BAC Information

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BAC

Clone NameB6Ng01-048J12
Chromosome1 (Build37)
Map Location 129,018,336 - 129,019,354
singlet/doubletsinglet
Overlap genenone
Upstream geneE030049G20Rik, LOC383559
Downstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048J12.bB6Ng01-048J12.g
ACCDH873107DH873108
length1,189991
definitionDH873107|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J12, 5' end.DH873108|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatatattttacatattagtcctcttttggatatggagttgg
tgaaattattttcccattctgtaggctgccactttgatggtgtcatttgc
cttacagaagcatttctgtttgatgagatcctatttactaattattgacc
cattgcctgcactatcagtgttctatacagaaagtcatctcctgtgccaa
tgctttcaaggctgtttcccccatttctttctcttgttctttctttcttt
tttcttactttcttttcttttttaattttttattttgagatgtggtttct
ctgtgtaaccccagcattcttcaacttggtgtgtagaccaggctggcctt
gaattcagaattctgcttatttctgcttcgtgtgctgggattaaagacat
atactatcacacctggctgcccatttcctttcctatcatcttcaatgtat
ctggttttatgttgaggtctttgatcctcttggacttaagttttgtgcag
tatggtacatattattacatttacattcttctacatgcaggcatcagttt
gatcagcaagatttgttgaaagatgctatctttttcccagtgtatatttc
tggcttctttataaaagaaaaaataatcaggtatatagcttatgtctatg
tcttcaattcagctatgttgatcaatgtgtctgtttttatgccaatacca
tggagtttttattatagctctgaagtacaagttgaaatcagggatggtga
tacctccagcagttctttaattgctcagattgtcttagttatcctgggtt
ttgtggttttgcatatgaagttgagtgttgtcttttcaagatctataaag
aattgtgttgggatcttgatgagaactgaattgactctgtacattgcttt
tggtaggatggcattttactttgtaaatcctactgatcatgaagatgaac
gatcttcccatagtcaggtacgtctcagttctgtattgcaagacgtcagt
ttatcatgtagaattcactgctcggtgaaatagccaggattaatatattg
agctgtgtaaggcgtgggttccggatctttaactccctattgattggagc
atcagtttttaaactcggaccagctcttcaaggttacgggtacgtgcggg
aagttaaggcttatggatacaaaaccggatccacacgga
gaattctgttaataatgtactatgtagaaccatgaaaattctgatgttac
tatcaattcagcaatatagagaaagcacaatttgttggtctgtctagatc
ttatgtttacaagtcctctagttgctcaatagttcaccaagaaaataata
ttagtaaaactctcctctcctgaggactcagaatattctatctgagagcc
ttaatacatttgaattaaaaaaaaaaaccaagaatggtgagacaaagttg
aatttcaaataagatttttaagagtattcattcaacaatatttattaagc
caggactactgtgtactattcaaaaaaaattctgtgggcatataggaata
aaaaacaaactgattccattttaagtcagtagttcttgaagtaaaatgaa
cagtaagtgttctattgcatgccactgggtagtattgtagacagtgctgg
tggtgtgattctagaacctgtctgcggtcttattttcatttctgttgcta
tgataaaatattgatcgaaggcaacttgggggaagaaggtttatttggct
cacaattatagattatagttcatcatttcaagcagagaaaaatgaatgca
ctatgcttacccagtcagctaactttcttcactctgatacagttcagagc
ctatcctagggactgggtcaactaacagataagacaatcctccacagaca
tggccacaggccaatctgatctagatgagtccttcagtcagattctcttc
ctaggtgactctaggttgtggcaagttgaccttttaaacgaatagtcaca
gtaagcacaaacaaattactatttgtaagataatgtttgttgttgttttt
tatataagaaaatggtactaaagattggtatgcacatacacatcatatta
gacgcctatacttactctggtgggtgacaccatatgtgatttcagccaac
agtgtgaatgtcaaagcttatctgtatactgtatgtcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129018336_129019354
seq2: B6Ng01-048J12.g_66_1056 (reverse)

seq1  TGGTGACATTTACAGTTATAACAAGATAAGCTTTGAACATTTTCCACAAC  50
      ||||||||  ||||| ||||   |||||||||||| |||||   ||| ||
seq2  TGGTGACA--TACAG-TATA--CAGATAAGCTTTG-ACATT---CAC-AC  40

seq1  TTTGTTTGGCTTGAAAATACAACATATGGTGTCACCCCACCAGAGTAAGG  100
      |    ||||| ||||   |  ||||||||||||| ||||||||||||| |
seq2  T---GTTGGC-TGAA---ATCACATATGGTGTCA-CCCACCAGAGTAA-G  81

seq1  TATAGGCCTTCTAATATGATTGTGTATGTGCATACCAATTCTTTAGTAAC  150
      |||||| | |||||||||| |||||||||||||||||| |||||||| ||
seq2  TATAGG-CGTCTAATATGA-TGTGTATGTGCATACCAA-TCTTTAGT-AC  127

seq1  CATTTTTCTTATATAAAAAAACAAACAAACAAACCTTATTCTTACAAATA  200
      || ||||||||||| |||||||||   ||||||| ||| |||||||||||
seq2  CA-TTTTCTTATAT-AAAAAACAA--CAACAAACATTA-TCTTACAAATA  172

seq1  GTAATTTGTTTGTGCTTACTGTGACTATTCGTTTAAAAGGTCAACTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGTTTGTGCTTACTGTGACTATTCGTTTAAAAGGTCAACTTGCC  222

seq1  ACAACCTAGAGTCACCTAGGAAGAGAATCTGACTGAAGGACTCATCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGAGTCACCTAGGAAGAGAATCTGACTGAAGGACTCATCTAGA  272

seq1  TCAGATTGGCCTGTGGCCATGTCTGTGGAGGATTGTCTTATCTGTTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGCCTGTGGCCATGTCTGTGGAGGATTGTCTTATCTGTTAGTT  322

seq1  GACCCAGTCCCTAGGATAGGCTCTGAACTGTATCAGAGTGAAGAAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTCCCTAGGATAGGCTCTGAACTGTATCAGAGTGAAGAAAGTTA  372

seq1  GCTGACTGGGTAAGCATAGTGCATTCATTTTTCTCTGCTTGAAATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGGGTAAGCATAGTGCATTCATTTTTCTCTGCTTGAAATGATGA  422

seq1  ACTATAATCTATAATTGTGAGCCAAATAAACCTTCTTCCCCCAAGTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCTATAATTGTGAGCCAAATAAACCTTCTTCCCCCAAGTTGCC  472

seq1  TTCGATCAATATTTTATCATAGCAACAGAAATGAAAATAAGACCGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATCAATATTTTATCATAGCAACAGAAATGAAAATAAGACCGCAGAC  522

seq1  AGGTTCTAGAATCACACCACCAGCACTGTCTACAATACTACCCAGTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAGAATCACACCACCAGCACTGTCTACAATACTACCCAGTGGCA  572

seq1  TGCAATAGAACACTTACTGTTCATTTTACTTCAAGAACTACTGACTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGAACACTTACTGTTCATTTTACTTCAAGAACTACTGACTTAAA  622

seq1  ATGGAATCAGTTTGTTTTTTATTCCTATATGCCCACAGAATTTTTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCAGTTTGTTTTTTATTCCTATATGCCCACAGAATTTTTTTTGA  672

seq1  ATAGTACACAGTAGTCCTGGCTTAATAAATATTGTTGAATGAATACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACACAGTAGTCCTGGCTTAATAAATATTGTTGAATGAATACTCTT  722

seq1  AAAAATCTTATTTGAAATTCAACTTTGTCTCACCATTCTTGGTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTATTTGAAATTCAACTTTGTCTCACCATTCTTGGTTTTTTTT  772

seq1  TTTAATTCAAATGTATTAAGGCTCTCAGATAGAATATTCTGAGTCCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCAAATGTATTAAGGCTCTCAGATAGAATATTCTGAGTCCTCAG  822

seq1  GAGAGGAGAGTTTTACTAATATTATTTTCTTGGTGAACTATTGAGCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGTTTTACTAATATTATTTTCTTGGTGAACTATTGAGCAACT  872

seq1  AGAGGACTTGTAAACATAAGATCTAGACAGACCAACAAATTGTGCTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTTGTAAACATAAGATCTAGACAGACCAACAAATTGTGCTTTCT  922

seq1  CTATATTGCTGAATTGATAGTAACATCAGAATTTTCATGGTTCTACATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGCTGAATTGATAGTAACATCAGAATTTTCATGGTTCTACATAG  972

seq1  TACATTATTAACAGAATTC  1019
      |||||||||||||||||||
seq2  TACATTATTAACAGAATTC  991