BAC Information

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BAC

Clone NameB6Ng01-048D19
Chromosome1 (Build37)5 (Build37)
Map Location 7,488,867 - 7,489,95018,084,511 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048D19.bB6Ng01-048D19.g
ACCDH872855DH872856
length1,074907
definitionDH872855|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D19, 5' end.DH872856|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,488,867 - 7,489,950)(18,084,511 - 18,084,577)
sequence
gaattctgtttttacgttgttatactttcaaatccagtccagtgacagtg
aaaagcagtgctatctgtcactaaccaacaataaatgcagaattatctga
cttttgctcaaggttccactggacaaagctgttagaaggagtgctcttgc
gctcttttcccagttcttctttgggtccttggctaacctttcctctttca
ctggtaatttttatggggcatgcaagctttcagtgccttggagattggtt
agttttaatgctcattctctgagtcttgtgtgtcctatttctcataccca
gacctccagacatgattctaacaatgagctattttcccatgttggaatct
ggcaaggtctgtaacctcctctagcctaggcaggatggttcagaccttaa
gccactgaggcggggccacctgcggtgcagctcctctgattcagctagtt
tcctttgatgtgacactacctaccacctgccagtggtgaggccaaaccag
ttctccgagattttcaggagttaactgcaacctgtgaatttggcgactta
ctgctaaaaggctttgctgacaacttggcatcaagacgctagaaacttgg
cgtggcagggaatgtgtttctccctttataagcacagactattattaaac
atttgagccttgatcaggaatgtcttggctccatttctctctcgtccacc
tagttcccctctcttttcagccccggtttgcctcccaggtgaaacccagt
tcatgtgagcctcaggtcggtttgcaacaaaggtcactgcaggagtttgg
aagtgcaggcacccagagtagtgtaatagcacatatggagataggagcat
gacttctccatgtctggcctctccttctactgttggcacttaaacctcag
ataatgagcattccaatttgggatggtattcaattctgatgcagaatgtt
tacttgttcagcattttgctagctgaagacttttatttttattttatttt
ttggatgcagatttttgggggctgtgttgtgttatttatagccaagaacc
ttcacagtgtatattgcaggcact
gaattcttaactgaggaataccaaagggctgagaagcacttgaaaaaatg
ttcaacatccttaatcatcaggaaaatgcaaatcaaaacaaccctgagat
tccacctcacctgacaccagtcagaagagctaagattgaaaattcagctg
acagcagatgctgatgaggatgtggagaaagatgaacattcccccattgc
tggtgggattgtaaatttgtacaaccactctggaaatgagtctggtggtt
tcttagaaaactggacacagtgctaccagaagatccagcaatacctatcc
tgggcatatacccagaagatattccaacttgtaaaaggacacatgctcca
ctatgttcatagaagctttatttataatagccagaagctggaaagaaccc
agatgtccctcaactgagcaaaggattcagaaaatatggtacatttacac
aatggtgtactactcagctattaaaaacaatgaatttatgaaattctttg
gcaaatgggtgtatctggaggatatcatcctgagtgaggtaacccagtca
caaaagaagtcacttgatatgcattcactgataagtggatattagcccag
aaacctaaaatacccaagatacaatttgcaaaacagaagaaaatcaagaa
agaaggaagaccaatgtgcggatactgcaatcctctttagaataggaata
cccatgcaaggagttacagagacaaagtttagaactaatactaaaggatg
gaccatccagagactgccccacctggagatccatcccataatcagccacc
aaatgcagacactgttgcatatgccagcaagattttgctgaaactgccct
gacataactcttttcttttgaggctatgccagtgcctggccaatacagaa
gtggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7488867_7489950
seq2: B6Ng01-048D19.b_47_1120

seq1  GAATTCTGTTTTTACGTTGTTATACTTTCAAATCCAGTCCAGTGACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTTACGTTGTTATACTTTCAAATCCAGTCCAGTGACAGTG  50

seq1  AAAAGCAGTGCTATCTGTCACTAACCAACAATAAATGCAGAATTATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTGCTATCTGTCACTAACCAACAATAAATGCAGAATTATCTGA  100

seq1  CTTTTGCTCAAGGTTCCACTGGACAAAGCTGTTAGAAGGAGTGCTCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCAAGGTTCCACTGGACAAAGCTGTTAGAAGGAGTGCTCTTGC  150

seq1  GCTCTTTTCCCAGTTCTTCTTTGGGTCCTTGGCTAACCTTTCCTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTCCCAGTTCTTCTTTGGGTCCTTGGCTAACCTTTCCTCTTTCA  200

seq1  CTGGTAATTTTTATGGGGCATGCAAGCTTTCAGTGCCTTGGAGATTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATTTTTATGGGGCATGCAAGCTTTCAGTGCCTTGGAGATTGGTT  250

seq1  AGTTTTAATGCTCATTCTCTGAGTCTTGTGTGTCCTATTTCTCATACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAATGCTCATTCTCTGAGTCTTGTGTGTCCTATTTCTCATACCCA  300

seq1  GACCTCCAGACATGATTCTAACAATGAGCTATTTTCCCATGTTGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCAGACATGATTCTAACAATGAGCTATTTTCCCATGTTGGAATCT  350

seq1  GGCAAGGTCTGTAACCTCCTCTAGCCTAGGCAGGATGGTTCAGACCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTCTGTAACCTCCTCTAGCCTAGGCAGGATGGTTCAGACCTTAA  400

seq1  GCCACTGAGGCGGGGCCACCTGCGGTGCAGCTCCTCTGATTCAGCTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAGGCGGGGCCACCTGCGGTGCAGCTCCTCTGATTCAGCTAGTT  450

seq1  TCCTTTGATGTGACACTACCTACCACCTGCCAGTGGTGAGGCCAAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGATGTGACACTACCTACCACCTGCCAGTGGTGAGGCCAAACCAG  500

seq1  TTCTCCGAGATTTTCAGGAGTTAACTGCAACCTGTGAATTTGGCGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGAGATTTTCAGGAGTTAACTGCAACCTGTGAATTTGGCGACTTA  550

seq1  CTGCTAAAAGGCTTTGCTGACAACTTGGCATCAAGACGCTAGAAACTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAAAGGCTTTGCTGACAACTTGGCATCAAGACGCTAGAAACTTGG  600

seq1  CGTGGCAGGGAATGTGTTTCTCCCTTTATAAGCACAGACTATTATTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCAGGGAATGTGTTTCTCCCTTTATAAGCACAGACTATTATTAAAC  650

seq1  ATTTGAGCCTTGATCAGGAATTGTCTTGGCTCCATTTCTCTCTCGTCCAC  700
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTGAGCCTTGATCAGGAA-TGTCTTGGCTCCATTTCTCTCTCGTCCAC  699

seq1  CTAGTTCCCCTCTCTTTTCAGCCCCGGTTTGCCTCCCAGGTGAAACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCCCTCTCTTTTCAGCCCCGGTTTGCCTCCCAGGTGAAACCCAG  749

seq1  TTCATGTGAGCCTCAGGTCGGTTTGCAACAAAGGTCACTGCAGGAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGAGCCTCAGGTCGGTTTGCAACAAAGGTCACTGCAGGAGTTTG  799

seq1  GAAGTGCAGGCACCCAGAGTAGTGTAATAGCACATATGGAGATAGGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCAGGCACCCAGAGTAGTGTAATAGCACATATGGAGATAGGAGCA  849

seq1  TGACTTCTCCATGTCTGGCCCCTCCTTCTACTG-TGGCACTTAAACCTCA  899
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TGACTTCTCCATGTCTGGCCTCTCCTTCTACTGTTGGCACTTAAACCTCA  899

seq1  GATAATGAGCA-TCCAAATTGGGATGGTATTCAATTCTTGATGGCAGACA  948
      ||||||||||| ||||| ||||||||||||||||||| |||| ||||| |
seq2  GATAATGAGCATTCCAATTTGGGATGGTATTCAATTC-TGAT-GCAGA-A  946

seq1  TGTTTACTTGTTCAGCCATTTTGCTAGCTGAAAGACTTTTATTTTTATTT  998
      ||||||||||||||| |||||||||||||| |||||||||||||||| ||
seq2  TGTTTACTTGTTCAG-CATTTTGCTAGCTG-AAGACTTTTATTTTTA-TT  993

seq1  TTATTTTTTTGGAATGCAGATTTTTTGGGGGGCTGTGTGTGTG-TATTTA  1047
      |||||||||  | ||||||||||||  ||||||||||| |||| ||||||
seq2  TTATTTTTT--GGATGCAGATTTTT--GGGGGCTGTGT-TGTGTTATTTA  1038

seq1  TAAGCAAAAGAACTTCACAGTGTAATATGCAGGCACT  1084
      | ||| ||  | ||||||||||||   ||||||||||
seq2  T-AGCCAAGAACCTTCACAGTGTATATTGCAGGCACT  1074

seq1: chr5_18084511_18084577
seq2: B6Ng01-048D19.g_388_453 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAAGCTTCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||| |||| ||||||||
seq2  CTT-TTACAAGTTGGAA  66