BAC Information

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BAC

Clone NameB6Ng01-047G05
Chromosome1 (Build37)
Map Location 93,779,205 - 93,921,556
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047G05.bB6Ng01-047G05.g
ACCDH872264DH872265
length1,108838
definitionDH872264|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G05, 5' end.DH872265|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,920,429 - 93,921,556)(93,779,205 - 93,779,901)
sequence
gaattcattctttttaatagctgagtagtactccattgtgtaaatgtacc
acattttttgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattacaaataaggctgctatgaacatagtggagcatgtgtc
cttcttaccggttgggacatcttctgaatatatgcccaggagaggtattg
cgggatcctccggtagtactatgtccaattttcggaggaaccgccagact
gatttccagagtggttgtacaagcttgcaatcccaccaacaatggaggag
tgttcctctttctcctttttcctttttctttaaaaacaaacaaacaaaca
aacaaaacaatgctaaaggcttgcccacagcccagtctcatggaggcatt
tcccagttggggtttccacctctcagatgcctcctaatgtgtataaagtt
gatagaatattagctagcacattgcttagcacctccatgattgccagtgt
agtcagccttctctgtatgccttgtggctgcctgcatttcttctatgatt
tgctgtgctgttttcacctgcagtgctggtcgtttctcataggtgtagga
gtgctctttatgaataaggacattattccagcctccaccattcattctca
cttgatacagagtagtcacctacttttcctgtcgtgaatcagatgttctt
tctgaacacataaaaaatgccacctctgttccctctcatgtgtctgtgtt
ccatttacatgtctgtggctgtatctagcttgctcccttgctacatcctt
atactgggcaccatgcagcctcgatggtgcccacatagatgttaggctga
ctgcccatctccccacaccgtgtccctctgccaagagtttcctgggcttg
tctgggcctgtttctcttccttgatgaactttacaaccattctcatgaag
tcccccacagttatgccaaaaattacttcagattgtgggtaatggcttcc
tagtaatggaattgtactgagaaacagttatgtatatattctaccctatt
atccttgtttattttcattatgcattaatgtttaatctggaaaaaaatct
tttgtctt
gaattcctgtcctctcttcccataggccaggacttgcccttcctaaatct
cccttctcattggctgaagacacaaactttatctaatgggtaacttgggc
tgtgggctcagtcctgcagactgtctgcaactttccagttctcggggttt
gggataagtgggtgcacgctgtcagctcagggagacagagacttcagcca
tccttccttctaggctcctgaaaggcaccatgcacaactgatatctgtgg
tcaccctgtggagaggcaacacagaagatctaccaggcctccatgcttgg
cttaactgtagcttagcttctgctagtcccggtatccctacctgcctcct
agtctcccagcctttgcccatcactgggagatcagcctggttagatccca
cacatgagagcacaaagtgttggcctttttgtgtctgccttatttctcta
aaaacaaaatctatctctactgccttctgcaacatagtagaagcttccac
gtgctcaggaaggctgaatggtgttccctagccagtgagtaccatgcttc
ctttattcaatagtcatttgatagacacaggcagccctgtgttcacccca
tttgagaactgtgccaggtgaacaccagtgtgcacacgtctcggggacac
actgattttgctttgttttctttggctgtacgcccagctgtgggactgct
gatcttgctgtagcttcacatgtttgtttttctgaggaagcgacattcca
ttcttcatagtggactaaagtatttaccctcagcacagtgtgcagggctt
ccccttccctccatgtcttccaccagcactggcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93920429_93921556
seq2: B6Ng01-047G05.b_47_1154 (reverse)

seq1  AAGACAAAAAGATATTATGTCCCAGATTAAACATTTATATGCATTAATTG  50
      ||||||||   | ||| | | ||||||||||||||   ||||||  | ||
seq2  AAGACAAA---AGATTTTTTTCCAGATTAAACATT--AATGCAT--AATG  43

seq1  AAAAATAAAAACAAGGATTTACTAGGGTAGAA-ATATAAATAAACAAATA  99
      |||   | |||||||||  || |||||||||| ||||| ||||       
seq2  AAA---ATAAACAAGGA--TAATAGGGTAGAATATATACATAA-------  81

seq1  ACTTGTTTCTCAAGTACAAATTCAATACTAGGAAGCCATTACCCCACAAT  149
         |||||||| ||||||| | || |||||||||||||||| ||||||||
seq2  --CTGTTTCTC-AGTACAATTCCATTACTAGGAAGCCATTA-CCCACAAT  127

seq1  CTGAAGTAATTTTTGGCATAACTGT-GGGGACTTCATGAGAATGGTTGTA  198
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAGTAATTTTTGGCATAACTGTGGGGGACTTCATGAGAATGGTTGTA  177

seq1  AAGTTCATCAAGGAGAAGAAACAGG-CCAGACAAGCCCAGGAAACTCTTG  247
      ||||||||||||||  ||||||||| ||||||||||||||||||||||||
seq2  AAGTTCATCAAGGAAGAGAAACAGGCCCAGACAAGCCCAGGAAACTCTTG  227

seq1  GCAGAGGGACACGGTGTGGGGAGATGGGCAGTCAGCCTAACATCTATGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGACACGGTGTGGGGAGATGGGCAGTCAGCCTAACATCTATGTG  277

seq1  GGCACCATCGAGGCTGCATGGTGCCCAGTATAAGGATGTAGCAAGGGAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCGAGGCTGCATGGTGCCCAGTATAAGGATGTAGCAAGGGAGC  327

seq1  AAGCTAGATACAGCCACAGACATGTAAATGGAACACAGACACATGAGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATACAGCCACAGACATGTAAATGGAACACAGACACATGAGAGG  377

seq1  GAACAGAGGTGGCATTTTTTATGTGTTCAGAAAGAACATCTGATTCACGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGTGGCATTTTTTATGTGTTCAGAAAGAACATCTGATTCACGA  427

seq1  CAGGAAAAGTAGGTGACTACTCTGTATCAAGTGAGAATGAATGGTGGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGTAGGTGACTACTCTGTATCAAGTGAGAATGAATGGTGGAGG  477

seq1  CTGGAATAATGTCCTTATTCATAAAGAGCACTCCTACACCTATGAGAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAATGTCCTTATTCATAAAGAGCACTCCTACACCTATGAGAAAC  527

seq1  GACCAGCACTGCAGGTGAAAACAGCACAGCAAATCATAGAAGAAATGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCACTGCAGGTGAAAACAGCACAGCAAATCATAGAAGAAATGCAG  577

seq1  GCAGCCACAAGGCATACAGAGAAGGCTGACTACACTGGCAATCATGGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACAAGGCATACAGAGAAGGCTGACTACACTGGCAATCATGGAGG  627

seq1  TGCTAAGCAATGTGCTAGCTAATATTCTATCAACTTTATACACATTAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCAATGTGCTAGCTAATATTCTATCAACTTTATACACATTAGGA  677

seq1  GGCATCTGAGAGGTGGAAACCCCAACTGGGAAATGCCTCCATGAGACTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGAGAGGTGGAAACCCCAACTGGGAAATGCCTCCATGAGACTGG  727

seq1  GCTGTGGGCAAGCCTTTAGCATTGTTTTGTTTGTTTGTTTGTTTGTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGCAAGCCTTTAGCATTGTTTTGTTTGTTTGTTTGTTTGTTTTT  777

seq1  AAAGAAAAAGGAAAAAGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGGAAAAAGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG  827

seq1  ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCCGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCCGA  877

seq1  AAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCAT  927

seq1  ATATTCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGT  977

seq1  TCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAAGAACCCAGATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAAGAACCCAGATGT  1027

seq1  CCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGA  1077

seq1  GTACTACTCAGCTATTAAAAAGAATGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  GTACTACTCAGCTATTAAAAAGAATGAATTC  1108

seq1: chr1_93779205_93779901
seq2: B6Ng01-047G05.g_71_767

seq1  GAATTCCTGTCCTCTCTTCCCATAGGCCAGGACTTGCCCTTCCTAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTCTCTTCCCATAGGCCAGGACTTGCCCTTCCTAAATCT  50

seq1  CCCTTCTCATTGGCTGAAGACACAAACTTTATCTAATGGGTAACTTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCATTGGCTGAAGACACAAACTTTATCTAATGGGTAACTTGGGC  100

seq1  TGTGGGCTCAGTCCTGCAGACTGTCTGCAACTTTCCAGTTCTCGGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTCAGTCCTGCAGACTGTCTGCAACTTTCCAGTTCTCGGGGTTT  150

seq1  GGGATAAGTGGGTGCACGCTGTCAGCTCAGGGAGACAGAGACTTCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGTGGGTGCACGCTGTCAGCTCAGGGAGACAGAGACTTCAGCCA  200

seq1  TCCTTCCTTCTAGGCTCCTGAAAGGCACCATGCACAACTGATATCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCTAGGCTCCTGAAAGGCACCATGCACAACTGATATCTGTGG  250

seq1  TCACCCTGTGGAGAGGCAACACAGAAGATCTACCAGGCCTCCATGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGTGGAGAGGCAACACAGAAGATCTACCAGGCCTCCATGCTTGG  300

seq1  CTTAACTGTAGCTTAGCTTCTGCTAGTCCCGGTATCCCTACCTGCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGTAGCTTAGCTTCTGCTAGTCCCGGTATCCCTACCTGCCTCCT  350

seq1  AGTCTCCCAGCCTTTGCCCATCACTGGGAGATCAGCCTGGTTAGATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGCCTTTGCCCATCACTGGGAGATCAGCCTGGTTAGATCCCA  400

seq1  CACATGAGAGCACAAAGTGTTGGCCTTTTTGTGTCTGCCTTATTTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGAGCACAAAGTGTTGGCCTTTTTGTGTCTGCCTTATTTCTCTA  450

seq1  AAAACAAAATCTATCTCTACTGCCTTCTGCAACATAGTAGAAGCTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTATCTCTACTGCCTTCTGCAACATAGTAGAAGCTTCCAC  500

seq1  GTGCTCAGGAAGGCTGAATGGTGTTCCCTAGCCAGTGAGTACCATGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGGAAGGCTGAATGGTGTTCCCTAGCCAGTGAGTACCATGCTTC  550

seq1  CTTTATTCAATAGTCATTTGATAGACACAGGCAGCCCTGTGTTCACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAATAGTCATTTGATAGACACAGGCAGCCCTGTGTTCACCCCA  600

seq1  TTTGAGAACTGTGCCAGGTGAACACCAGTGTGCACACGTCTCGGGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACTGTGCCAGGTGAACACCAGTGTGCACACGTCTCGGGGACAC  650

seq1  ACTGATTTTGCTTTGTTTTCTTTGGCTGTACGCCCAGCTGTGGGACT  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTGCTTTGTTTTCTTTGGCTGTACGCCCAGCTGTGGGACT  697