BAC Information

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BAC

Clone NameB6Ng01-048M02
Chromosome1 (Build37)4 (Build37)
Map Location 111,785,278 - 111,786,2946,530,845 - 6,531,123
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666508
Downstream geneCdh7, LOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048M02.bB6Ng01-048M02.g
ACCDH873220DH873221
length988798
definitionDH873220|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M02, 5' end.DH873221|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,785,278 - 111,786,294)(6,530,845 - 6,531,123)
sequence
gaattccacttgctatggaaatcttaccaattgaatctgtagaaacagaa
taaatatgacctataaatagtgatgattatgtgagatctatggagttaaa
actgctgtaaaaaacaaaaaaaaacaaaaaaaaaaacaaaaaacaaaaaa
aaaaaaaacaccaatctccctgatagagctacatcatttaataatgccca
ctccacactaacaattatcgtagctgaaaaactatattagattttcaacc
atagccctcctcatcaacctaaatgtcatatatgtgtgtatatatgacat
aatatatgtcatatttaaatatatcttagttttatttgctcaacaaacat
cttgggtagtatagctcctgtctcagaccataaatatatatgtaaatatc
aaagttttctatgacttgctttcaaataaaaattcaagattggagaagat
tgagtgtgaaaataaaattgtttttgaaattacataatgggaaatcattt
gagtccgtagatagaaagcagggaagaaaagtggatggtaagggaaatcc
ccaaatatctcaaagaactcattcagtgggactacatgaaatgtcacacc
ttaagatcagtattcaggttcagaaattgtctgaggcaagagaatgaaat
ggaattttgtacctagctgctactggtggtcttgaaaatcaaaagcttca
taaactggatgattgttcccaaagtcctctgagatttgagtaatactcag
atctagagactgtaagtacagactttacggtgtaaagtaacttttattct
cctgatgtaattgactcaaggcttactgcctcctctgctaaactaaggct
agtctacaagcttctagcacttgtacatctattagcatagatttttcagc
tgctgagactgctggtcaatagctcaccctttgtagttttactgagtctg
gcactgtcactagctgtctgctcacactgactgatgca
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcaggagctgtcacaccatatcaggtgctgaaacgtc
acgctgcggttataaaagcagcgccattttcccggttcggaatcttcctg
agaagcaagcaataaagctcttgccgtggaagattctggcttgttgcatc
tttcttgctggtcgagcgggacgcaatagatccatcccataatcagcctc
caaacgctgacaccattgcatacactagcaagattttgctgaaaggaccc
tgatatagctgtctcttgtgagactatgctggggcctggcaaacacagaa
gtggatgctcacagacagctattggatggatcacagggcccccaatggag
gtgctagataaaatacccaagaagctaaagagatatgcaaccctataggt
gaaacaacattatgaactaaccagtaccccggagctcttgactctagctg
catatgtatcaaaagatggcctattcggccatcactggaaagagaggtcc
attggacttgcaaactttatatgccccattacaggggaacgccagggcca
aaaagtgggagtttctcataagagaaactttactaaggctcaaagcacat
aatacatctcatacaataatagtgtgagacttcaacaccactgtcaccaa
tggacagatcacagatacagaaactaaacagagacacagggaaactaaca
gaagttatgatctcaatggatttattgatatgtatagaacatttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111785278_111786294
seq2: B6Ng01-048M02.b_46_1033

seq1  GAATTCCACTTGCTATGGAAATCTTACCAATTGAATCTGTAGAAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGCTATGGAAATCTTACCAATTGAATCTGTAGAAACAGAA  50

seq1  TAAATATGACCTATAAATAGTGATGATTATGTGAGATCTATGGAGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGACCTATAAATAGTGATGATTATGTGAGATCTATGGAGTTAAA  100

seq1  ACTGCTGTAAAAAACAAAAAAAAACAAAAAAAAAAACAAAAAACAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTAAAAAACAAAAAAAAACAAAAAAAAAAACAAAAAACAAAAAA  150

seq1  AAAAAAAACACCAATCTCCCTGATAGAGCTACATCATTTAATAATGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACACCAATCTCCCTGATAGAGCTACATCATTTAATAATGCCCA  200

seq1  CTCCACACTAACAATTATCGTAGCTGAAAAACTATATTAGATTTTCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACTAACAATTATCGTAGCTGAAAAACTATATTAGATTTTCAACC  250

seq1  ATAGCCCTCCTCATCAACCTAAATGTCATATATGTGTGTATATATGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTCCTCATCAACCTAAATGTCATATATGTGTGTATATATGACAT  300

seq1  AATATATGTCATATTTAAATATATCTTAGTTTTATTTGCTCAACAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTCATATTTAAATATATCTTAGTTTTATTTGCTCAACAAACAT  350

seq1  CTTGGGTAGTATAGCTCCTGTCTCAGACCATAAATATATATGTAAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTAGTATAGCTCCTGTCTCAGACCATAAATATATATGTAAATATC  400

seq1  AAAGTTTTCTATGACTTGCTTTCAAATAAAAATTCAAGATTGGAGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTATGACTTGCTTTCAAATAAAAATTCAAGATTGGAGAAGAT  450

seq1  TGAGTGTGAAAATAAAATTGTTTTTGAAATTACATAATGGGAAATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGAAAATAAAATTGTTTTTGAAATTACATAATGGGAAATCATTT  500

seq1  GAGTCCGTAGATAGAAAGCAGGGAAGAAAAGTGGATGGTAAGGGAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCGTAGATAGAAAGCAGGGAAGAAAAGTGGATGGTAAGGGAAATCC  550

seq1  CCAAATATCTCAAAGAACTCATTCAGTGGGACTACATGAAATGTCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATCTCAAAGAACTCATTCAGTGGGACTACATGAAATGTCACACC  600

seq1  TTAAGATCAGTATTCAGGTTCAGAAATTGTCTGAGGCAAGAGAATGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCAGTATTCAGGTTCAGAAATTGTCTGAGGCAAGAGAATGAAAT  650

seq1  GGAATTTTGTACCTAGCTGCTACTGGTGGTCTTGAAAATCAAAAGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTGTACCTAGCTGCTACTGGTGGTCTTGAAAATCAAAAGCTTCA  700

seq1  TAAACTGGATGATTGTTCCCAAAGTCCTCTGAAGATTTGAGTAATACTCA  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAACTGGATGATTGTTCCCAAAGTCCTCTG-AGATTTGAGTAATACTCA  749

seq1  GATCTAGAGACTGTAAGTACAGACTTTTACGGTGTAAAAGTAACTTTTAT  800
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GATCTAGAGACTGTAAGTACAGAC-TTTACGGTGT-AAAGTAACTTTTAT  797

seq1  TCTCCTGATGTAATTGACTCCAAGGCTTACTGCCTCCTTCTGCTAAACTA  850
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TCTCCTGATGTAATTGACT-CAAGGCTTACTGCCTCC-TCTGCTAAACTA  845

seq1  GGCTTAGTCCTACAAGCTTCTAGCCACCTGGTACAATCTAATTTAGGCAT  900
       |  |||| |||||||||||||||   || |||| |||||  ||| ||||
seq2  AGGCTAGT-CTACAAGCTTCTAGC--ACTTGTAC-ATCTA--TTA-GCAT  888

seq1  AGAATTTTTTCAGCTGCTGAGACTTGCTGGTCAATAAGCTCACCCTTTGT  950
      |||  |||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AGA--TTTTTCAGCTGCTGAGAC-TGCTGGTCAAT-AGCTCACCCTTTGT  934

seq1  AGTTTTTACTGAGTTCTGGCCAACTGTTTCCACTTAGCTGTTCTGGCTCA  1000
      || |||||||||| ||||||  |||||   ||| |||||| ||| |||||
seq2  AG-TTTTACTGAG-TCTGGC--ACTGT---CAC-TAGCTG-TCT-GCTCA  974

seq1  AACAACTGACTGATGCA  1017
          |||||||||||||
seq2  ---CACTGACTGATGCA  988

seq1: chr4_6530845_6531123
seq2: B6Ng01-048M02.g_293_571 (reverse)

seq1  ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATG  50

seq1  TTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCT  100
      ||||| |||||||||||||||| ||| |||||||| |||||||| ||| |
seq2  TTGTTTCACCTATAGGGTTGCATATCTCTTTAGCTTCTTGGGTATTTTAT  100

seq1  CTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAG  150
      ||||| ||||||||||| ||||||||||||||||| |||||| |||||||
seq2  CTAGCACCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGTCTGTGAG  150

seq1  CATTCACTTCTGTGTTTGCTAGGCCCTGGCATAGTGTCACAAGAGACAGC  200
      ||| ||||||||||||||| ||||||  ||||||| ||||||||||||||
seq2  CATCCACTTCTGTGTTTGCCAGGCCCCAGCATAGTCTCACAAGAGACAGC  200

seq1  TACATCTGGGTCCTTTCTATAAAATCTTGCTAGTGTATGCAATGGTGTCA  250
      || ||| ||||||||||   ||||||||||||||||||||||||||||||
seq2  TATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCA  250

seq1  GCGTTTGGATGCTGATTATGGGGTGGATC  279
      ||||||||| |||||||||||| ||||||
seq2  GCGTTTGGAGGCTGATTATGGGATGGATC  279