BAC Information

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BAC

Clone NameB6Ng01-049A12
Chromosome1 (Build37)
Map Location 139,063,272 - 139,125,291
singlet/doubletdoublet
Overlap geneLOC100042567
Upstream geneKif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A12.bB6Ng01-049A12.g
ACCDH873408DH873409
length1,0391,048
definitionDH873408|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A12, 5' end.DH873409|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,063,272 - 139,064,316)(139,124,223 - 139,125,291)
sequence
gaattctttttgccacaggaatcattgggaagacttgtgcataatgtagt
aatcatggatgatagaggagaatgggatcagaggtgactaaagaggagac
agaaaatattactaaactgttgtaaaagtagcctttggttcctggagtgt
ggatgaaacacagggatccccggagactgctctccttacttccctgcttt
gaatgcagcagtagattctctccctttcttaacatgacagtgattcagag
tgtacctgaatgattctaagatgatggcatattgaacagaaccctccagc
tttagcagtgtttccttcacaacatacttagaattacgggaaaaaaaatg
aagaactctaaataactatagatgaaatttcctttcctattatgcaggaa
agataaccaaaattctgggcagctaaggagaatacctaaaatcacagagc
tgtaaatggggactctgggatcaggaggaagtgggctcttacccttctta
tagtaccttgtgtgagtacaggaaggtgaggaagtgggaggagcttggag
attacagtagggaaggaaaacaagccaactttagagatcccaggggaaat
ggtcttccatacttgccaataaagcacgctatttacaaacacagtagaaa
tgaccactgtgaaaactggggacaatttgaaggggacaatgcagttcata
aatatttattaccaccacaaaactagttgcgcttgtatgtatttagttaa
aggtcctagctttaggttagaggatgatgtgagaaataaagaacaaagag
aaattgctcatcaagtactttttttctagtgcgtatttcccctcattcac
ctttgggcaccctccccttgtcaggaactctcagctggaactaagagctg
tagctgtctcactgcctttctattttcatctctgtcttgaacacttcgtg
ctgtggtttgaactacaaaggatcctgtgttgggaactcagtcttctgtg
tggaagagctggagtgggacctcgagacatggctacaag
gaattcctaaaagcttgaacatgcttctctcctgggtgatatcctaaaga
atactgttgtcaaaccaaacgtgcctggggtatctgtgacagaaggagag
atggccacagctgggatatttatctctgcagaagtaagtctataatgatg
agcctctgaacactgtgtatgtagtatgtggatgggacttgttttcatag
atgtagaacataggttaaaaaaaaaaactcttagctttctgacttaaatg
gttcaatgtgagtcagaaaataatatttaaagatggcagagtgcataata
ataaaaagtggatccaacattaattggcacaagaggaccaaattctaagt
tcctgggaaaaattcagctagtagaaagatgtaataaaacacaaacacta
aacataaaataatataaatggtaattgcatcacaaccaaacaggagacca
aatacagcagttgcaatatcaaatgagaaactaattcacttaataagaaa
aatgttttttaattgggtcataaagtgcaaatgcaattgtgcatacaata
ttaaaatatgtttgtgtatatgtgcctattgattatatgctttttttaaa
gtgctgaaaggggggaaaagtaagtcaaaattcaaacaaacaattcgatg
caactgaactgcgtttcaaagacttctataatcactgttaaacaaaacta
actccaagaaacttctgaatagcgtagagtcccaaagttgggatagagat
gctgatacaaagtagatctagtatgttgatgtgattgtaacattctgaaa
ctatctgacatgtttgtagtattgaatgaaggagaacctgtgttggtaac
ctttggtatttcaaggacagcacacttgctgaggaaggaaactgggcatg
tccatatcactcatatgaaagtcacccagtacaaaagtgacgtgcatgac
acaagtcacatgacacacatgacgcactttgaactccaagagactgcata
tgagagtgcatactgtggatctgtccctatccactctagtcgacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139063272_139064316
seq2: B6Ng01-049A12.b_47_1085

seq1  GAATTCTTTTTGCCACAGGAATCATTGGGAAGACTTGTGCATAATGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCCACAGGAATCATTGGGAAGACTTGTGCATAATGTAGT  50

seq1  AATCATGGATGATAGAGGAGAATGGGATCAGAGGTGACTAAAGAGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGATGATAGAGGAGAATGGGATCAGAGGTGACTAAAGAGGAGAC  100

seq1  AGAAAATATTACTAAACTGTTGTAAAAGTAGCCTTTGGTTCCTGGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATTACTAAACTGTTGTAAAAGTAGCCTTTGGTTCCTGGAGTGT  150

seq1  GGATGAAACACAGGGATCCCCGGAGACTGCTCTCCTTACTTCCCTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAACACAGGGATCCCCGGAGACTGCTCTCCTTACTTCCCTGCTTT  200

seq1  GAATGCAGCAGTAGATTCTCTCCCTTTCTTAACATGACAGTGATTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGCAGTAGATTCTCTCCCTTTCTTAACATGACAGTGATTCAGAG  250

seq1  TGTACCTGAATGATTCTAAGATGATGGCATATTGAACAGAACCCTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGAATGATTCTAAGATGATGGCATATTGAACAGAACCCTCCAGC  300

seq1  TTTAGCAGTGTTTCCTTCACAACATACTTAGAATTACGGGAAAAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGTGTTTCCTTCACAACATACTTAGAATTACGGGAAAAAAAATG  350

seq1  AAGAACTCTAAATAACTATAGATGAAATTTCCTTTCCTATTATGCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTAAATAACTATAGATGAAATTTCCTTTCCTATTATGCAGGAA  400

seq1  AGATAACCAAAATTCTGGGCAGCTAAGGAGAATACCTAAAATCACAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCAAAATTCTGGGCAGCTAAGGAGAATACCTAAAATCACAGAGC  450

seq1  TGTAAATGGGGACTCTGGGATCAGGAGGAAGTGGGCTCTTACCCTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGGGACTCTGGGATCAGGAGGAAGTGGGCTCTTACCCTTCTTA  500

seq1  TAGTACCTTGTGTGAGTACAGGAAGGTGAGGAAGTGGGAGGAGCTTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTTGTGTGAGTACAGGAAGGTGAGGAAGTGGGAGGAGCTTGGAG  550

seq1  ATTACAGTAGGGAAGGAAAACAAGCCAACTTTAGAGATCCCAGGGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAGGGAAGGAAAACAAGCCAACTTTAGAGATCCCAGGGGAAAT  600

seq1  GGTCTTCCATACTTGCCAATAAAGCACGCTATTTACAAACACAGTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCATACTTGCCAATAAAGCACGCTATTTACAAACACAGTAGAAA  650

seq1  TGACCACTGTGAAAACTGGGGACAATTTGAAGGGGACAATGCAGTTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTGTGAAAACTGGGGACAATTTGAAGGGGACAATGCAGTTCATA  700

seq1  AATATTTATTACCACCACAAAACTAGTTGCGCTTGTATGTATTTAGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTACCACCACAAAACTAGTTGCGCTTGTATGTATTTAGTTAA  750

seq1  AGGTCCTAGCTTTAGGTTAGAGGATGATGTGAGAAATAAAGAACAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTAGCTTTAGGTTAGAGGATGATGTGAGAAATAAAGAACAAAGAG  800

seq1  AAATTGCTCATCAAGTACTTTTTTTCTAGTGCGTATTTCCCCTCATTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTCATCAAGTACTTTTTTTCTAGTGCGTATTTCCCCTCATTCAC  850

seq1  CTTTGGGCACCCTCCCCTTGTCAGGAACTCTCAGCTGGAACTAAGAGGCT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGGGCACCCTCCCCTTGTCAGGAACTCTCAGCTGGAACTAAGA-GCT  899

seq1  GTAGCTGTTCTCACTGCCTTTCTATTTTCATCTCTGTCTTGAACACTTCG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTG-TCTCACTGCCTTTCTATTTTCATCTCTGTCTTGAACACTTCG  948

seq1  TGCTGTGGTTTGAACTTACAAAGGGATCCTGTGTTGGGAACTCAGTCCTC  1000
      ||||||||||||||| |||||| |||||||||||||||||||||||| ||
seq2  TGCTGTGGTTTGAAC-TACAAA-GGATCCTGTGTTGGGAACTCAGTCTTC  996

seq1  TGTGTGGAGAGGCTGGGAGTGGGACCTCGAAGACATGGCTACAAG  1045
      ||||||||   ||| |||||||||||||| |||||||||||||||
seq2  TGTGTGGAAGAGCT-GGAGTGGGACCTCG-AGACATGGCTACAAG  1039

seq1: chr1_139124223_139125291
seq2: B6Ng01-049A12.g_68_1115 (reverse)

seq1  TTTTGTCTGACCTAGAGTTTGATAGGGACAGAATCCCACAGTATGCACTC  50
      ||||||| || |||||| | ||||||||||||   |||||||||||||| 
seq2  TTTTGTC-GA-CTAGAG-TGGATAGGGACAGA--TCCACAGTATGCACT-  44

seq1  CTCATATGCAGTTCCTCTGTGGAGTTTTCAAAGTGCGTTCATGTTGTTGT  100
      ||||||||||||  |||| |||||  ||||||||||| ||||||   |||
seq2  CTCATATGCAGT--CTCT-TGGAG--TTCAAAGTGCG-TCATGT--GTGT  86

seq1  CATGTGACTTGTGTCATGCACGTCACCTTTTTGTTACTGGGTGACTTTTC  150
      ||||||||||||||||||||||||||  ||||| ||||||||||| ||||
seq2  CATGTGACTTGTGTCATGCACGTCAC--TTTTG-TACTGGGTGAC-TTTC  132

seq1  ATTATTGGGTGATATTGGACATGCCCAGTTTTCCTTCCTCAGCAAGTGTG  200
      ||   || |||||| ||||||||||||| |||||||||||||||||||||
seq2  AT--ATGAGTGATA-TGGACATGCCCAG-TTTCCTTCCTCAGCAAGTGTG  178

seq1  CTGTCCTTGAAATACC-AAGGTTACCAACACAGGTTCTCCTTCATTCAAT  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGTCCTTGAAATACCAAAGGTTACCAACACAGGTTCTCCTTCATTCAAT  228

seq1  ACTACAAACATGTCAGATAGTTTCAGAATGTTACAATCACATCAACATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAACATGTCAGATAGTTTCAGAATGTTACAATCACATCAACATAC  278

seq1  TAGATCTACTTTGTATCAGCATCTCTATCCCAACTTTGGGACTCTACGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTACTTTGTATCAGCATCTCTATCCCAACTTTGGGACTCTACGCT  328

seq1  ATTCAGAAGTTTCTTGGAGTTAGTTTTGTTTAACAGTGATTATAGAAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAGTTTCTTGGAGTTAGTTTTGTTTAACAGTGATTATAGAAGTC  378

seq1  TTTGAAACGCAGTTCAGTTGCATCGAATTGTTTGTTTGAATTTTGACTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACGCAGTTCAGTTGCATCGAATTGTTTGTTTGAATTTTGACTTA  428

seq1  CTTTTCCCCCCTTTCAGCACTTTAAAAAAAGCATATAATCAATAGGCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCCCCTTTCAGCACTTTAAAAAAAGCATATAATCAATAGGCACA  478

seq1  TATACACAAACATATTTTAATATTGTATGCACAATTGCATTTGCACTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAACATATTTTAATATTGTATGCACAATTGCATTTGCACTTTA  528

seq1  TGACCCAATTAAAAAACATTTTTCTTATTAAGTGAATTAGTTTCTCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAATTAAAAAACATTTTTCTTATTAAGTGAATTAGTTTCTCATTT  578

seq1  GATATTGCAACTGCTGTATTTGGTCTCCTGTTTGGTTGTGATGCAATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCAACTGCTGTATTTGGTCTCCTGTTTGGTTGTGATGCAATTAC  628

seq1  CATTTATATTATTTTATGTTTAGTGTTTGTGTTTTATTACATCTTTCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATTATTTTATGTTTAGTGTTTGTGTTTTATTACATCTTTCTAC  678

seq1  TAGCTGAATTTTTCCCAGGAACTTAGAATTTGGTCCTCTTGTGCCAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATTTTTCCCAGGAACTTAGAATTTGGTCCTCTTGTGCCAATTA  728

seq1  ATGTTGGATCCACTTTTTATTATTATGCACTCTGCCATCTTTAAATATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGATCCACTTTTTATTATTATGCACTCTGCCATCTTTAAATATTA  778

seq1  TTTTCTGACTCACATTGAACCATTTAAGTCAGAAAGCTAAGAGTTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGACTCACATTGAACCATTTAAGTCAGAAAGCTAAGAGTTTTTTT  828

seq1  TTTTAACCTATGTTCTACATCTATGAAAACAAGTCCCATCCACATACTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTATGTTCTACATCTATGAAAACAAGTCCCATCCACATACTAC  878

seq1  ATACACAGTGTTCAGAGGCTCATCATTATAGACTTACTTCTGCAGAGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGTGTTCAGAGGCTCATCATTATAGACTTACTTCTGCAGAGATA  928

seq1  AATATCCCAGCTGTGGCCATCTCTCCTTCTGTCACAGATACCCCAGGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCAGCTGTGGCCATCTCTCCTTCTGTCACAGATACCCCAGGCAC  978

seq1  GTTTGGTTTGACAACAGTATTCTTTAGGATATCACCCAGGAGAGAAGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGACAACAGTATTCTTTAGGATATCACCCAGGAGAGAAGCAT  1028

seq1  GTTCAAGCTTTTAGGAATTC  1069
      ||||||||||||||||||||
seq2  GTTCAAGCTTTTAGGAATTC  1048