BAC Information

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BAC

Clone NameB6Ng01-047G13
Chromosome1 (Build37)
Map Location 110,982,401 - 111,146,534
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047G13.bB6Ng01-047G13.g
ACCDH872278DH872279
length1,023800
definitionDH872278|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G13, 5' end.DH872279|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,145,455 - 111,146,534)(110,982,401 - 110,983,383)
sequence
gaattcctttttaagcattcattattctcatgagagacagagactgagac
agagatagagaaacagacacagatacaaacagagggacagcaacagagag
aaagatagagaaacaaacagacagaacaccttgtcttctaaaattatgtg
gaggtcagaggttaactgcttttgaatgtcagtttcacttcctagcatga
aatacagacattaaagaactaaggttattaggtttccatggcaagtgtct
ttctcactgagccatattctccatactacagttaatttttatcttgtttg
ttataaatgatgaacatagtccttctaatgtgtaatactggtctatcagc
agtataagaaaaacggaacataatgtcaacaggaaaatatgtgcatttga
gaaattgttttagggaaagtgagtgttaatacgatgatatagagaaaagg
aagacaaaccatgttttaaaagatgaatgaaatggctaaagagaatgatc
agaggtaaagaatacctactctttttactgaagtcctaagttggttaacc
agcacccacaacaggatgctcacaactgcctacaattccaagtcaaagac
ttataatacctttatcttttatggtcacctgcacaaatgcacagatccag
acagacaaatacacacaaaaaataaattttcaaaggagaataaaatttaa
atatatataaaatatatgttaacttatatagtaccctttaagcttgaata
aacatgacagtaatgggacaaataagtcagctacaaatttgttaaatatt
tcaatttttcgttatagaaaaaacaggagtagagccttcgaaacaacaaa
taaaacaaacaaacaacgacacacaaaacccaagatctctggggaatcac
atacaacatctacaagtttatactcacagtgaagtgttgcagagtctgat
agtcagtgatgatgttagctcaactactgaccagagatcatcagatgagt
aagtgcaggaatctgagcacctc
gaattcaatgtactaatctacagttactggaagaaattgcataaataata
aaatttaaacacagctacctttgttgttaagtgaattttgatatttatga
gaagtctaaaaagcttagaaaggtgtgtgaattcagttgaaatttcagca
agactaataatgtctaaaacaaagaaatggcagaagaaacacttaaagat
ttctaaatttgactacaatcgtaagaatttgaatatgtattagtaggtag
gattatatatgggttgtcttatatttgtgatttttgaagttgctagcctc
tatcactgttcccttcttcacttccagtcagatcttatttttgtatttac
attaatctgaagaaaataaccaatgtgttaaagtcttatgaaggcatagt
atttgaagtggatcagagcaaggcttggttatcacaaagactgtctgata
tttgggggtgttgtgcaaaacagttggcgaatccaggcaatgtaacattc
atttggcaaataattgctttctttagtagagacagctgctctcctgccct
tctggctaaaacacaccgaggaaaggaaaaaacatccttgcaaatgaaaa
taatggcgaaatgttggcaatacagtggagatcaaacaaaataaagcttt
aaaaccaagagaaacaattttgtaggatagtgtttaagaaattaggcttg
cctctctgtctctctgtctctctgactctgtctctctgtctctctgtctc
tgatctgactctgtctctctctctctctctctctctctctctctcagtac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111145455_111146534
seq2: B6Ng01-047G13.b_47_1069 (reverse)

seq1  GAGGTGGCTCAGATTCCCTTGCACTTTTACTCATCTTGATTGGATCTTTC  50
      ||||| |||||||||||  |||||  ||||||||| ||||  ||    ||
seq2  GAGGT-GCTCAGATTCC--TGCAC--TTACTCATC-TGAT--GA----TC  38

seq1  TGTGTTCAGTTAGTTTGAGCCTAAACCAATCTATCACTGACTATCAGACT  100
      | || |||| ||| ||||| ||||    ||| ||||||||||||||||| 
seq2  TCTGGTCAG-TAG-TTGAG-CTAA---CATC-ATCACTGACTATCAGAC-  80

seq1  TCTGCAAACAACTTTCAACTTTGTGGAAGTATAAAACTTTTGTTAGATTG  150
      |||||||   ||||    |  ||||  ||||| ||||||    |||||  
seq2  TCTGCAA--CACTT----CACTGTG--AGTAT-AAACTT---GTAGAT--  116

seq1  TTTGTATGGTGATTTCTCCCAGAGAATCTTTGGGTTTTTTGTTTGTTTGT  200
       |||||| ||||||   ||||||| ||| ||||||||| ||| |  ||||
seq2  GTTGTAT-GTGATT--CCCCAGAG-ATC-TTGGGTTTTGTGTGTCGTTGT  161

seq1  CTGTTTGTTTTGTTTTGTTTTTTATTTTTGTTTGTTTTCTGAAGGCTCTA  250
       |||||||||| |||                ||||||   ||||||||||
seq2  TTGTTTGTTTTATTT---------------GTTGTTT--CGAAGGCTCTA  194

seq1  CTCTTGTTTTTTCTATAACGAAAAATTGAAATATTTAACAAAATTTGTAG  300
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCCTGTTTTTTCTATAACGAAAAATTGAAATATTTAAC-AAATTTGTAG  243

seq1  CTGACTTATTTGTCCCATTACTGTCATGTTTATTCAAGCTTAAAGGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTATTTGTCCCATTACTGTCATGTTTATTCAAGCTTAAAGGGTAC  293

seq1  TATATAAGTTAACATATATTTTATATATATTTAAATTTTATTCTCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTTAACATATATTTTATATATATTTAAATTTTATTCTCCTTTG  343

seq1  AAAATTTATTTTTTGTGTGTATTTGTCTGTCTGGATCTGTGCATTTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTTTTTGTGTGTATTTGTCTGTCTGGATCTGTGCATTTGTGC  393

seq1  AGGTGACCATAAAAGATAAAGGTATTATAAGTCTTTGACTTGGAATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACCATAAAAGATAAAGGTATTATAAGTCTTTGACTTGGAATTGTA  443

seq1  GGCAGTTGTGAGCATCCTGTTGTGGGTGCTGGTTAACCAACTTAGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGTGAGCATCCTGTTGTGGGTGCTGGTTAACCAACTTAGGACTT  493

seq1  CAGTAAAAAGAGTAGGTATTCTTTACCTCTGATCATTCTCTTTAGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAAGAGTAGGTATTCTTTACCTCTGATCATTCTCTTTAGCCATT  543

seq1  TCATTCATCTTTTAAAACATGGTTTGTCTTCCTTTTCTCTATATCATCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCTTTTAAAACATGGTTTGTCTTCCTTTTCTCTATATCATCGT  593

seq1  ATTAACACTCACTTTCCCTAAAACAATTTCTCAAATGCACATATTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTCACTTTCCCTAAAACAATTTCTCAAATGCACATATTTTCCT  643

seq1  GTTGACATTATGTTCCGTTTTTCTTATACTGCTGATAGACCAGTATTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTATGTTCCGTTTTTCTTATACTGCTGATAGACCAGTATTACA  693

seq1  CATTAGAAGGACTATGTTCATCATTTATAACAAACAAGATAAAAATTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAGGACTATGTTCATCATTTATAACAAACAAGATAAAAATTAAC  743

seq1  TGTAGTATGGAGAATATGGCTCAGTGAGAAAGACACTTGCCATGGAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATGGAGAATATGGCTCAGTGAGAAAGACACTTGCCATGGAAACC  793

seq1  TAATAACCTTAGTTCTTTAATGTCTGTATTTCATGCTAGGAAGTGAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACCTTAGTTCTTTAATGTCTGTATTTCATGCTAGGAAGTGAAACT  843

seq1  GACATTCAAAAGCAGTTAACCTCTGACCTCCACATAATTTTAGAAGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAAAAGCAGTTAACCTCTGACCTCCACATAATTTTAGAAGACAA  893

seq1  GGTGTTCTGTCTGTTTGTTTCTCTATCTTTCTCTCTGTTGCTGTCCCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTGTCTGTTTGTTTCTCTATCTTTCTCTCTGTTGCTGTCCCTCT  943

seq1  GTTTGTATCTGTGTCTGTTTCTCTATCTCTGTCTCAGTCTCTGTCTCTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATCTGTGTCTGTTTCTCTATCTCTGTCTCAGTCTCTGTCTCTCA  993

seq1  TGAGAATAATGAATGCTTAAAAAGGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  TGAGAATAATGAATGCTTAAAAAGGAATTC  1023

seq1: chr1_110982401_110983383
seq2: B6Ng01-047G13.g_68_867

seq1  GAATTCAATGTACTAATCTACAGTTACTGGAAGAAATTGCATAAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTACTAATCTACAGTTACTGGAAGAAATTGCATAAATAATA  50

seq1  AAATTTAAACACAGCTACCTTTGTTGTTAAGTGAATTTTGATATTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAACACAGCTACCTTTGTTGTTAAGTGAATTTTGATATTTATGA  100

seq1  GAAGTCTAAAAAGCTTAGAAAGGTGTGTGAATTCAGTTGAAATTTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAAAAGCTTAGAAAGGTGTGTGAATTCAGTTGAAATTTCAGCA  150

seq1  AGACTAATAATGTCTAAAACAAAGAAATGGCAGAAGAAACACTTAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATAATGTCTAAAACAAAGAAATGGCAGAAGAAACACTTAAAGAT  200

seq1  TTCTAAATTTGACTACAATCGTAAGAATTTGAATATGTATTAGTAGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATTTGACTACAATCGTAAGAATTTGAATATGTATTAGTAGGTAG  250

seq1  GATTATATATGGGTTGTCTTATATTTGTGATTTTTGAAGTTGCTAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATATGGGTTGTCTTATATTTGTGATTTTTGAAGTTGCTAGCCTC  300

seq1  TATCACTGTTCCCTTCTTCACTTCCAGTCAGATCTTATTTTTGTATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGTTCCCTTCTTCACTTCCAGTCAGATCTTATTTTTGTATTTAC  350

seq1  ATTAATCTGAAGAAAATAACCAATGTGTTAAAGTCTTATGAAGGCATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTGAAGAAAATAACCAATGTGTTAAAGTCTTATGAAGGCATAGT  400

seq1  ATTTGAAGTGGATCAGAGCAAGGCTTGGTTATCACAAAGACTGTCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTGGATCAGAGCAAGGCTTGGTTATCACAAAGACTGTCTGATA  450

seq1  TTTGGGGGTGTTGTGCAAAACAGTTGGCGAATCCAGGCAATGTAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTGTTGTGCAAAACAGTTGGCGAATCCAGGCAATGTAACATTC  500

seq1  ATTTGGCAAATAATTGCTTTCTTTAGTAGAGACAGCTGCTCTCCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAAATAATTGCTTTCTTTAGTAGAGACAGCTGCTCTCCTGCCCT  550

seq1  TCTGGCTAAAACACACCGAGGAAAGGAAAAAACATCCTTGCAAATGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAAAACACACCGAGGAAAGGAAAAAACATCCTTGCAAATGAAAA  600

seq1  TAATGGCGAAATGTTGGCAATACAGTGGAGATCAAACAAAATAAGGCTTT  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAATGGCGAAATGTTGGCAATACAGTGGAGATCAAACAAAATAAAGCTTT  650

seq1  AAAACCAAGAGAAACAATTTTGTAGGATAGTGTTTAAGAAATTAGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGAGAAACAATTTTGTAGGATAGTGTTTAAGAAATTAGGCTTG  700

seq1  CCTCTCTGTCTCTCTGTCTCTCTGACTCTGTCTCTCTGTCTCTCTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTCTCTCTGTCTCTCTGACTCTGTCTCTCTGTCTCTCTGTCTC  750

seq1  TGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC---T  797
      ||  |||| |||||||||||||||||||||||||||||||||||||    
seq2  TG-ATCTGACTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTA  799

seq1  CTCTCTCTCTCTCTCTCTCTTTCTCTCAGTGAAATGTTAGTTTTTTCCTT  847
      |                                                 
seq2  C-------------------------------------------------  800

seq1  TCAAATGTACTTTCTAATCTTTAAACTCTTTAAAAAATTTTTAATATGAA  897
                                                        
seq2  --------------------------------------------------  800

seq1  GTATTTTTCAATAATTTATGGAAGGAAAACAGGTTCTTCTTTCACTTATT  947
                                                        
seq2  --------------------------------------------------  800

seq1  CAATTTTGGAGAGTCGTTCTCAAAGGTAGCAAGTAC  983
                                          
seq2  ------------------------------------  800