BAC Information

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BAC

Clone NameB6Ng01-048H14
Chromosome1 (Build37)
Map Location 101,319,244 - 101,320,314
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H14.bB6Ng01-048H14.g
ACCDH873020DH873021
length1,1591,039
definitionDH873020|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H14, 5' end.DH873021|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaaaaccattgaggttttggaaataaactcttggaaatagaa
aacctaggaaagatgtcaggagccattgatgcaagcataaccaacagaat
acaagagatagaagagagaatctcaggtgcagaggatattatagaaaaca
ttgacacaataatcaaagaaaatgtgaattgtaaaaaaatccaaacccaa
aatatccatgaaatccaggacacaatgagaagacaaaacctaaggataat
aggtatagacaagaaggaagatttccaacttaaagggccagtaaatatct
tcaacaaaattatagaagaaaatttcccatacctaaacaaagagatgcta
atgaacatacaagaagcctatagaactccagatagtttggaccagcaaag
aaactcctcctttcacataataggcaaaacacctaatgcacaaaacaaag
aaagaatattaaaagcaataagtgaaataggtcaagtaacatataaaggc
agacctatcagaattatactgacttttttccagagactataaaagccaga
ggatcctgggcagatttcatacaggccctaagagaacacaaatgccagcc
caggctactacacccagcaaagctctcaattaccatagatggagaaaaca
aggtattccatgacaaaaccaaatttacacagaatcttcccacaaatcca
gcctttcaaagcataataaatggaaaacttcaatacaaagagggaaactg
agcttgagaaaaagccagaaagtagtccatcaacaaacctaaatgaagat
agcctcaagaacagaatcccaactctaacacaaaataacaggaagcaacc
attactcttaatatcaatggactcaattccctataaaaagacatagacta
agactagttatataacagatccaaattttgctgcatagagaaacctactt
caggaaaaagaagacactactagaacagatcacttagcaaacattaagtg
gatgttccagtcagctattggatgatcacagaccccatggaggagctaga
gaagtatcaggctaagagatctgcacctctaggtgcacaactagtactac
aggtaccggactctgaactctggctgctatgtatcaaggatggctagttg
ggcatacat
gaattcagatttggtgctgaatcataatttggtctcataattagtaatac
agagaattatataaagagaaaaatgtattttttaatgatctttattaaga
gaaaaacaaaatgactgtgaaaagaaatgattgggcttttaactgggaat
atagaaggagagagaggacaatatgatggggcctgagagaaatccctctg
ttccctaaaagagcttcattaccagagaaagttaggctgaacaatataat
gtgggtcatgaaaataaagagcattcaattctaaaagaaattgggagagt
gtaattcttaaaagtcttttgagggagtgaacaagtttctttttgcttga
ccagctctgtgtagccatcttttcagaaatcaaattaagactaaagttgt
aatacaaggccatcttgattttacattagggtacccatacctaacgttaa
aacaagagcctgtacttgaagttaatagtaactttatacacaatagtgaa
taattttttaaaaatctagatatccttcagggtatcaataaattatacaa
ctatacaatgtgaaagtaattagtaacaacaattaatgaaatattaagac
atacattgtcaatgtagttgaatcactgggtaatgtgctgaatttttaaa
atttctacctaaagtcaaattttatagcagggataatcattgtgtttaaa
tttaaaaccaatgcctccttcttaaagtgtaaaagttatgctaagaaatg
aagggtaaatattgggatagaagagtgtgtccattattgaaaatgagata
aaaaccccactaccatattgcctcactaatattataacaaatatttaact
atgatagacattatcttttagcatagattagcactaatatcactttcatt
ttatgatagaataaatagtagaggatcaatctgcatttcacagtatgaga
gagatcatctcagagaggcaaaatagaagtactatggtcttataagtcat
gaggtcagctgattttagctagctcattctcatagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101319244_101320314
seq2: B6Ng01-048H14.g_66_1104

seq1  GAATTCAGATTTGGTGCTGAATCATAATTTGGTCTCATAATTAGTAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTGGTGCTGAATCATAATTTGGTCTCATAATTAGTAATAC  50

seq1  AGAGAATTATATAAAGAGAAAAATGTATTTTTTAATGATCTTTATTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTATATAAAGAGAAAAATGTATTTTTTAATGATCTTTATTAAGA  100

seq1  GAAAAACAAAATGACTGTGAAAAGAAATGATTGGGCTTTTAACTGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAATGACTGTGAAAAGAAATGATTGGGCTTTTAACTGGGAAT  150

seq1  ATAGAAGGAGAGAGAGGACAATATGATGGGGCCTGAGAGAAATCCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGAGAGAGAGGACAATATGATGGGGCCTGAGAGAAATCCCTCTG  200

seq1  TTCCCTAAAAGAGCTTCATTACCAGAGAAAGTTAGGCTGAACAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAAGAGCTTCATTACCAGAGAAAGTTAGGCTGAACAATATAAT  250

seq1  GTGGGTCATGAAAATAAAGAGCATTCAATTCTAAAAGAAATTGGGAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCATGAAAATAAAGAGCATTCAATTCTAAAAGAAATTGGGAGAGT  300

seq1  GTAATTCTTAAAAGTCTTTTGAGGGAGTGAACAAGTTTCTTTTTGCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTTAAAAGTCTTTTGAGGGAGTGAACAAGTTTCTTTTTGCTTGA  350

seq1  CCAGCTCTGTGTAGCCATCTTTTCAGAAATCAAATTAAGACTAAAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTGTGTAGCCATCTTTTCAGAAATCAAATTAAGACTAAAGTTGT  400

seq1  AATACAAGGCCATCTTGATTTTACATTAGGGTACCCATACCTAACGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGCCATCTTGATTTTACATTAGGGTACCCATACCTAACGTTAA  450

seq1  AACAAGAGCCTGTACTTGAAGTTAATAGTAACTTTATACACAATAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGCCTGTACTTGAAGTTAATAGTAACTTTATACACAATAGTGAA  500

seq1  TAATTTTTTAAAAATCTAGATATCCTTCAGGGTATCAATAAATTATACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTAAAAATCTAGATATCCTTCAGGGTATCAATAAATTATACAA  550

seq1  CTATACAATGTGAAAGTAATTAGTAACAACAATTAATGAAATATTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAATGTGAAAGTAATTAGTAACAACAATTAATGAAATATTAAGAC  600

seq1  ATACATTGTCAATGTAGTTGAATCACTGGGTAATGTGCTGAATTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTCAATGTAGTTGAATCACTGGGTAATGTGCTGAATTTTTAAA  650

seq1  ATTTCTACCTAAAGTCAAATTTTATAGCAGGGATAATCATTGTGTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACCTAAAGTCAAATTTTATAGCAGGGATAATCATTGTGTTTAAA  700

seq1  TTTAAAACCAATGCCTCCTTCTTAAAGTGTAAAAGTTATGCTAAGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCAATGCCTCCTTCTTAAAGTGTAAAAGTTATGCTAAGAAATG  750

seq1  AAGGGTAAATATTGGGATAGAAGAGTGTGTCCATTATTGAAAATGAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAATATTGGGATAGAAGAGTGTGTCCATTATTGAAAATGAGATA  800

seq1  AAAACCCCACTACCATATTGCCTCACTAAATAATTATAACAAATATTTAA  850
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AAAACCCCACTACCATATTGCCTCACTAA--TATTATAACAAATATTTAA  848

seq1  CTATGATAGACATTATCTTTTAAGCAATAGATTAAGCACTAATATCACTT  900
      ||||||||||||||||||||| ||| ||||||| ||||||||||||||||
seq2  CTATGATAGACATTATCTTTT-AGC-ATAGATT-AGCACTAATATCACTT  895

seq1  TCATTTTATGAATAAGAATAAAATAGTAGAAGATTCAATCTGCAATTTCA  950
      |||||||||||   ||||| |||||||||| || ||||||||| ||||||
seq2  TCATTTTATGA--TAGAAT-AAATAGTAGAGGA-TCAATCTGC-ATTTCA  940

seq1  CCAGTAATGGAGAGAGATCATCTCAGGAGGAGGGCAAAAATAGAAAGTAC  1000
       |||||   ||||||||||||||||    ||| |  ||||||| ||||||
seq2  -CAGTA--TGAGAGAGATCATCTCA----GAGAGGCAAAATAG-AAGTAC  982

seq1  TATGAGTCTTATTAAAGTCATGTATGGGTCCAGCTGATTTTTTAAAGCTA  1050
      |||| |||||||  ||||||||    ||| |||||||||||    |||||
seq2  TATG-GTCTTAT--AAGTCATG---AGGT-CAGCTGATTTT----AGCTA  1021

seq1  GGCTCAAATTCTCATAGTCAG  1071
       ||||  ||||||||||||||
seq2  -GCTC--ATTCTCATAGTCAG  1039