BAC Information

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BAC

Clone NameB6Ng01-047K06
Chromosome1 (Build37)
Map Location 160,433,383 - 160,434,519
singlet/doubletsinglet
Overlap geneAstn1
Upstream geneLztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K06.bB6Ng01-047K06.g
ACCDH872449DH872450
length1,2641,127
definitionDH872449|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K06, 5' end.DH872450|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactgggtatagagacagacaagtggaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatcttgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacatttggtgctgg
cacaattggttgttatcatgtagaagaatgcgaatcgatcctaacttact
tcttgtactaggtcaaatctaaggtggatccaggaacttcacattaaacc
agagaactggaacttatatggaggagaaatgtgggggaaaagccttgaag
atattgggcacaggggaaatttctggacagacagcatggctgtgctgtca
gatcgagagatgccaatggaactatgggaactctcgggtttctgcaggca
gacttgcttaggacaaagaacctcacagatctggtagagtctgttcgatc
ctatacagaagtga
gaattcaatcaaagcatcagatcttagatgttagctatatctatcgagag
agtggataggacaaccttggccctaacgtaacagaacaagatcagggtca
aaaacatgaagcaaaggaagatctgttcttttaagatagccaacctctct
ctctctctcaaactgctatgaataagtacaccttaaaagacagcatctca
agagtggtcctcaaggtactgcccagtcccttctttgaggaagacacagt
caatacagcatgctgctaaagatgcagagactttccatgaggctgcaaaa
ggtgaaatcacataattgggaaatggaaattctcgttagcatctagaaga
tgacctgtatcaataatcatttcctaatacaatctaatgtctgagaactt
taaaaatctgagagtagaaaggaagattctccagcatgcatcatattcca
catagcaccaaggccatggaatggacaaatggtactttgggggttcaatc
ccaaagctctttagggaacagacagattgcccaaatccatgcagtagtta
agagttcaatcagcagggaatactggagtctgtgatgaaagacaggccac
attttgtcagaatgcacatagattctatttctgctaaaacccagtgctgt
ccagaaggaaaaaccccacattttgtgtttagccaaaggctggctagtag
tgacattatcaatacggaattagctaaattggattttcaatggtaatcct
cttacttcgctcctcctgtaactttgtagcccctagacagcagaaaggaa
tgtcttcctttccaccagcctctttttctatgttcctcgtttcaataatt
gggacctatctactcagctcaagcagacttttctcacttccatcattttt
ttgcctttactctgttttgtttgtttttccctgactttccctataaggag
tgacaatgccaagctttccctgatgaacaagtataaagacaatatcatag
ctacaagcccgtggaatctaaaccacagcaagccactctgctctcctaca
actccagcagcagagaaagaagatacacaataagccggaggactcatgtc
tagtctacgtattcagaatgagttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160433383_160434519
seq2: B6Ng01-047K06.g_66_1192

seq1  GAATTCAATCAAAGCATCAGATCTTAGATGTTAGCTATATCTATCGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAAGCATCAGATCTTAGATGTTAGCTATATCTATCGAGAG  50

seq1  AGTGGATAGGACAACCTTGGCCCTAACGTAACAGAACAAGATCAGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATAGGACAACCTTGGCCCTAACGTAACAGAACAAGATCAGGGTCA  100

seq1  AAAACATGAAGCAAAGGAAGATCTGTTCTTTTAAGATAGCCAACCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGAAGCAAAGGAAGATCTGTTCTTTTAAGATAGCCAACCTCTCT  150

seq1  CTCTCTCTCAAACTGCTATGAATAAGTACACCTTAAAAGACAGCATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCAAACTGCTATGAATAAGTACACCTTAAAAGACAGCATCTCA  200

seq1  AGAGTGGTCCTCAAGGTACTGCCCAGTCCCTTCTTTGAGGAAGACACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTCCTCAAGGTACTGCCCAGTCCCTTCTTTGAGGAAGACACAGT  250

seq1  CAATACAGCATGCTGCTAAAGATGCAGAGACTTTCCATGAGGCTGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGCATGCTGCTAAAGATGCAGAGACTTTCCATGAGGCTGCAAAA  300

seq1  GGTGAAATCACATAATTGGGAAATGGAAATTCTCGTTAGCATCTAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATCACATAATTGGGAAATGGAAATTCTCGTTAGCATCTAGAAGA  350

seq1  TGACCTGTATCAATAATCATTTCCTAATACAATCTAATGTCTGAGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTATCAATAATCATTTCCTAATACAATCTAATGTCTGAGAACTT  400

seq1  TAAAAATCTGAGAGTAGAAAGGAAGATTCTCCAGCATGCATCATATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTGAGAGTAGAAAGGAAGATTCTCCAGCATGCATCATATTCCA  450

seq1  CATAGCACCAAGGCCATGGAATGGACAAATGGTACTTTGGGGGTTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACCAAGGCCATGGAATGGACAAATGGTACTTTGGGGGTTCAATC  500

seq1  CCAAAGCTCTTTAGGGAACAGACAGATTGCCCAAATCCATGCAGTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTCTTTAGGGAACAGACAGATTGCCCAAATCCATGCAGTAGTTA  550

seq1  AGAGTTCAATCAGCAGGGAATACTGGAGTCTGTGATGAAAGACAGGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAATCAGCAGGGAATACTGGAGTCTGTGATGAAAGACAGGCCAC  600

seq1  ATTTTGTCAGAATGCACATAGATTCTATTTCTGCTAAAACCCAGTGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCAGAATGCACATAGATTCTATTTCTGCTAAAACCCAGTGCTGT  650

seq1  CCAGAAGGAAAAACCCCACATTTTGTGTTTAGCCAAAGGCTGGCTAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGAAAAACCCCACATTTTGTGTTTAGCCAAAGGCTGGCTAGTAG  700

seq1  TGACATTATCAATACGGAATTAGCTAAATTGGATTTTCAATGGTAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTATCAATACGGAATTAGCTAAATTGGATTTTCAATGGTAATCCT  750

seq1  CTTACTTCGCTCCTCCTGTAACTTTGTAGCCCCTAGACAGCAGAAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCGCTCCTCCTGTAACTTTGTAGCCCCTAGACAGCAGAAAGGAA  800

seq1  TGTCTTCCTTTCCACCAGCCTCTTTTTCTATGTTCCTCGTTTCAATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTTTCCACCAGCCTCTTTTTCTATGTTCCTCGTTTCAATAATT  850

seq1  GGGACCTATCTACTCAGCTCAAGCAGAC-TTTCTCACTTCCATTCATTTT  899
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  GGGACCTATCTACTCAGCTCAAGCAGACTTTTCTCACTTCCA-TCATTTT  899

seq1  TTTGCCTTTACTCTTGTTTTGTTTTGTTTTTTCCTGACTTTTCCTTATAT  949
      ||||||||||||| ||||||| ||||||||| ||||||||| ||   |||
seq2  TTTGCCTTTACTC-TGTTTTG-TTTGTTTTTCCCTGACTTTCCC---TAT  944

seq1  AGGGAGTGACAATGCCAAGCTTTCCCTGATGAACAAGTATAAAGACAATA  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGACAATGCCAAGCTTTCCCTGATGAACAAGTATAAAGACAATA  994

seq1  TCATAGCCACAAGCCCCGTGGATTCTAACCACCAGCAAGCCACTCTGCTC  1049
      ||||||| ||||| |||||||| ||||| |  ||||||||||||||||||
seq2  TCATAGCTACAAG-CCCGTGGAATCTAAACCACAGCAAGCCACTCTGCTC  1043

seq1  TCCCACACCTCCAGCAGCCAGAGAAAGAGGATCAACAATAAAGCCAGAGG  1099
      ||| ||| ||||||||| |||||||||| |||  ||||| ||||| ||||
seq2  TCCTACAACTCCAGCAG-CAGAGAAAGAAGATACACAAT-AAGCCGGAGG  1091

seq1  TACTCATGTCTAGTTCTACGTTATTCAG-ATGAGTTCCA  1137
       |||||||||||| |||||| ||||||| ||||||||||
seq2  -ACTCATGTCTAG-TCTACG-TATTCAGAATGAGTTCCA  1127