BAC Information

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BAC

Clone NameB6Ng01-048F19
Chromosome1 (Build37)
Map Location 180,184,884 - 180,331,767
singlet/doubletdoublet
Overlap geneLOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik
Downstream geneEfcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048F19.bB6Ng01-048F19.g
ACCDH872941DH872942
length964386
definitionDH872941|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F19, 5' end.DH872942|Mus musculus domesticus DNA, BAC clone: B6Ng01-048F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,184,884 - 180,185,842)(180,331,382 - 180,331,767)
sequence
gaattccttttgttctacctctgccgtgtgtttggagctgtcctgggtca
cttaaatacatttatcacagcatcctgtgcttcacaaagacagtggagag
gtcaattcgcctgaaatcacacagatttcctagataacgctgatgctgct
tgcattggcttgactctgagtttctgcccacagcctggagaggtgaacca
ctgaaggatttggtcatcggttcccctcaaaatcagtagagttggaagga
ggatttcctgagtttttaatggatttgagtcaacccatacaaatattcaa
gaaggaaccacaaagtaaaatatgaacctgagcactctagaagatcgtct
agaagcctctaaaccctgggctgaggctgggctgttttatccaagaacca
ccttgccacaagagctgtcaagaagaggtccatcaaccaaccttccatgt
ataagtctgtcatcaactgaagacccaaactgctcaggccaccatcccca
gggaccctgcacatagccttatttgctagatgttcatgattactgtcccc
tctgacacttccaatgtggcaggcaaaaatgctttagtacctgacacttt
ccaagaagcatctctccaccacaccctgtgtcttgagaagtcctctgaac
ctttgtgttctccatttccattgctgcttccgacatttctccactaccca
tctccagccctgccaggtgccactttgctacttcacactcttctgctctt
cctctaacagctttttcctgttctcatcccagtgaccacatccacgaaga
tggtgggtgccatttgcctctgccatcttggcacctttgccagcacctcc
tactcagtcttcatactcatagttactctacccccacacagtcagcattc
tttccctagttaataacaccacatgttccagtctagactagactatacta
gacactcagattgt
tccctagggtctcataacgcaggtgcggtagtgtctgagcactaaggagg
taaaggcagagcagtgaggagttcaccgccatcattcctgaaattcaagg
ccagcctgggctatgtgagaccctgtcaagattcctaaggaagttatgtg
aaatagttcatatacaatgtcttttaatctttatgaggttgctcacactc
ctgttttacaggtgaaatgatttgtatcttttagccaggcagtggtggca
catacttttaaccccagtcctcccgaggcagagacaggatctctgagttt
gaggctgacctggtctagagagagagtggccagggtagccagaactacac
agagagatcctgtcttgggggtaggggtggggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180184884_180185842
seq2: B6Ng01-048F19.b_49_1001

seq1  GAATTCCTTTTGTTCTACCTCTGCCGTGTGTTTGGAGCTGTCCTGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGTTCTACCTCTGCCGTGTGTTTGGAGCTGTCCTGGGTCA  50

seq1  CTTAAATACATTTATCACAGCATCCTGTGCTTCACAAAGACAGTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATACATTTATCACAGCATCCTGTGCTTCACAAAGACAGTGGAGAG  100

seq1  GTCAATTCGCCTGAAATCACACAGATTTCCTAGATAACGCTGATGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCGCCTGAAATCACACAGATTTCCTAGATAACGCTGATGCTGCT  150

seq1  TGCATTGGCTTGACTCTGAGTTTCTGCCCACAGCCTGGAGAGGTGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGCTTGACTCTGAGTTTCTGCCCACAGCCTGGAGAGGTGAACCA  200

seq1  CTGAAGGATTTGGTCATCGGTTCCCCTCAAAATCAGTAGAGTTGGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGATTTGGTCATCGGTTCCCCTCAAAATCAGTAGAGTTGGAAGGA  250

seq1  GGATTTCCTGAGTTTTTAATGGATTTGAGTCAACCCATACAAATATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCTGAGTTTTTAATGGATTTGAGTCAACCCATACAAATATTCAA  300

seq1  GAAGGAACCACAAAGTAAAATATGAACCTGAGCACTCTAGAAGATCGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACCACAAAGTAAAATATGAACCTGAGCACTCTAGAAGATCGTCT  350

seq1  AGAAGCCTCTAAACCCTGGGCTGAGGCTGGGCTGTTTTATCCAAGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTCTAAACCCTGGGCTGAGGCTGGGCTGTTTTATCCAAGAACCA  400

seq1  CCTTGCCACAAGAGCTGTCAAGAAGAGGTCCATCAACCAACCTTCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCACAAGAGCTGTCAAGAAGAGGTCCATCAACCAACCTTCCATGT  450

seq1  ATAAGTCTGTCATCAACTGAAGACCCAAACTGCTCAGGCCACCATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTGTCATCAACTGAAGACCCAAACTGCTCAGGCCACCATCCCCA  500

seq1  GGGACCCTGCACATAGCCTTATTTGCTAGATGTTCATGATTACTGTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGCACATAGCCTTATTTGCTAGATGTTCATGATTACTGTCCCC  550

seq1  TCTGACACTTCCAATGTGGCAGGCAAAAATGCTTTAGTACCTGACACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTTCCAATGTGGCAGGCAAAAATGCTTTAGTACCTGACACTTT  600

seq1  CCAAGAAGCATCTCTCCACCACACCCTGTGTCTTGAGAAGTCCTCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCATCTCTCCACCACACCCTGTGTCTTGAGAAGTCCTCTGAAC  650

seq1  CTTTGTGTTCTCCATTTCCATTGCTGCTTCCGACATTTCTCCACTACCAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTGTGTTCTCCATTTCCATTGCTGCTTCCGACATTTCTCCACTACCCA  700

seq1  TCTCCAGCCCTGCCAGGTGCCAC-TTGCTACTTCACACTCTTCTGCTCTT  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCCAGCCCTGCCAGGTGCCACTTTGCTACTTCACACTCTTCTGCTCTT  750

seq1  CCTCT-ACAGCTTTTTCCTGTTCTCATTCCCAGTGACCACATCCACGAAG  798
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTCTAACAGCTTTTTCCTGTTCTCA-TCCCAGTGACCACATCCACGAAG  799

seq1  ATGGTGGGTGCCATTTGCCTCTGCCATCTTGGCACC-TTGCCAGCACCTC  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGTGGGTGCCATTTGCCTCTGCCATCTTGGCACCTTTGCCAGCACCTC  849

seq1  CTACTCAGTCCTCATACTCATAGTTACTCTACCCCCACACAGTTCAGCA-  896
      |||||||||| ||||||||||||||||||||||||||||||| |||||| 
seq2  CTACTCAGTCTTCATACTCATAGTTACTCTACCCCCACACAG-TCAGCAT  898

seq1  TCCTTCCCTAGTTAATAACAACCACCATTGTCCCAGTCTTAGACCTTAGA  946
      || |||||||||||||||| |||||   ||| |||||| |||||  ||||
seq2  TCTTTCCCTAGTTAATAAC-ACCAC--ATGTTCCAGTC-TAGAC--TAGA  942

seq1  CCTATTACTAGAC  959
       ||| ||||||||
seq2  -CTA-TACTAGAC  953

seq1: chr1_180331382_180331767
seq2: B6Ng01-048F19.g_77_462 (reverse)

seq1  TCTTCCCCACCCCTACCCCCAAGACAGGATCTCTCTGTGTAGTTCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCACCCCTACCCCCAAGACAGGATCTCTCTGTGTAGTTCTGGCT  50

seq1  ACCCTGGCCACTCTCTCTCTAGACCAGGTCAGCCTCAAACTCAGAGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCCACTCTCTCTCTAGACCAGGTCAGCCTCAAACTCAGAGATCC  100

seq1  TGTCTCTGCCTCGGGAGGACTGGGGTTAAAAGTATGTGCCACCACTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCTCGGGAGGACTGGGGTTAAAAGTATGTGCCACCACTGCCT  150

seq1  GGCTAAAAGATACAAATCATTTCACCTGTAAAACAGGAGTGTGAGCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGATACAAATCATTTCACCTGTAAAACAGGAGTGTGAGCAACC  200

seq1  TCATAAAGATTAAAAGACATTGTATATGAACTATTTCACATAACTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGATTAAAAGACATTGTATATGAACTATTTCACATAACTTCCTT  250

seq1  AGGAATCTTGACAGGGTCTCACATAGCCCAGGCTGGCCTTGAATTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTGACAGGGTCTCACATAGCCCAGGCTGGCCTTGAATTTCAGG  300

seq1  AATGATGGCGGTGAACTCCTCACTGCTCTGCCTTTACCTCCTTAGTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCGGTGAACTCCTCACTGCTCTGCCTTTACCTCCTTAGTGCTC  350

seq1  AGACACTACCGCACCTGCGTTATGAGACCCTAGGGA  386
      ||||||||||||||||||||||||||||||||||||
seq2  AGACACTACCGCACCTGCGTTATGAGACCCTAGGGA  386