BAC Information

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BAC

Clone NameB6Ng01-047O01
Chromosome1 (Build37)
Map Location 58,638,782 - 58,770,152
singlet/doubletdoublet
Overlap geneBC049806, Ndufb3, EG667397, Als2cr12, Cflar
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l
Downstream geneLOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047O01.bB6Ng01-047O01.g
ACCDH872613DH872614
length4461,076
definitionDH872613|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O01, 5' end.DH872614|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,769,701 - 58,770,152)(58,638,782 - 58,639,864)
sequence
cacaatcctaacaagagggcggaggaaagttacaggaagccagagaggaa
gccaacttccgcctctaggggcgaaactgaccagtcaaggctcaaaaaaa
aaaaaaaaaaaaaaaaaaagaaagaaaaccccaaagaccgcacatacccc
aaatcccgccccccatgctacttctctgaaggaaggaaacaccccacttc
ccacccacccaccccccacccgggtttctcgcagcttgggaaactaggtt
agcaagtggtgacttgctaaagaattaaatgtcatcaaaaacaatgtaca
acataaaacttctggaaaaatccattgaagctgagtgtggtggtgtacgc
ccagctttgggggcgggcgggggtggggtcggctgctgagagaagatttt
agcggtcaaatcgcttgcttacccaaagcctccacctccgcgcccc
gaattcataagccagccagagccacacagtgatacatatcaaaaaaaaaa
aaaaaaaaaaaaaaaaggaaaagggaaaaaagaagagagagagagaaata
aaaaagtcagccactcatgtgatggacaatggcatatattttttgatggt
tacagttactctacagcaaaatgactacctggtgacccatctttaccatt
ctatatcagtgccttttaccacaatatataactattattttggcagctaa
tcctcaaacctaaacattacagctttataaataattaaatcataccattt
aaaatattacacatttggatttatactcattcctatttagtttttctaat
atgtgtctcaaaacagccaaatctctaaacattaggcttaaagtacttaa
gtttctaaacttgacctaggtcaaggtcaaaagatttgcaattctaagtt
tactacatatcattgagtgaatacctatatatcaatgttttattgaaaat
tatttaatcaagacagcgtttctctgtatagccctagctgtcctagaatt
cagaaagatcagcctgcttctgcctcccaagtgctgggattaaatgtgtg
tgccaccaccagccagctaaacttgaaattcttatttctaaattttcatt
taactctaagacaatatagctttctgacacatgagaaaaataagatgaat
aaataaatatcttttaattaattagtataggactaatttgtaaaaagaaa
ttgcttgacttatggaaagtggttaactgccaagaagaaactaattcaaa
ccaaaacattcagcacatttttatttttggcaacttcaacttctggctag
aaaactactctagctatgacattaaatacaaacagtttattgagctataa
aatcctggtagatttggcagctgtcactcagctaaagctgctgttactgc
tccccccctcagtgacagagctgagtagatcaaggtctagtgagtcagat
gtagcagtcatcaggtcctccctccaacgcccctacctcctcacatccac
ctttagaataagccagtccgattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58769701_58770152
seq2: B6Ng01-047O01.b_47_498 (reverse)

seq1  GGGGCGCGGAGGTGGAGGCTTTGGGTAAGCAAGCGATTTGACCGCTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGCGGAGGTGGAGGCTTTGGGTAAGCAAGCGATTTGACCGCTAAAA  50

seq1  TCTTCTCTCAGCAGCCGACCCCACCCCCGCCCGCCCCCAAAGCTGGGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCAGCAGCCGACCCCACCCCCGCCCGCCCCCAAAGCTGGGCGT  100

seq1  ACACCACCACACTCAGCTTCAATGGATTTTTCCAGAAGTTTTATGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCACACTCAGCTTCAATGGATTTTTCCAGAAGTTTTATGTTGTA  150

seq1  CATTGTTTTTGATGACATTTAATTCTTTAGCAAGTCACCACTTGCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTTGATGACATTTAATTCTTTAGCAAGTCACCACTTGCTAACC  200

seq1  TAGTTTCCCAAGCTGCGAGAAACCCGGGTGGGGGGTGGGTGGGTGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCCAAGCTGCGAGAAACCCGGGTGGGGGGTGGGTGGGTGGGAAG  250

seq1  TGGGGTGTTTCCTTCCTTCAGAGAAGTAGCATGGGGGGCGGGATTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTTTCCTTCCTTCAGAGAAGTAGCATGGGGGGCGGGATTTGGGG  300

seq1  TATGTGCGGTCTTTGGGGTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCGGTCTTTGGGGTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTT  350

seq1  TTTGAGCCTTGACTGGTCAGTTTCGCCCCTAGAGGCGGAAGTTGGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCTTGACTGGTCAGTTTCGCCCCTAGAGGCGGAAGTTGGCTTCC  400

seq1  TCTCTGGCTTCCTGTAACTTTCCTCCGCCCTCTTGTTAGGATTGTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCTTCCTGTAACTTTCCTCCGCCCTCTTGTTAGGATTGTGGAAT  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr1_58638782_58639864
seq2: B6Ng01-047O01.g_67_1142

seq1  GAATTCATAAGCCAGCCAGAGCCACACAGTGATACATATCAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGCCAGCCAGAGCCACACAGTGATACATATCAAAAAAAAAA  50

seq1  AAAAAAAAAAAAAAAAGGAAAAGGGAAAAAAGAAGAGAGAGAGAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGGAAAAGGGAAAAAAGAAGAGAGAGAGAGAAATA  100

seq1  AAAAAGTCAGCCACTCATGTGATGGACAATGGCATATATTTTTTGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCAGCCACTCATGTGATGGACAATGGCATATATTTTTTGATGGT  150

seq1  TACAGTTACTCTACAGCAAAATGACTACCTGGTGACCCATCTTTACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTACTCTACAGCAAAATGACTACCTGGTGACCCATCTTTACCATT  200

seq1  CTATATCAGTGCCTTTTACCACAATATATAACTATTATTTTGGCAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGTGCCTTTTACCACAATATATAACTATTATTTTGGCAGCTAA  250

seq1  TCCTCAAACCTAAACATTACAGCTTTATAAATAATTAAATCATACCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAACCTAAACATTACAGCTTTATAAATAATTAAATCATACCATTT  300

seq1  AAAATATTACACATTTGGATTTATACTCATTCCTATTTAGTTTTTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTACACATTTGGATTTATACTCATTCCTATTTAGTTTTTCTAAT  350

seq1  ATGTGTCTCAAAACAGCCAAATCTCTAAACATTAGGCTTAAAGTACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTCAAAACAGCCAAATCTCTAAACATTAGGCTTAAAGTACTTAA  400

seq1  GTTTCTAAACTTGACCTAGGTCAAGGTCAAAAGATTTGCAATTCTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAACTTGACCTAGGTCAAGGTCAAAAGATTTGCAATTCTAAGTT  450

seq1  TACTACATATCATTGAGTGAATACCTATATATCAATGTTTTATTGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATATCATTGAGTGAATACCTATATATCAATGTTTTATTGAAAAT  500

seq1  TATTTAATCAAGACAGCGTTTCTCTGTATAGCCCTAGCTGTCCTAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCAAGACAGCGTTTCTCTGTATAGCCCTAGCTGTCCTAGAATT  550

seq1  CAGAAAGATCAGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATCAGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAATGTGTG  600

seq1  TGCCACCACCAGCCAGCTAAACTTGAAATTCTTATTTCTAAATTTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACCAGCCAGCTAAACTTGAAATTCTTATTTCTAAATTTTCATT  650

seq1  TAACTCTAAGACAATATAGCTTTCTGACACATGAGAAAAATAAGATGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAAGACAATATAGCTTTCTGACACATGAGAAAAATAAGATGAAT  700

seq1  AAATAAATATCTTTTAATTAATTAGTATAGGACTAATTTGTAAAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATCTTTTAATTAATTAGTATAGGACTAATTTGTAAAAAGAAA  750

seq1  TTGCTTGACTTATGGAAAGTGGTTAACTGCCAAGAAGAAACTAATTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGACTTATGGAAAGTGGTTAACTGCCAAGAAGAAACTAATTCAAA  800

seq1  CCAAAACATTCAGCACATTTTTATTTTTGGCAACTTCAACTTCTGGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATTCAGCACATTTTTATTTTTGGCAACTTCAACTTCTGGCTAG  850

seq1  AAAACTACTCTAGCTATGACATTAAATACAAACAGTTTATTGAGCTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACTCTAGCTATGACATTAAATACAAACAGTTTATTGAGCTATAA  900

seq1  AATCCTGGTAGATTTGGCAGCTGGTTCACTCAGCTAAAGCTGCTGTTACT  950
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  AATCCTGGTAGATTTGGCAGCTG--TCACTCAGCTAAAGCTGCTGTTACT  948

seq1  GGCTCACACCCTCAAGTGACAGGAGCTGAGTTAGATCAAAGGTTCTAAAG  1000
       |||| | ||||| ||||||| |||||||| ||||||||  | |||  ||
seq2  -GCTCCCCCCCTC-AGTGACA-GAGCTGAG-TAGATCAA--GGTCT--AG  990

seq1  TGAAGTTCAGATGTAAAGCAAGTCATTCAGGGTCCTCCCTCCAAACGCAC  1050
      |||   ||||||||  ||| ||||| ||| |||||||||||| ||||| |
seq2  TGA--GTCAGATGT--AGC-AGTCA-TCA-GGTCCTCCCTCC-AACGCCC  1032

seq1  CTACCTCCTTCACATTCCACCTTTA-------------AGATTAAA  1083
      |||||||| ||||| ||||||||||              |||||||
seq2  CTACCTCC-TCACA-TCCACCTTTAGAATAAGCCAGTCCGATTAAA  1076