BAC Information

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BAC

Clone NameB6Ng01-048G03
Chromosome1 (Build37)
Map Location 193,288,811 - 193,318,684
singlet/doubletdoublet
Overlap geneLOC667044
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501
Downstream geneDtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G03.bB6Ng01-048G03.g
ACCDH872957DH872958
length976962
definitionDH872957|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G03, 5' end.DH872958|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,288,811 - 193,289,810)(193,317,707 - 193,318,684)
sequence
gaattcatcaaatgcttccatgttcctctcttgtagcctccaggccccat
tttgttagtgattgatgctcacgattccctttcgatactgataacttcca
cagccccttcaagctaggaaagtatttggaaagtatttgagtctcccttt
caagccgatgtgacttgaagaagaatttgtagccgcttgctttccaggac
tcccgactctcagtaagataaagaagacccaggaaggttttcatctgttg
aaccttatgtttcttcagcttaaagcaatctttctgttaattctgggatt
ccatgtggcttcctatgacataaattcacggttaaaaaaataaataaaca
gcaccagtaggaactaaagcagcatgagggagagtcacagcacaaggcac
agaagcactggctcccacactgtagagagcagaagtgccaggctggaatg
cagagggaaaacacttagtcccagcagcagagaaaggtgacagaaggaag
aatgcaggcttgtgtgctttaaaaagtgtccatttgtagcatagataaca
tgatgttgctacacgttgtaaagatggagaaggtaaagaacttgcagcca
gctttggctatgtgacaccctgtcagatcagaaaacaagataatatttta
gcacagtgtagaaccatgtcaacaatcttggtctgtagctatgctaatga
cctgtccagtggacgccaacagctcctctcgctgccctagaaaaaccatt
tgcattcatttcagtatttctggtcagtacatgtctttccttcagcttcc
tttgaaacccggcagccttcctccttgaatctggggacagaagcctcact
agcagtactagactgagcgccagctgagatgtaaatttaaagtattgtag
tattagtagtatagtagtatttgggtttgactcagcttggactctgactg
ctcagttgtaatcctgccagcgatcg
gaattcacacttgggatggatcatcaaagaaaatgcaagtgcagaagaat
ccaggacctcctggtgatttatcacccaaattgctgtcactggatccctg
ttctcctgggtcccacaggcaaagtttggaacccagatctctgggtctgt
gaagtcagtgttcccctgaactgtcttcaacctttgaatctgggacagtc
ctcaaatgctttgtgttaactccacccctttgtcttctgtgccataacac
cgaatgccttgccaccctaggaatgtagccaaaaggagccagcggcctgc
atttgggactcagaacaaataccagcagtcacagcatcccacagagctct
ggaggtgctgagaaacctgcacatagacttgttgtctgctttctactagc
agaacaatgttggcccaggcagaagaggattcagggatatgaaggctaag
gtgtcttgaatgtggatctaagacagacctgatggctcccagagtctgaa
tcttattcctgaatcttccttcttcagcctcaaggcccagcaccaccatc
ctgatctctgaactctggtgttgaccacaggaaaacgcctttgcttgttc
ttggcaaccctccaccacacaaggacaaaaataggtcagtgcacctctcc
caagctctttgctttcactgatgagaaacaaacgcccgtttggtttactt
tcccttccaacattcaggaaacctctcgactgagagattggggtgggggt
tagtgaagccaagagttttagttttgaaacctaaaccatttgacaggtcc
cacaagtactgaaagccaagagctctgtggttcagtcaaccactcttgca
cattgggtcttagtcactaaacatactcagcgttatttatccggttctta
atgcacagaaggaacacagcgagtaggtgtgcgtcacgcagaagacctcc
tatggagccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193288811_193289810
seq2: B6Ng01-048G03.b_48_1023

seq1  GAATTCATCAAATGCTTCCATGTTCCTCTCTTGTAGCCTCCAGGCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAATGCTTCCATGTTCCTCTCTTGTAGCCTCCAGGCCCCAT  50

seq1  TTTGTTAGTGATTGATGCTCACGATTCCCTTTCGATACTGATAACTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTGATTGATGCTCACGATTCCCTTTCGATACTGATAACTTCCA  100

seq1  CAGCCCCTTCAAGCTAGGAAAGTATTTGGAAAGTATTTGAGTCTCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTTCAAGCTAGGAAAGTATTTGGAAAGTATTTGAGTCTCCCTTT  150

seq1  CAAGCCGATGTGACTTGAAGAAGAATTTGTAGCCGCTTGCTTTCCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCGATGTGACTTGAAGAAGAATTTGTAGCCGCTTGCTTTCCAGGAC  200

seq1  TCCCGACTCTCAGTAAGATAAAGAAGACCCAGGAAGGTTTTCATCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGACTCTCAGTAAGATAAAGAAGACCCAGGAAGGTTTTCATCTGTTG  250

seq1  AACCTTATGTTTCTTCAGCTTAAAGCAATCTTTCTGTTAATTCTGGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATGTTTCTTCAGCTTAAAGCAATCTTTCTGTTAATTCTGGGATT  300

seq1  CCATGTGGCTTCCTATGACATAAATTCACGGTTAAAAAAATAAATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGCTTCCTATGACATAAATTCACGGTTAAAAAAATAAATAAACA  350

seq1  GCACCAGTAGGAACTAAAGCAGCATGAGGGAGAGTCACAGCACAAGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTAGGAACTAAAGCAGCATGAGGGAGAGTCACAGCACAAGGCAC  400

seq1  AGAAGCACTGGCTCCCACACTGTAGAGAGCAGAAGTGCCAGGCTGGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACTGGCTCCCACACTGTAGAGAGCAGAAGTGCCAGGCTGGAATG  450

seq1  CAGAGGGAAAACACTTAGTCCCAGCAGCAGAGAAAGGTGACAGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAAAACACTTAGTCCCAGCAGCAGAGAAAGGTGACAGAAGGAAG  500

seq1  AATGCAGGCTTGTGTGCTTTAAAAAGTGTCCATTTGTAGCATAGATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGCTTGTGTGCTTTAAAAAGTGTCCATTTGTAGCATAGATAACA  550

seq1  TGATGTTGCTACACGTTGTAAAGATGGAGAAGGTAAAGAACTTGCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGCTACACGTTGTAAAGATGGAGAAGGTAAAGAACTTGCAGCCA  600

seq1  GCTTTGGCTATGTGACACCCTGTCAGATCAGAAAACAAGATAATATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTATGTGACACCCTGTCAGATCAGAAAACAAGATAATATTTTA  650

seq1  GCACAGTGTAGAACCATGTCAACAATCTTGGTCTGTAGCTATGCTAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGTAGAACCATGTCAACAATCTTGGTCTGTAGCTATGCTAATGA  700

seq1  CCTGTCCAGTGGACGCCAACAGCTCCTCTCGCTGCCCTAGAAAAACCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAGTGGACGCCAACAGCTCCTCTCGCTGCCCTAGAAAAACCATT  750

seq1  TGCATTCATTTCAGTATTTCTGGTCAGTACATGTCTTTCCTTCAGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATTTCAGTATTTCTGGTCAGTACATGTCTTTCCTTCAGCTTCC  800

seq1  TTTGAAACCCGGCAGCCTTCCTCCTTGAATCTGGGGACAGAAGCCTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACCCGGCAGCCTTCCTCCTTGAATCTGGGGACAGAAGCCTCACT  850

seq1  AGCAAGTACTAGAACTGAGCGCCCAGCTGAGATGTAAATTTTAAAAGTAT  900
      ||| |||||||| |||||||| |||||||||||||||||||  |||||||
seq2  AGC-AGTACTAG-ACTGAGCG-CCAGCTGAGATGTAAATTT--AAAGTAT  895

seq1  TTGTTAGTATTTAGTTAGTATTAGTTAGTATTTGGGTTTGGACTCAGGGC  950
      |   ||||| |||| ||||| ||| |||||||||||||| |||||||   
seq2  T--GTAGTA-TTAG-TAGTA-TAG-TAGTATTTGGGTTT-GACTCAG---  935

seq1  CTTGGACTTCTGGACTTGGCTCAGTTGGTAAACCCCTTGCCCAGCGATCG  1000
      ||||||| ||| ||||  |||||||| |||| ||   || ||||||||||
seq2  CTTGGAC-TCT-GACT--GCTCAGTT-GTAATCC---TG-CCAGCGATCG  976

seq1: chr1_193317707_193318684
seq2: B6Ng01-048G03.g_67_1028 (reverse)

seq1  GAAGGCTCCATTAGAGAGTTCTCTCTTGCGTGACGCACAAACCTACCTCG  50
      |||||||||| ||| ||| ||| || ||||||||||||  ||||| ||||
seq2  GAAGGCTCCA-TAG-GAGGTCT-TC-TGCGTGACGCAC--ACCTA-CTCG  43

seq1  CTGTTGTTCCTCTGTTTGCATCTAAGATACCGGAATAAATAAACGCTGAG  100
      ||| ||||||| | | ||||| ||||| ||||| |||||| |||||||||
seq2  CTG-TGTTCCT-TCTGTGCAT-TAAGA-ACCGG-ATAAAT-AACGCTGAG  87

seq1  CTATGTTTAGTGACTAAGACACAATGTGCAAGAGT-GTTGACTGGACCAC  149
       ||||||||||||||||||| |||||||||||||| |||||||| |||||
seq2  -TATGTTTAGTGACTAAGACCCAATGTGCAAGAGTGGTTGACTGAACCAC  136

seq1  AGAGCTCTTGGCTTTCAGTACTTTGTGGGACCTGTCAAATGGTTTAGGTT  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGCTCTTGGCTTTCAGTAC-TTGTGGGACCTGTCAAATGGTTTAGGTT  185

seq1  TCAAAACTTAAAACTCTTGGCTTCACTAACCCCCAACCCCAATCTCTCAG  249
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TCAAAAC-TAAAACTCTTGGCTTCACTAACCCCC-ACCCCAATCTCTCAG  233

seq1  TCGAGAGGTTTCCTGAATGTTGGAAGGGAAAGTAAACCAAACGGGCGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGGTTTCCTGAATGTTGGAAGGGAAAGTAAACCAAACGGGCGTTT  283

seq1  GTTTCTCATCAGTGAAAGCAAAGAGCTTGGGAGAGGTGCACTGACCTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCATCAGTGAAAGCAAAGAGCTTGGGAGAGGTGCACTGACCTATT  333

seq1  TTTGTCCTTGTGTGGTGGAGGGTTGCCAAGAACAAGCAAAGGCGTTTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGTGTGGTGGAGGGTTGCCAAGAACAAGCAAAGGCGTTTTCC  383

seq1  TGTGGTCAACACCAGAGTTCAGAGATCAGGATGGTGGTGCTGGGCCTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAACACCAGAGTTCAGAGATCAGGATGGTGGTGCTGGGCCTTGA  433

seq1  GGCTGAAGAAGGAAGATTCAGGAATAAGATTCAGACTCTGGGAGCCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGAAGGAAGATTCAGGAATAAGATTCAGACTCTGGGAGCCATCA  483

seq1  GGTCTGTCTTAGATCCACATTCAAGACACCTTAGCCTTCATATCCCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTTAGATCCACATTCAAGACACCTTAGCCTTCATATCCCTGAA  533

seq1  TCCTCTTCTGCCTGGGCCAACATTGTTCTGCTAGTAGAAAGCAGACAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTGCCTGGGCCAACATTGTTCTGCTAGTAGAAAGCAGACAACA  583

seq1  AGTCTATGTGCAGGTTTCTCAGCACCTCCAGAGCTCTGTGGGATGCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTGCAGGTTTCTCAGCACCTCCAGAGCTCTGTGGGATGCTGTG  633

seq1  ACTGCTGGTATTTGTTCTGAGTCCCAAATGCAGGCCGCTGGCTCCTTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGTATTTGTTCTGAGTCCCAAATGCAGGCCGCTGGCTCCTTTTG  683

seq1  GCTACATTCCTAGGGTGGCAAGGCATTCGGTGTTATGGCACAGAAGACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTCCTAGGGTGGCAAGGCATTCGGTGTTATGGCACAGAAGACAA  733

seq1  AGGGGTGGAGTTAACACAAAGCATTTGAGGACTGTCCCAGATTCAAAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGAGTTAACACAAAGCATTTGAGGACTGTCCCAGATTCAAAGGT  783

seq1  TGAAGACAGTTCAGGGGAACACTGACTTCACAGACCCAGAGATCTGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGTTCAGGGGAACACTGACTTCACAGACCCAGAGATCTGGGTT  833

seq1  CCAAACTTTGCCTGTGGGACCCAGGAGAACAGGGATCCAGTGACAGCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTTGCCTGTGGGACCCAGGAGAACAGGGATCCAGTGACAGCAAT  883

seq1  TTGGGTGATAAATCACCAGGAGGTCCTGGATTCTTCTGCACTTGCATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATAAATCACCAGGAGGTCCTGGATTCTTCTGCACTTGCATTTT  933

seq1  CTTTGATGATCCATCCCAAGTGTGAATTC  978
      |||||||||||||||||||||||||||||
seq2  CTTTGATGATCCATCCCAAGTGTGAATTC  962