac
agtggtacagagaaacttggcatctctttcaccattgataaaaagttttg
agaaacaagtgtagggaaaatactgcctatagacttgaaaaccatttact
tagttaacagaatgctcttaattatgttaactatgtgctttgattattca
aggtctctatgctcttaatatttcagacaatgttctgttgatgctatgaa
ttagccagtagtgtcttcatttgatgagaagaggggaaggtaaaatgaga
catcaattgctcgcagatgagatttacctagcatgtatagattctgagta
tcactgtactcaatcagcacaacaactgtagccagaaaatcatgaagtca
ctatgagtagctctgtagattcccatacctgagtaggaatattagactca
gcaaataatttccagtggtaaagagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133249111_133250321
seq2: B6Ng01-047F15.b_45_1211

seq1  GAATTCCAGTGCCGTACTCTCTGCAGAGGACAGAGTGTTGAAAAAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCGTACTCTCTGCAGAGGACAGAGTGTTGAAAAAGCATA  50

seq1  GGCCTCTAACCTAGAAAGCTAGTTTATCCCTCTGGCCTGAAAAAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAACCTAGAAAGCTAGTTTATCCCTCTGGCCTGAAAAAGGGGAA  100

seq1  AATACCAGCTTTGTTGCTGGTTATGTGCTAAACAGATAATACACTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCTTTGTTGCTGGTTATGTGCTAAACAGATAATACACTTCACA  150

seq1  CATATCTGGTACTGTGTAGACTTGAAGCTAACACCAATCACAAGCATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGTACTGTGTAGACTTGAAGCTAACACCAATCACAAGCATCCT  200

seq1  CCAATCTACTGACCTCTACCTTTCAGCTTCTCACATTTCTTTTCCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTACTGACCTCTACCTTTCAGCTTCTCACATTTCTTTTCCTGAAA  250

seq1  TATTACCCTTCACTTTCACCTGCTGGAATTGGACTCACTCTTTAAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCTTCACTTTCACCTGCTGGAATTGGACTCACTCTTTAAGATCC  300

seq1  ATATTAAATTCTCAGACTCTGGGAAGCCAACCAGCCCTGCATTCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTCTCAGACTCTGGGAAGCCAACCAGCCCTGCATTCCTGGTC  350

seq1  CCACTTGAACTCAACTGCATTCATCCTCATATGACCCCCAATACACGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGAACTCAACTGCATTCATCCTCATATGACCCCCAATACACGCAG  400

seq1  TCATTCCGAGGCCTGCAATTTCATATCACCCCACCCAGAATGCAGGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCGAGGCCTGCAATTTCATATCACCCCACCCAGAATGCAGGTATC  450

seq1  TTAGAGTTTTCCAGCATCTTATTCCTGTTTACAATTTTTCCTAGTAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTTCCAGCATCTTATTCCTGTTTACAATTTTTCCTAGTAGGTC  500

seq1  TTATTCATGGAAAACATTCAATAAAGTTGACTGATGGATACCACAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGGAAAACATTCAATAAAGTTGACTGATGGATACCACAGGCAA  550

seq1  AGACTCAAGCTTTTCAGGAAATCATCTAGTGGGCTGAGTGCTGACCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAGCTTTTCAGGAAATCATCTAGTGGGCTGAGTGCTGACCCATG  600

seq1  TGTTCTGCTGCATAGTCTAAGAACATCAGGGAGCAATACCTCTATCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCTGCATAGTCTAAGAACATCAGGGAGCAATACCTCTATCACCC  650

seq1  TTCTGTAGCTTCTCTGTGCCAATGAGTCAGGGTCAAACATACAATGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCTTCTCTGTGCCAATGAGTCAGGGTCAAACATACAATGTGCC  700

seq1  CTCCGGTTTTACCATGCTTTCAGCTAACCCAGGAGACATGGAAAGGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTTTTACCATGCTTTCAGCTAACCCAGGAGACATGGAAAGGGCCT  750

seq1  TGGTCATCTACATATTTGTAGGGGGAAAACTCAGCCTTCAAAAAAGAAGC  800
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TGGTCATCTACATATTTGTA-GGGGAAAACTCAGCCTTC-AAAAAGAAGC  798

seq1  CGTATCTGGCAGGGTTAATTGAAATTTGAGTATTTCCCATGAGAATTCCA  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTGGCA-GGTTAATTGAAATTTGAGTATTTCCCATGAGAATTCCA  847

seq1  ACAGGTAGAGAGAACACACAGTTTTGTTTATACCAGAAATAAATGCTATA  900
      ||| |||||||| |||||||| ||||||||||||||||||||||||||||
seq2  ACA-GTAGAGAG-ACACACAG-TTTGTTTATACCAGAAATAAATGCTATA  894

seq1  CAAATACTATAAAATGCTACACAAATACTATAAAAACTTGGGAGAAATAA  950
      |||||||||| |||||||||||||||||||| |||||||||||||||| |
seq2  CAAATACTAT-AAATGCTACACAAATACTAT-AAAACTTGGGAGAAAT-A  941

seq1  ATTTTTAGAAAATATTGAAGAACAGAGCATCTCAGTGTATGGGCATTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||  ||||  ||
seq2  ATTTTTAGAAAATATTGAAGAACAGAGCATCTCAGTGTAT--GCAT--AG  987

seq1  TCCATAGCTCATGATTCCCTTACCGGCTGAGATTCTCTCTCAGATAA-TC  1049
      | |||||||||||||  |||   |||||| ||||||||||| ||||| ||
seq2  T-CATAGCTCATGAT--CCT--ACGGCTG-GATTCTCTCTC-GATAATTC  1030

seq1  TAGAGAAAACCTAGAAACAAAAAAAAAATGAGTGCTTCGTATCACTTCAA  1099
      ||||||||  ||||||   |||||||||||||||||||||||| ||||||
seq2  TAGAGAAA--CTAGAA--CAAAAAAAAATGAGTGCTTCGTATC-CTTCAA  1075

seq1  TTTCTTACAGGAGAAAGAAAAACAACTGTTCTCAATAAAACTCCATAATG  1149
       ||||||||||||||||||||| |||||||||| ||||||   | | |||
seq2  -TTCTTACAGGAGAAAGAAAAA-AACTGTTCTCTATAAAA---CCTTATG  1120

seq1  GGAAAACCAAGTTCTCTCATGTCCAGTTTCAGTGTATGTGGCATCACAGA  1199
      |||    || ||||| |||||| ||| | ||||  |||    ||||||||
seq2  GGA----CAGGTTCT-TCATGT-CAG-TCCAGT-AATG----ATCACAGA  1158

seq1  CTTTCTAGGTAT  1211
      ||   |||||||
seq2  CT---TAGGTAT  1167

seq1: chr1_133377642_133378698
seq2: B6Ng01-047F15.g_66_1093 (reverse)

seq1  ATGCTCTTATAACCACCTGGAAATTATTTTGCCTGAGGTCTATATACTTC  50
      |||||||  | |||| |||||||||||||   |||| ||||| ||| |||
seq2  ATGCTCT--TTACCA-CTGGAAATTATTT--GCTGA-GTCTA-ATA-TTC  42

seq1  CCTTAACTCAGGTATGGGAATCTACAGGAGCTACTCATAGTGACTTTCAT  100
      |    ||||||||||||||||||||| ||||||||||||||||| |||||
seq2  C---TACTCAGGTATGGGAATCTACA-GAGCTACTCATAGTGAC-TTCAT  87

seq1  GGATTTTCTGGCTTACAGTTTGTTGTTGCTGATTTGAGGTACAGGTGATT  150
       ||||||||||| ||||| |||||| |||||| |||| ||||| ||||| 
seq2  -GATTTTCTGGC-TACAG-TTGTTG-TGCTGA-TTGA-GTACA-GTGAT-  129

seq1  AACTCAGAATCTTATACATGCTAGGTAAATTCTCCATCTGCGGGCAATTG  200
       |||||||||| ||||||||||||||||| ||| |||||||| |||||||
seq2  -ACTCAGAATC-TATACATGCTAGGTAAA-TCT-CATCTGCGAGCAATTG  175

seq1  ATTGTCTTCATTTTACCTTCCCCTCTTTCTCATCAAATGAAGACACCTAC  250
      | |||| |||||||||||||||||| ||||||||||||||||||| ||||
seq2  A-TGTC-TCATTTTACCTTCCCCTC-TTCTCATCAAATGAAGACA-CTAC  221

seq1  TGGCTAATTCATAGCATCAACAGAACATTGTCTGAAATATTAAGAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATTCATAGCATCAACAGAACATTGTCTGAAATATTAAGAGCATA  271

seq1  GAGACCTTGAATAATCAAAGCACATAGTTAACATAATTAAGAGCATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGAATAATCAAAGCACATAGTTAACATAATTAAGAGCATTCTG  321

seq1  TTAACTAAGTAAATGGTTTTCAAGTCTATAGGCAGTATTTTCCCTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAGTAAATGGTTTTCAAGTCTATAGGCAGTATTTTCCCTACACT  371

seq1  TGTTTCTCAAAACTTTTTATCAATGGTGAAAGAGATGCCAAGTTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAAAACTTTTTATCAATGGTGAAAGAGATGCCAAGTTTCTCTG  421

seq1  TACCACTGTTAAGATAAAAAATTTCTGTTCTTTCATGATCTTTTGGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGTTAAGATAAAAAATTTCTGTTCTTTCATGATCTTTTGGAGTA  471

seq1  GCCAGATAAATGTGGTATCTAGAATAAGAAAAAAAGGGGAAATGAGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAAATGTGGTATCTAGAATAAGAAAAAAAGGGGAAATGAGATTG  521

seq1  TCTTTTTATACATAAAGCAATGAGGAAGTGCAATGGTTTTATATCCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATACATAAAGCAATGAGGAAGTGCAATGGTTTTATATCCAGGC  571

seq1  CTGGTCCTTTTCAGAGAATGTACTTGGAGGAAATGCCATAGCAGGCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTTTCAGAGAATGTACTTGGAGGAAATGCCATAGCAGGCCCTC  621

seq1  TGAAGACACCCATCTTTTATCAGGTTCAAATTAAAGATGTATCTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACCCATCTTTTATCAGGTTCAAATTAAAGATGTATCTTTTTAT  671

seq1  TAATACCCTGATGGTGTGTAATTGTTAGTATTAAATAATAAGTAGTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCCTGATGGTGTGTAATTGTTAGTATTAAATAATAAGTAGTGATA  721

seq1  TATATTTAACTTACTTAATCTAGATCAAGTTAAACCAATGATCATCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAACTTACTTAATCTAGATCAAGTTAAACCAATGATCATCTGAG  771

seq1  GACAGTGACAGGTGTGTGTGTGGGGGGGGGGGTTCCAGGAGGATGCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGACAGGTGTGTGTGTGGGGGGGGGGGTTCCAGGAGGATGCAACC  821

seq1  TGGGCAAATTACTCTCTATCTCACATCAGACAGAGAAGCCAAATGATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAATTACTCTCTATCTCACATCAGACAGAGAAGCCAAATGATTAG  871

seq1  ACCATTAACAGACATTAATATATTCAAGTCAATTAATCTGTAGCCATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACAGACATTAATATATTCAAGTCAATTAATCTGTAGCCATTGA  921

seq1  GTGACCAGAAGTTGTCTATACTTTCTAGCTACTCACTGTGGTTTGCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGAAGTTGTCTATACTTTCTAGCTACTCACTGTGGTTTGCTATA  971

seq1  GTTACGCATCATGCATTTCAAGTCCAGCCTTTTAACTTTTAAAGTTCAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGCATCATGCATTTCAAGTCCAGCCTTTTAACTTTTAAAGTTCAAT  1021

seq1  GGAATTC  1057
      |||||||
seq2  GGAATTC  1028