BAC Information

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BAC

Clone NameB6Ng01-047K22
Chromosome1 (Build37)
Map Location 41,175,294 - 41,327,717
singlet/doubletdoublet
Overlap genenone
Upstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K22.bB6Ng01-047K22.g
ACCDH872479DH872480
length5801,026
definitionDH872479|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K22, 5' end.DH872480|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,327,132 - 41,327,717)(41,175,294 - 41,176,351)
sequence
tgtcttcagtgcagagctacctgccctgtcctctgtgttactggaattaa
caggatagtacagaggccccatgcgttccctgcaaaggacaagctttggc
caggacacctgccgctgtcatgactaggctggggcagtggttaccagttg
gagtaaggaaacagcattttcacatcgactgcctgcacttgaactgtgct
tttgtttcttgttaaatagatggcctgtcccctatcagtctcctgtcatt
caatctgcttagctctttcctctcccacagcactcaggtgggaactgttt
accttggtgtggtccatcacccaggcaaacgtggctagccgcctataggc
tcactgccaagcatcaggggacagttcaatgatggaggagccctctgccc
tgcaagactggcaggtccaaaatgctgtgtttgattctccttcactacct
ttagacagactgtttctgaacttcattctgtttgtgaacttgaacctggg
tagaaaattgggcagtggacctaggaggcagtgaatatgcacacatgtgt
ttatgtactagtggtgtgtgtgtgtgtgtg
gaattccaatagaatgttaatgcaactatcaagtgagagaccaaaaagac
ctttaggaatgtcaaaaatctgtaaaacaaacaaacaaacaaaaagaacc
ccactagagtaatcacaaattcttgtagcgttcaccagtaacaaacaacc
caatagttgcagtgttttgttttttgttttttgttttgttttttttttta
aaaatctggtgattatgtctaaggagtgtttcttgcatgctgcatgctac
agctgtcttatgtacttaaacaaaatggactgagtgttagaactaagcag
cggaggactcagaacttcctaaaacccactttaaaaaatctcacttggct
ccttatttcgtaacgaaagtaagatgatgtgctattggtcataacggcca
aacacaaaaagacaacagcggcttcctttaaaatgacactcacggtaggc
aaggcgacgcaagtaaatgtgcgtatttttttttcttttttctatctctg
aaaagttcttgccacgaaagtatcatccaatcacctaacgtgcgatttaa
aaggcttccatcattttcttttctcaaggacctctcgacttctaaaaatg
cgcaaacaaaccgatcttgagaagatactttgcctaacataaaagttaat
ctactttgtcaaattcacatcaaggaaaacacagaggactttatgagatt
tcattgccaaggacaagaagccggtgatgcgggtcagtggagtgaagcct
gcctgcctgagggtcagactcagtctctctccctggacgtagccgagcct
gaggcgctgcctctgggtacacatttgggtttccaagtgggcacatgttt
ctatgcacttcccatccatatatttatgatgaaataaacgacagactttc
agagatgaaagagcgtaaaaaatcatcaataatcttagacatcatgtatc
acatttagcatctgacatcatctaaagtatgtctttcagaatattccgtc
agctcaatgtctgagtcagggatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41327132_41327717
seq2: B6Ng01-047K22.b_49_634 (reverse)

seq1  CACACACACACACACACCACTAGTACATAAACACATGTGTGCATATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACCACTAGTACATAAACACATGTGTGCATATTCAC  50

seq1  TGCCTCCTAGGTCCACTGCCCAATTTTCTACCCAGGTTCAAGTTCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTAGGTCCACTGCCCAATTTTCTACCCAGGTTCAAGTTCACAAA  100

seq1  CAGAATGAAGTTCAGAAACAGTCTGTCTAAAGGTAGTGAAGGAGAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAGTTCAGAAACAGTCTGTCTAAAGGTAGTGAAGGAGAATCAA  150

seq1  ACACAGCATTTTGGACCTGCCAGTCTTGCAGGGCAGAGGGCTCCTCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATTTTGGACCTGCCAGTCTTGCAGGGCAGAGGGCTCCTCCATC  200

seq1  ATTGAACTGTCCCCTGATGCTTGGCAGTGAGCCTATAGGCGGCTAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTGTCCCCTGATGCTTGGCAGTGAGCCTATAGGCGGCTAGCCAC  250

seq1  GTTTGCCTGGGTGATGGACCACACCAAGGTAAACAGTTCCCACCTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGGGTGATGGACCACACCAAGGTAAACAGTTCCCACCTGAGTG  300

seq1  CTGTGGGAGAGGAAAGAGCTAAGCAGATTGAATGACAGGAGACTGATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGAGGAAAGAGCTAAGCAGATTGAATGACAGGAGACTGATAGG  350

seq1  GGACAGGCCATCTATTTAACAAGAAACAAAAGCACAGTTCAAGTGCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCCATCTATTTAACAAGAAACAAAAGCACAGTTCAAGTGCAGGC  400

seq1  AGTCGATGTGAAAATGCTGTTTCCTTACTCCAACTGGTAACCACTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATGTGAAAATGCTGTTTCCTTACTCCAACTGGTAACCACTGCCCC  450

seq1  AGCCTAGTCATGACAGCGGCAGGTGTCCTGGCCAAAGCTTGTCCTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGTCATGACAGCGGCAGGTGTCCTGGCCAAAGCTTGTCCTTTGCA  500

seq1  GGGAACGCATGGGGCCTCTGTACTATCCTGTTAATTCCAGTAACACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGCATGGGGCCTCTGTACTATCCTGTTAATTCCAGTAACACAGAG  550

seq1  GACAGGGCAGGTAGCTCTGCACTGAAGACAGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCAGGTAGCTCTGCACTGAAGACAGAATTC  586

seq1: chr1_41175294_41176351
seq2: B6Ng01-047K22.g_68_1093

seq1  GAATTCCAATAGAATGTTAATGCAACTATCAAGTGAGAGACCAAAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAGAATGTTAATGCAACTATCAAGTGAGAGACCAAAAAGAC  50

seq1  CTTTAGGAATGTCAAAAATCTGTAAAACAAACAAACAAACAAAAAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAATGTCAAAAATCTGTAAAACAAACAAACAAACAAAAAGAACC  100

seq1  CCACTAGAGTAATCACAAATTCTTGTAGCGTTCACCAGTAACAAACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAGTAATCACAAATTCTTGTAGCGTTCACCAGTAACAAACAACC  150

seq1  CAATAGTTGCAGTGTTTTGTTTTTTGTTTTTTGTTTTGTTTTTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTGCAGTGTTTTGTTTTTTGTTTTTTGTTTTGTTTTTTTTTTTA  200

seq1  AAAATCTGGTGATTATGTCTAAGGAGTGTTTCTTGCATGCTGCATGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGTGATTATGTCTAAGGAGTGTTTCTTGCATGCTGCATGCTAC  250

seq1  AGCTGTCTTATGTACTTAAACAAAATGGACTGAGTGTTAGAACTAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTATGTACTTAAACAAAATGGACTGAGTGTTAGAACTAAGCAG  300

seq1  CGGAGGACTCAGAACTTCCTAAAACCCACTTTAAAAAATCTCACTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGACTCAGAACTTCCTAAAACCCACTTTAAAAAATCTCACTTGGCT  350

seq1  CCTTATTTCGTAACGAAAGTAAGATGATGTGCTATTGGTCATAACGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCGTAACGAAAGTAAGATGATGTGCTATTGGTCATAACGGCCA  400

seq1  AACACAAAAAGACAACAGCGGCTTCCTTTAAAATGACACTCACGGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAAAGACAACAGCGGCTTCCTTTAAAATGACACTCACGGTAGGC  450

seq1  AAGGCGACGCAAGTAAATGTGCGTATTTTTTTTTCTTTTTTCTATCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGACGCAAGTAAATGTGCGTATTTTTTTTTCTTTTTTCTATCTCTG  500

seq1  AAAAGTTCTTGCCACGAAAGTATCATCCAATCACCTAACGTGCGATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTTGCCACGAAAGTATCATCCAATCACCTAACGTGCGATTTAA  550

seq1  AAGGCTTCCATCATTTTCTTTTCTCAAGGACCTCTCGACTTCTAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCCATCATTTTCTTTTCTCAAGGACCTCTCGACTTCTAAAAATG  600

seq1  CGCAAACAAACCGATCTTGAGAAGATACTTTGCCTAACATAAAAGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAACAAACCGATCTTGAGAAGATACTTTGCCTAACATAAAAGTTAAT  650

seq1  CTACTTTGTCAAATTCACATCAAGGAAAACACAGAGGACTTTATGAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGTCAAATTCACATCAAGGAAAACACAGAGGACTTTATGAGATT  700

seq1  TCATTGCCAAGGACAAGAAGCCGGTGATGCGGGTCAGTGGAGTGAAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCAAGGACAAGAAGCCGGTGATGCGGGTCAGTGGAGTGAAGCCT  750

seq1  GCCTGCCTGAGGGTCAGACTCAGTCTCTCTCCCTGGACGTAGCCGAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGAGGGTCAGACTCAGTCTCTCTCCCTGGACGTAGCCGAGCCT  800

seq1  GAGGCGCTGCCTCTGGGTACACATTTGGTTTTCCAAGTGGGCACATGTTT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGCGCTGCCTCTGGGTACACATTTGGGTTTCCAAGTGGGCACATGTTT  850

seq1  CTATGCACTTCCCATCCATTATATTTATGAATGAAATAAAACGACAGACT  900
      |||||||||||||||||| |||||||||| ||||||| ||||||||||||
seq2  CTATGCACTTCCCATCCA-TATATTTATG-ATGAAAT-AAACGACAGACT  897

seq1  TTCAGGAGATGAAAGGAAGCGTTAAAAAAAATCAATCCAATAAATCTTAG  950
      |||| ||||||||||  ||||| |||||  ||||||      ||||||| 
seq2  TTCA-GAGATGAAAG--AGCGTAAAAAATCATCAAT------AATCTTA-  937

seq1  GACATTCAATGTTATCACATTTTAAGCATTCTTGACATCAATTCTAAAAG  1000
      |||||   ||| ||||||||||  |||||   ||||||||  ||| ||||
seq2  GACAT--CATG-TATCACATTT--AGCAT--CTGACATCA--TCT-AAAG  977

seq1  TATGTCTTTTCAGAATATTCCCCGTTCAGCTTCACATGTCTGAAGTCAAG  1050
      |||||| ||||||||||||||    ||||| ||| ||||||| |||||  
seq2  TATGTC-TTTCAGAATATTCC---GTCAGC-TCA-ATGTCTG-AGTCA--  1018

seq1  GGGATGCT  1058
      ||||||||
seq2  GGGATGCT  1026